Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8387285.1

Orthogroup ID

OG0016209

Physical Location & Seq

Genomic Coordinates Reverse (-)

646 .. 1098

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8387285.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atggcaacccttcactccactccatctccttgtttcactctcaacccaaaacagccacacacgacccaactgccctctccttttcatctcagtctccggccagcacggcaccatacacggctgcagtccaatgtggtccggtcgtacaaggttgtggtggagcacgagggcaagtccactgaacttgaggtggagccagatgagaccatactagaaaaggcattggagtctggattgtctgcgccgcacgactgcaagcttggggtgtgcatgacttgcccggctaagcttctcgccggcgaggtggaccagagtgaaggtatgctgagtgaggatgtggtggagagaggatatacattgctgtgtgtttcgtatcccaaatcggattgtcacattcggaccataccggaagaggagctgctctcactgcaattagcaacagctaatgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0016491 GO:0022900 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050896 GO:0051536 GO:0051537 GO:0051540 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

Fer2

Protein Analysis

150

Amino Acids

16.56

Weight (kDa)

5.43

Isoelectric Point (pI)

59.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14890
fragaria_vesca	FvH4_4g15630
malus_domestica	MD13G1193300.v1.1
prunus_persica	Prupe.1G013900_v2.0.a1
pyrus_communis	pycom16g16400
rosa_chinensis	RchiOBHm_Chr4g0416181
rosa_laevigata	RLG00000008008
rosa_multiflora	Rmu_co8387285.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360040
rosa_rugosa	Rorug04G0139700
rosa_samantha	Rh4AG201700 Rh4BG199100 Rh4CG214200 Rh4DG198900
rosa_wichuraiana	Rw4G017050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	108
AciI	CCGC	1 cut(s)	245
AcoI	YGGCCR	1 cut(s)	98
AfaI	GTAC	1 cut(s)	146
AluBI	AGCT	4 cut(s)	259, 289, 418, 443
AluI	AGCT	4 cut(s)	259, 289, 418, 443
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	2 cut(s)	98, 197
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	2 cut(s)	121, 418
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	3 cut(s)	136, 307, 399
AsuC2I	CCSGG	1 cut(s)	281
AvaII	GGWCC	3 cut(s)	136, 307, 399
BanI	GGYRCC	1 cut(s)	108
BauI	CACGAG	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	108, 405
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	2 cut(s)	122, 134
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BciVI	GTATCC	1 cut(s)	384
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	2 cut(s)	98, 197
BfaI	CTAG	2 cut(s)	212, 451
BfmI	CTRYAG	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	384
BglI	GCCNNNNNGGC	1 cut(s)	106
BisI	GCNGC	3 cut(s)	122, 245, 419
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	3 cut(s)	123, 246, 420
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	3 cut(s)	136, 307, 399
BmgT120I	GGNCC	3 cut(s)	136, 307, 399
BmiI	GGNNCC	2 cut(s)	110, 195
BmrFI	CCNGG	1 cut(s)	281
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	197
BsaWI	WCCGGW	2 cut(s)	138, 406
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse118I	RCCGGY	1 cut(s)	296
Bse3DI	GCAATG	1 cut(s)	356
BseGI	GGATG	1 cut(s)	340
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	2 cut(s)	103, 317
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	2 cut(s)	108, 405
Bsh1285I	CGRYCG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	100
BshNI	GGYRCC	1 cut(s)	108
BsiEI	CGRYCG	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	5 cut(s)	97, 139, 281, 297, 407
BsmAI	GTCTC	2 cut(s)	98, 197
BsnI	GGCC	1 cut(s)	100
Bso31I	GGTCTC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	2 cut(s)	102, 318
BspLI	GGNNCC	2 cut(s)	110, 195
BspMAI	CTGCAG	1 cut(s)	126
BspT107I	GGYRCC	1 cut(s)	108
BspTNI	GGTCTC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	356
BsrFI	RCCGGY	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	296
BssSI	CACGAG	1 cut(s)	164
Bst2BI	CACGAG	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	405
BstAPI	GCANNNNNTGC	1 cut(s)	276
BstC8I	GCNNGC	3 cut(s)	102, 257, 298
BstDEI	CTNAG	3 cut(s)	89, 285, 326
BstF5I	GGATG	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	244
BstMAI	GTCTC	2 cut(s)	98, 197
BstMCI	CGRYCG	1 cut(s)	143
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 276, 427
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	122
BstV1I	GCAGC	2 cut(s)	108, 405
BsuI	GTATCC	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	340
BtsI	GCAGTG	1 cut(s)	425
BtsIMutI	CAGTG	2 cut(s)	177, 425
Cac8I	GCNNGC	3 cut(s)	102, 257, 298
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	3 cut(s)	136, 307, 399
Csp6I	GTAC	1 cut(s)	145
CspCI	CAANNNNNGTGG	2 cut(s)	166, 201
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	9 cut(s)	55, 100, 121, 196, 259, 284, 289, 418, 443
CviKI_1	RGCY	9 cut(s)	55, 100, 121, 196, 259, 284, 289, 418, 443
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	3 cut(s)	89, 285, 326
EaeI	YGGCCR	1 cut(s)	98
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	197
Eco47I	GGWCC	3 cut(s)	136, 307, 399
FaeI	CATG	1 cut(s)	274
FaiI	YATR	6 cut(s)	114, 209, 272, 323, 354, 404
FatI	CATG	1 cut(s)	270
Fnu4HI	GCNGC	3 cut(s)	122, 245, 419
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	3 cut(s)	122, 245, 419
FspBI	CTAG	2 cut(s)	212, 451
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	3 cut(s)	122, 245, 419
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	5 cut(s)	97, 139, 281, 297, 407
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HindIII	AAGCTT	2 cut(s)	257, 287
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	5 cut(s)	97, 139, 281, 297, 407
Hpy166II	GTNNAC	2 cut(s)	177, 307
Hpy188I	TCNGA	2 cut(s)	385, 399
Hpy188III	TCNNGA	1 cut(s)	231
Hpy8I	GTNNAC	2 cut(s)	177, 307
HpyAV	CCTTC	2 cut(s)	20, 311
HpyCH4V	TGCA	4 cut(s)	124, 255, 270, 430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 276, 427
HpyF3I	CTNAG	3 cut(s)	89, 285, 326
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	1 cut(s)	242
KroI	GCCGGC	1 cut(s)	296
KroNI	GCCGGC	1 cut(s)	298
LmnI	GCTCC	3 cut(s)	160, 193, 415
LpnPI	CCDG	9 cut(s)	110, 114, 152, 210, 216, 294, 310, 323, 420
Lsp1109I	GCAGC	2 cut(s)	108, 405
MaeI	CTAG	2 cut(s)	212, 451
MaeIII	GTNAC	1 cut(s)	389
MboII	GAAGA	1 cut(s)	422
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	1 cut(s)	431
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	7 cut(s)	85, 160, 181, 295, 325, 341, 406
MreI	CGCCGGCG	1 cut(s)	296
MroNI	GCCGGC	1 cut(s)	296
MslI	CAYNNNNRTG	1 cut(s)	361
MspI	CCGG	5 cut(s)	97, 139, 281, 297, 407
MspR9I	CCNGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	3 cut(s)	106, 276, 427
NaeI	GCCGGC	1 cut(s)	298
NciI	CCSGG	1 cut(s)	281
NgoMIV	GCCGGC	1 cut(s)	296
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	2 cut(s)	110, 195
NmuCI	GTSAC	1 cut(s)	389
PdiI	GCCGGC	1 cut(s)	298
PkrI	GCNGC	3 cut(s)	123, 246, 420
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PspN4I	GGNNCC	2 cut(s)	110, 195
PspPI	GGNCC	3 cut(s)	136, 307, 399
PstI	CTGCAG	1 cut(s)	126
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	361
SatI	GCNGC	3 cut(s)	122, 245, 419
Sau96I	GGNCC	3 cut(s)	136, 307, 399
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	8 cut(s)	153, 192, 261, 291, 306, 322, 420, 445
SfcI	CTRYAG	1 cut(s)	122
SgrAI	CRCCGGYG	1 cut(s)	296
SinI	GGWCC	3 cut(s)	136, 307, 399
SmiMI	CAYNNNNRTG	1 cut(s)	361
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	431
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	2 cut(s)	212, 451
StyD4I	CCNGG	1 cut(s)	279
TasI	AATT	1 cut(s)	431
TauI	GCSGC	1 cut(s)	247
TscAI	CASTG	2 cut(s)	184, 432
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	2 cut(s)	121, 418
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	1 cut(s)	74
TspRI	CASTG	2 cut(s)	184, 432
VpaK11BI	GGWCC	3 cut(s)	136, 307, 399
XspI	CTAG	2 cut(s)	212, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.