Rorug04G0139700

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016209
Physical Location & Seq
Reverse (-)
22939352 .. 22942070
2719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0139700.1

Sequence Viewer

Length: 1356 bp
ATGTATCAAATATGTAATCGGTTTTCTCCATTGATAAATATTTGTGTTCTCATTATCCTTTTGCAATTAAAAAGCTCATCTGCTGTGGACTCACAGTACGAAGCCTGCAGTAAGCCCCAAACTTGTGGTAACCAGCCCATCAGGTATCCCTTCTATCTCGGCGGACAACAAGAATCGTATTGCGGCTACCCTGGTTTCGAGCTCAACTGCAATGGAAACGGCCTCTTACTCCGTGGTGGCAATTTCCCCAATTTCGGGTCCGCAACGATTAACGCAATCAATTACGAAAACCAAACTCTTCACGTCTCATACGATAGTTTTATAACTTTTATTGATCAAGAATTAGACGGAGATTGTCTTGGATATCTCGAAAACTTTACCTTGCCAAATGGTCAGTACGAGCTGGCTCCAAATCAAAAGGAATTCGTTTTGCTCTACTATTGCAACTCTTCTTTGGTTGATGAGTCGTTTTCAGAGTACAAGCTTGGCTGCTCTTGGCTATACTCTAACAAAACCCGTACTAGGACAACAGTTCTGGCCCTGACCAAGGATGATCCACAGTACGGAAATGCCCTTGAGAAGTGTGGAAAAGAACGGGTGACGGTTGAAGGGGTATATGCCAATGATACTGTGAGTATTACTGGCACCGCTGCGGGAATAAGACAGGGGCTGAAAGCAGGGTTTGTGGTAAAATGGTCAGCCAGAAACTGCAGTCACTGTGAGAACAGTGGTGGGAAATGTGGAACTAGTGTTGGTGATCAGTTAACGTGCTTCTGCCCGGATAAACGTCATCCTTTCTTCTGTCCTGAAGAAGAACCTGGAAATTTGGCTACTCAGTTGTCAATAGTTGGAGCAGTTGCTGGTGTGGCGGTTCTAGTGGTTATTGTTTGGTGCTTAAGGGGAAAGTTATCAACTTATAGAATTATTTTCTTTTGGAAAATGCAAAACCAAAAGCGGCGAACTGTTGAGGCCTTTCTAAGAAACTATGGGGGACTCCAAGTTAAAAGATACAGCTATTTGAAAGTTAAGAAAATGACCAACTCCTTCAAAAGAAAACTAGGACAAGGGGGCTACGGCGGTGTATACAAAGGAAAACTAAATGACGGCCGTCTTGTAGCAGTGAAGGTCTTGAACAAACCAAAAGGTGATGGAGAAGACTTTATGAATGAGGTTGCAGCCATTAGTACAACTTCCCATGTCAACATTGTCAGCCTGTTGGGGTTTTGTTTTGAGGGTTCGAAAAGAGCTCTTATTCTCTTGAAAAGTTCATATTTGATGCAAAGACCCCCCAAAAGGATCATCACTTGGGATGGGACATGTTGGAAACAATTTCACTTGGTATTGCTCAAGGACTAG

Protein Analysis

451

Amino Acids

50.36

Weight (kDa)

8.93

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 36 - 103 3.8e-16 Wall-associated receptor kinase galacturonan-binding
WAK_assoc PF14380 178 - 262 3.7e-12 Wall-associated receptor kinase C-terminal
PK_Tyr_Ser-Thr PF07714 349 - 418 8.5e-11 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 350 - 419 2.9e-09 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14890
fragaria_vesca FvH4_4g15630
malus_domestica MD13G1193300.v1.1
prunus_persica Prupe.1G013900_v2.0.a1
pyrus_communis pycom16g16400
rosa_chinensis RchiOBHm_Chr4g0416181
rosa_laevigata RLG00000008008
rosa_multiflora Rmu_co8387285.1_g000001
rosa_roxburghii Rroxscaffold_5G00360040
rosa_rugosa Rorug04G0139700
rosa_samantha Rh4AG201700 Rh4BG199100 Rh4CG214200 Rh4DG198900
rosa_wichuraiana Rw4G017050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 644
AccI GTMKAC 1 cut(s) 1083
AciI CCGC 8 cut(s) 162, 183, 261, 648, 653, 869, 955, 1077
AclWI GGATC 2 cut(s) 548, 1304
AcoI YGGCCR 1 cut(s) 1105
AcsI RAATTY 2 cut(s) 422, 823
AcuI CTGAAG 1 cut(s) 828
AfaI GTAC 6 cut(s) 98, 398, 479, 520, 563, 1186
AfiI CCNNNNNNNGG 6 cut(s) 254, 255, 522, 547, 563, 1293
AflII CTTAAG 1 cut(s) 895
AflIII ACRYGT 1 cut(s) 1316
AgsI TTSAA 5 cut(s) 608, 1021, 1048, 1132, 1261
AhlI ACTAGT 1 cut(s) 746
AjiI CACGTC 1 cut(s) 304
AjnI CCWGG 2 cut(s) 190, 817
AluBI AGCT 6 cut(s) 75, 202, 403, 484, 1014, 1247
AluI AGCT 6 cut(s) 75, 202, 403, 484, 1014, 1247
Alw21I GWGCWC 2 cut(s) 204, 1249
Alw26I GTCTC 1 cut(s) 310
AlwI GGATC 2 cut(s) 548, 1304
AlwNI CAGNNNCTG 4 cut(s) 670, 708, 717, 860
AoxI GGCC 4 cut(s) 220, 537, 969, 1105
ApeKI GCWGC 3 cut(s) 489, 650, 1175
ApoI RAATTY 2 cut(s) 422, 823
AspS9I GGNCC 2 cut(s) 258, 538
AsuC2I CCSGG 1 cut(s) 779
AsuHPI GGTGA 3 cut(s) 610, 767, 1157
AsuII TTCGAA 1 cut(s) 1238
AvaII GGWCC 1 cut(s) 258
BanI GGYRCC 1 cut(s) 644
BanII GRGCYC 2 cut(s) 204, 1249
BbsI GAAGAC 1 cut(s) 1161
Bbv12I GWGCWC 2 cut(s) 204, 1249
BbvI GCAGC 3 cut(s) 476, 637, 1187
BccI CCATC 3 cut(s) 146, 1142, 1304
BceAI ACGGC 4 cut(s) 235, 1090, 1092, 1120
BciT130I CCWGG 2 cut(s) 192, 819
BciVI GTATCC 1 cut(s) 156
BclI TGATCA 2 cut(s) 334, 757
BcnI CCSGG 1 cut(s) 779
BcoDI GTCTC 1 cut(s) 310
BcuI ACTAGT 1 cut(s) 746
BfaI CTAG 5 cut(s) 522, 747, 875, 1058, 1354
BfmI CTRYAG 2 cut(s) 106, 709
BfrI CTTAAG 1 cut(s) 895
BfuI GTATCC 1 cut(s) 156
BisI GCNGC 5 cut(s) 184, 490, 651, 956, 1176
BlsI GCNGC 5 cut(s) 185, 491, 652, 957, 1177
Bme1390I CCNGG 3 cut(s) 192, 779, 819
Bme18I GGWCC 1 cut(s) 258
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 2 cut(s) 258, 538
BmiI GGNNCC 3 cut(s) 259, 408, 646
BmrFI CCNGG 3 cut(s) 192, 779, 819
BmsI GCATC 1 cut(s) 1266
BoxI GACNNNNGTC 1 cut(s) 1107
BpiI GAAGAC 1 cut(s) 1161
Bpu14I TTCGAA 1 cut(s) 1238
BpuEI CTTGAG 2 cut(s) 596, 1331
BpuMI CCSGG 1 cut(s) 779
BsaJI CCNNGG 3 cut(s) 190, 232, 546
Bsc4I CCNNNNNNNGG 6 cut(s) 254, 255, 522, 547, 563, 1293
Bse1I ACTGG 1 cut(s) 646
Bse3DI GCAATG 1 cut(s) 217
BseBI CCWGG 2 cut(s) 192, 819
BseDI CCNNGG 3 cut(s) 190, 232, 546
BseGI GGATG 3 cut(s) 556, 790, 1315
BseLI CCNNNNNNNGG 6 cut(s) 254, 255, 522, 547, 563, 1293
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 848
BseNI ACTGG 1 cut(s) 646
BseX3I CGGCCG 1 cut(s) 1105
BseXI GCAGC 3 cut(s) 476, 637, 1187
Bsh1285I CGRYCG 1 cut(s) 1108
BshFI GGCC 4 cut(s) 222, 539, 971, 1107
BshNI GGYRCC 1 cut(s) 644
BsiEI CGRYCG 1 cut(s) 1108
BsiHKAI GWGCWC 2 cut(s) 204, 1249
BsiSI CCGG 1 cut(s) 779
BslFI GGGAC 2 cut(s) 1005, 1327
BslI CCNNNNNNNGG 6 cut(s) 254, 255, 522, 547, 563, 1293
BsmAI GTCTC 1 cut(s) 310
BsmBI CGTCTC 1 cut(s) 310
BsmFI GGGAC 2 cut(s) 1005, 1327
BsnI GGCC 4 cut(s) 222, 539, 971, 1107
Bsp119I TTCGAA 1 cut(s) 1238
Bsp1286I GDGCHC 2 cut(s) 204, 1249
Bsp143I GATC 4 cut(s) 334, 553, 757, 1296
BspACI CCGC 8 cut(s) 162, 183, 261, 648, 653, 869, 955, 1077
BspANI GGCC 4 cut(s) 222, 539, 971, 1107
BspCNI CTCAG 1 cut(s) 847
BspLI GGNNCC 3 cut(s) 259, 408, 646
BspMAI CTGCAG 2 cut(s) 110, 713
BspPI GGATC 2 cut(s) 548, 1304
BspT104I TTCGAA 1 cut(s) 1238
BspT107I GGYRCC 1 cut(s) 644
BspTI CTTAAG 1 cut(s) 895
BsrDI GCAATG 1 cut(s) 217
BsrI ACTGG 1 cut(s) 646
BssECI CCNNGG 3 cut(s) 190, 232, 546
BssMI GATC 4 cut(s) 334, 553, 757, 1296
BssNAI GTATAC 1 cut(s) 1084
BssT1I CCWWGG 1 cut(s) 546
Bst1107I GTATAC 1 cut(s) 1084
Bst2UI CCWGG 2 cut(s) 192, 819
Bst4CI ACNGT 8 cut(s) 96, 532, 561, 604, 631, 719, 728, 964
Bst6I CTCTTC 2 cut(s) 303, 454
BstAFI CTTAAG 1 cut(s) 895
BstBI TTCGAA 1 cut(s) 1238
BstC8I GCNNGC 2 cut(s) 106, 405
BstDEI CTNAG 2 cut(s) 834, 977
BstDSI CCRYGG 1 cut(s) 232
BstEII GGTNACC 1 cut(s) 128
BstENI CCTNNNNNAGG 1 cut(s) 545
BstF5I GGATG 3 cut(s) 556, 790, 1315
BstKTI GATC 4 cut(s) 337, 556, 760, 1299
BstMAI GTCTC 1 cut(s) 310
BstMBI GATC 4 cut(s) 334, 553, 757, 1296
BstMCI CGRYCG 1 cut(s) 1108
BstMWI GCNNNNNNNGC 1 cut(s) 866
BstNI CCWGG 2 cut(s) 192, 819
BstNSI RCATGY 1 cut(s) 1320
BstPAI GACNNNNGTC 1 cut(s) 1107
BstPI GGTNACC 1 cut(s) 128
BstSCI CCNGG 3 cut(s) 190, 777, 817
BstSFI CTRYAG 2 cut(s) 106, 709
BstV1I GCAGC 3 cut(s) 476, 637, 1187
BstV2I GAAGAC 1 cut(s) 1161
BstXI CCANNNNNNTGG 1 cut(s) 125
BstZ17I GTATAC 1 cut(s) 1084
BstZI CGGCCG 1 cut(s) 1105
BsuI GTATCC 1 cut(s) 156
BsuRI GGCC 4 cut(s) 222, 539, 971, 1107
BtgI CCRYGG 1 cut(s) 232
BtrI CACGTC 1 cut(s) 304
BtsCI GGATG 3 cut(s) 556, 790, 1315
BtsI GCAGTG 1 cut(s) 1125
BtsIMutI CAGTG 3 cut(s) 715, 733, 1125
Cac8I GCNNGC 2 cut(s) 106, 405
CaiI CAGNNNCTG 4 cut(s) 670, 708, 717, 860
Cfr13I GGNCC 2 cut(s) 258, 538
Csp6I GTAC 6 cut(s) 97, 397, 478, 519, 562, 1185
CviAII CATG 2 cut(s) 1196, 1317
CviQI GTAC 6 cut(s) 97, 397, 478, 519, 562, 1185
DdeI CTNAG 2 cut(s) 834, 977
DpnI GATC 4 cut(s) 336, 555, 759, 1298
DpnII GATC 4 cut(s) 334, 553, 757, 1296
EaeI YGGCCR 1 cut(s) 1105
EagI CGGCCG 1 cut(s) 1105
Eam1104I CTCTTC 2 cut(s) 303, 454
EarI CTCTTC 2 cut(s) 303, 454
EciI GGCGGA 1 cut(s) 177
Ecl136II GAGCTC 2 cut(s) 202, 1247
EclXI CGGCCG 1 cut(s) 1105
Eco130I CCWWGG 1 cut(s) 546
Eco147I AGGCCT 1 cut(s) 971
Eco24I GRGCYC 2 cut(s) 204, 1249
Eco32I GATATC 1 cut(s) 365
Eco47I GGWCC 1 cut(s) 258
Eco52I CGGCCG 1 cut(s) 1105
Eco53kI GAGCTC 2 cut(s) 202, 1247
Eco57I CTGAAG 1 cut(s) 828
Eco91I GGTNACC 1 cut(s) 128
EcoICRI GAGCTC 2 cut(s) 202, 1247
EcoNI CCTNNNNNAGG 1 cut(s) 545
EcoO65I GGTNACC 1 cut(s) 128
EcoRI GAATTC 1 cut(s) 422
EcoRII CCWGG 2 cut(s) 190, 817
EcoRV GATATC 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 546
EcoT38I GRGCYC 2 cut(s) 204, 1249
ErhI CCWWGG 1 cut(s) 546
Esp3I CGTCTC 1 cut(s) 310
FaeI CATG 2 cut(s) 1199, 1320
FaqI GGGAC 2 cut(s) 1005, 1327
FatI CATG 2 cut(s) 1195, 1316
FauI CCCGC 1 cut(s) 646
FbaI TGATCA 2 cut(s) 334, 757
FblI GTMKAC 1 cut(s) 1083
Fnu4HI GCNGC 5 cut(s) 184, 490, 651, 956, 1176
FokI GGATG 3 cut(s) 563, 777, 1322
FriOI GRGCYC 2 cut(s) 204, 1249
Fsp4HI GCNGC 5 cut(s) 184, 490, 651, 956, 1176
FspBI CTAG 5 cut(s) 522, 747, 875, 1058, 1354
GluI GCNGC 5 cut(s) 184, 490, 651, 956, 1176
HaeIII GGCC 4 cut(s) 222, 539, 971, 1107
HapII CCGG 1 cut(s) 779
Hin1II CATG 2 cut(s) 1199, 1320
HincII GTYRAC 2 cut(s) 765, 1201
HindII GTYRAC 2 cut(s) 765, 1201
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 4 cut(s) 89, 173, 464, 993
HpaI GTTAAC 1 cut(s) 765
HpaII CCGG 1 cut(s) 779
HphI GGTGA 3 cut(s) 610, 767, 1157
Hpy166II GTNNAC 4 cut(s) 88, 765, 1084, 1201
Hpy188I TCNGA 1 cut(s) 475
Hpy188III TCNNGA 5 cut(s) 338, 368, 806, 1129, 1258
Hpy8I GTNNAC 4 cut(s) 88, 765, 1084, 1201
HpyAV CCTTC 4 cut(s) 160, 602, 1054, 1117
HpyCH4III ACNGT 8 cut(s) 96, 532, 561, 604, 631, 719, 728, 964
HpyCH4IV ACGT 3 cut(s) 303, 767, 787
HpyCH4V TGCA 8 cut(s) 64, 108, 210, 444, 711, 943, 1175, 1279
HpyF10VI GCNNNNNNNGC 1 cut(s) 866
HpyF3I CTNAG 2 cut(s) 834, 977
HpySE526I ACGT 3 cut(s) 303, 767, 787
Hsp92II CATG 2 cut(s) 1199, 1320
Ksp22I TGATCA 2 cut(s) 334, 757
KspAI GTTAAC 1 cut(s) 765
Kzo9I GATC 4 cut(s) 334, 553, 757, 1296
LmnI GCTCC 2 cut(s) 412, 851
Lsp1109I GCAGC 3 cut(s) 476, 637, 1187
LweI GCATC 1 cut(s) 1266
MaeI CTAG 5 cut(s) 522, 747, 875, 1058, 1354
MaeII ACGT 3 cut(s) 303, 767, 787
MaeIII GTNAC 3 cut(s) 128, 598, 713
MalI GATC 4 cut(s) 336, 555, 759, 1298
MboI GATC 4 cut(s) 334, 553, 757, 1296
MboII GAAGA 6 cut(s) 290, 441, 790, 821, 824, 1166
MhlI GDGCHC 2 cut(s) 204, 1249
MluCI AATT 9 cut(s) 65, 241, 250, 280, 341, 422, 823, 921, 1328
MlyI GAGTC 3 cut(s) 83, 473, 987
MmeI TCCRAC 2 cut(s) 829, 1301
MnlI CCTC 4 cut(s) 233, 961, 1162, 1225
MseI TTAA 6 cut(s) 68, 270, 764, 896, 1002, 1026
MspA1I CMGCKG 1 cut(s) 650
MspCI CTTAAG 1 cut(s) 895
MspI CCGG 1 cut(s) 779
MspR9I CCNGG 3 cut(s) 192, 779, 819
MvaI CCWGG 2 cut(s) 192, 819
MwoI GCNNNNNNNGC 1 cut(s) 866
NciI CCSGG 1 cut(s) 779
NdeII GATC 4 cut(s) 334, 553, 757, 1296
NlaIII CATG 2 cut(s) 1199, 1320
NlaIV GGNNCC 3 cut(s) 259, 408, 646
NmeAIII GCCGAG 1 cut(s) 138
NmuCI GTSAC 2 cut(s) 598, 713
NspI RCATGY 1 cut(s) 1320
NspV TTCGAA 1 cut(s) 1238
PceI AGGCCT 1 cut(s) 971
PciI ACATGT 1 cut(s) 1316
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 5 cut(s) 185, 491, 652, 957, 1177
PleI GAGTC 3 cut(s) 83, 472, 987
PpsI GAGTC 3 cut(s) 83, 472, 987
PscI ACATGT 1 cut(s) 1316
PshAI GACNNNNGTC 1 cut(s) 1107
PsiI TTATAA 1 cut(s) 323
Psp124BI GAGCTC 2 cut(s) 204, 1249
Psp6I CCWGG 2 cut(s) 190, 817
PspEI GGTNACC 1 cut(s) 128
PspGI CCWGG 2 cut(s) 190, 817
PspN4I GGNNCC 3 cut(s) 259, 408, 646
PspPI GGNCC 2 cut(s) 258, 538
PstI CTGCAG 2 cut(s) 110, 713
PstNI CAGNNNCTG 4 cut(s) 670, 708, 717, 860
RsaI GTAC 6 cut(s) 98, 398, 479, 520, 563, 1186
RsaNI GTAC 6 cut(s) 97, 397, 478, 519, 562, 1185
SacI GAGCTC 2 cut(s) 204, 1249
SaqAI TTAA 6 cut(s) 68, 270, 764, 896, 1002, 1026
SatI GCNGC 5 cut(s) 184, 490, 651, 956, 1176
Sau3AI GATC 4 cut(s) 334, 553, 757, 1296
Sau96I GGNCC 2 cut(s) 258, 538
SchI GAGTC 3 cut(s) 83, 473, 987
ScrFI CCNGG 3 cut(s) 192, 779, 819
SduI GDGCHC 2 cut(s) 204, 1249
SfaNI GCATC 1 cut(s) 1266
SfcI CTRYAG 2 cut(s) 106, 709
SfuI TTCGAA 1 cut(s) 1238
SinI GGWCC 1 cut(s) 258
SmlI CTYRAG 3 cut(s) 575, 895, 1346
SmoI CTYRAG 3 cut(s) 575, 895, 1346
SpeI ACTAGT 1 cut(s) 746
Sse9I AATT 9 cut(s) 65, 241, 250, 280, 341, 422, 823, 921, 1328
SseBI AGGCCT 1 cut(s) 971
SsiI CCGC 8 cut(s) 162, 183, 261, 648, 653, 869, 955, 1077
SspI AATATT 1 cut(s) 40
SspMI CTAG 5 cut(s) 522, 747, 875, 1058, 1354
SstI GAGCTC 2 cut(s) 204, 1249
StuI AGGCCT 1 cut(s) 971
StyD4I CCNGG 3 cut(s) 190, 777, 817
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 8 cut(s) 96, 532, 561, 604, 631, 719, 728, 964
TaiI ACGT 3 cut(s) 306, 770, 790
TaqI TCGA 3 cut(s) 198, 369, 1238
TasI AATT 9 cut(s) 65, 241, 250, 280, 341, 422, 823, 921, 1328
TatI WGTACW 2 cut(s) 477, 1184
TauI GCSGC 2 cut(s) 186, 958
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 6 cut(s) 68, 270, 764, 896, 1002, 1026
Tru9I TTAA 6 cut(s) 68, 270, 764, 896, 1002, 1026
TscAI CASTG 3 cut(s) 722, 733, 1125
TseFI GTSAC 2 cut(s) 598, 713
TseI GCWGC 3 cut(s) 489, 650, 1175
Tsp45I GTSAC 2 cut(s) 598, 713
TspDTI ATGAA 2 cut(s) 1178, 1257
TspGWI ACGGA 3 cut(s) 221, 363, 579
TspRI CASTG 3 cut(s) 722, 733, 1125
Vha464I CTTAAG 1 cut(s) 895
VpaK11BI GGWCC 1 cut(s) 258
XagI CCTNNNNNAGG 1 cut(s) 545
XapI RAATTY 2 cut(s) 422, 823
XceI RCATGY 1 cut(s) 1320
XmiI GTMKAC 1 cut(s) 1083
XspI CTAG 5 cut(s) 522, 747, 875, 1058, 1354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.