MD13G1193300.v1.1

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0016209
Physical Location & Seq
Reverse (-)
16734523 .. 16734975
453 bp
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UTR
Exon/CDS
Intron
MD13G1193300.v1.1.491

Sequence Viewer

Length: 453 bp
ATGGCTACGCTCCACCTCACTCCCTCCCCTTCTCTCACCCTCCCAAAACAAGTACGCACAACCACCAATCTCTCCGCTTCATTCCAGCTCAATCTCCGGCCGCGCCACCGGTCACGGCGGTCCTACTCCTGCACCGTCCGATCCTATAAGGTGGTGGTGGAACACGAGGGTCAGTCTACCGAGCTGGAGGTGGAGCCTGATGAGACCATACTGGAAAAGGCATTGGACTCCGGCCTCTCTGTGCCGCATGACTGCAAGCTCGGCGTGTGCATGACTTGCCCTGCCAAGCTTCTCACCGGCACCGTCGATCAGAGTGAAGGAATGCTGAGTGATGATGTGGTGGAAGGCGGGTACACATTGTTGTGCGTGTCGTACCCCAAGTCGGATTGTCTTATTAGGACAATCCCGGAGGATGAACTGCTCTCACTGCAATTAGCAACTGCTAATGACTGA

Protein Analysis

151

Amino Acids

16.46

Weight (kDa)

5.18

Isoelectric Point (pI)

58.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 54 - 127 1.2e-14 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14890
fragaria_vesca FvH4_4g15630
malus_domestica MD13G1193300.v1.1
prunus_persica Prupe.1G013900_v2.0.a1
pyrus_communis pycom16g16400
rosa_chinensis RchiOBHm_Chr4g0416181
rosa_laevigata RLG00000008008
rosa_multiflora Rmu_co8387285.1_g000001
rosa_roxburghii Rroxscaffold_5G00360040
rosa_rugosa Rorug04G0139700
rosa_samantha Rh4AG201700 Rh4BG199100 Rh4CG214200 Rh4DG198900
rosa_wichuraiana Rw4G017050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 299
AccI GTMKAC 1 cut(s) 176
AccII CGCG 1 cut(s) 103
AciI CCGC 5 cut(s) 75, 101, 118, 245, 348
AclWI GGATC 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 98
AfaI GTAC 3 cut(s) 54, 353, 374
AfiI CCNNNNNNNGG 1 cut(s) 382
AgeI ACCGGT 1 cut(s) 108
AluBI AGCT 4 cut(s) 88, 184, 259, 289
AluI AGCT 4 cut(s) 88, 184, 259, 289
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 1 cut(s) 135
AoxI GGCC 2 cut(s) 98, 232
AsiGI ACCGGT 1 cut(s) 108
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 120
AsuC2I CCSGG 1 cut(s) 407
AsuHPI GGTGA 2 cut(s) 28, 286
AvaII GGWCC 1 cut(s) 120
BanI GGYRCC 1 cut(s) 299
BauI CACGAG 1 cut(s) 164
BceAI ACGGC 1 cut(s) 131
BcnI CCSGG 1 cut(s) 407
BcoDI GTCTC 1 cut(s) 197
BisI GCNGC 2 cut(s) 101, 245
BlsI GCNGC 2 cut(s) 102, 246
Bme1390I CCNGG 1 cut(s) 407
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 2 cut(s) 195, 301
BmrFI CCNGG 1 cut(s) 407
BpmI CTGGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 407
BsaI GGTCTC 1 cut(s) 197
BsaWI WCCGGW 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse118I RCCGGY 2 cut(s) 108, 296
Bse1I ACTGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 418
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 1 cut(s) 216
BseX3I CGGCCG 1 cut(s) 98
BsgI GTGCAG 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 101
BshFI GGCC 2 cut(s) 100, 234
BshNI GGYRCC 1 cut(s) 299
BshTI ACCGGT 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 101
BsiSI CCGG 5 cut(s) 97, 109, 231, 297, 407
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 327
BsnI GGCC 2 cut(s) 100, 234
Bso31I GGTCTC 1 cut(s) 197
Bsp143I GATC 2 cut(s) 140, 307
BspACI CCGC 5 cut(s) 75, 101, 118, 245, 348
BspANI GGCC 2 cut(s) 100, 234
BspCNI CTCAG 1 cut(s) 318
BspFNI CGCG 1 cut(s) 103
BspLI GGNNCC 2 cut(s) 195, 301
BspPI GGATC 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 197
BsrFI RCCGGY 2 cut(s) 108, 296
BsrI ACTGG 1 cut(s) 216
BssAI RCCGGY 2 cut(s) 108, 296
BssMI GATC 2 cut(s) 140, 307
BssSI CACGAG 1 cut(s) 164
Bst2BI CACGAG 1 cut(s) 164
Bst4CI ACNGT 2 cut(s) 136, 304
BstAPI GCANNNNNTGC 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 326
BstF5I GGATG 1 cut(s) 418
BstFNI CGCG 1 cut(s) 103
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 143, 310
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 2 cut(s) 140, 307
BstMCI CGRYCG 1 cut(s) 101
BstMWI GCNNNNNNNGC 3 cut(s) 261, 276, 427
BstSCI CCNGG 1 cut(s) 405
BstUI CGCG 1 cut(s) 103
BstZI CGGCCG 1 cut(s) 98
BsuRI GGCC 2 cut(s) 100, 234
BtsCI GGATG 1 cut(s) 418
BtsI GCAGTG 1 cut(s) 425
BtsIMutI CAGTG 1 cut(s) 425
Cac8I GCNNGC 1 cut(s) 257
CfoI GCGC 1 cut(s) 105
Cfr10I RCCGGY 2 cut(s) 108, 296
Cfr13I GGNCC 1 cut(s) 120
Csp6I GTAC 3 cut(s) 53, 352, 373
CspAI ACCGGT 1 cut(s) 108
CviAII CATG 2 cut(s) 248, 271
CviJI RGCY 8 cut(s) 5, 88, 100, 184, 196, 234, 259, 289
CviKI_1 RGCY 8 cut(s) 5, 88, 100, 184, 196, 234, 259, 289
CviQI GTAC 3 cut(s) 53, 352, 373
DdeI CTNAG 1 cut(s) 326
DpnI GATC 2 cut(s) 142, 309
DpnII GATC 2 cut(s) 140, 307
EaeI YGGCCR 1 cut(s) 98
EagI CGGCCG 1 cut(s) 98
EclXI CGGCCG 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 120
Eco52I CGGCCG 1 cut(s) 98
FaeI CATG 2 cut(s) 251, 274
FaiI YATR 4 cut(s) 147, 209, 249, 272
FatI CATG 2 cut(s) 247, 270
FauI CCCGC 1 cut(s) 341
FblI GTMKAC 1 cut(s) 176
Fnu4HI GCNGC 2 cut(s) 101, 245
FokI GGATG 1 cut(s) 425
Fsp4HI GCNGC 2 cut(s) 101, 245
GlaI GCGC 1 cut(s) 104
GluI GCNGC 2 cut(s) 101, 245
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 2 cut(s) 100, 234
HapII CCGG 5 cut(s) 97, 109, 231, 297, 407
HhaI GCGC 1 cut(s) 105
Hin1II CATG 2 cut(s) 251, 274
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 1 cut(s) 227
HpaII CCGG 5 cut(s) 97, 109, 231, 297, 407
HphI GGTGA 2 cut(s) 28, 286
Hpy166II GTNNAC 2 cut(s) 177, 354
Hpy188I TCNGA 3 cut(s) 140, 312, 385
Hpy8I GTNNAC 2 cut(s) 177, 354
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 3 cut(s) 39, 311, 338
HpyCH4III ACNGT 2 cut(s) 136, 304
HpyCH4V TGCA 4 cut(s) 132, 255, 270, 430
HpyF10VI GCNNNNNNNGC 3 cut(s) 261, 276, 427
HpyF3I CTNAG 1 cut(s) 326
Hsp92II CATG 2 cut(s) 251, 274
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 140, 307
LmnI GCTCC 2 cut(s) 15, 193
MaeIII GTNAC 1 cut(s) 111
MalI GATC 2 cut(s) 142, 309
MboI GATC 2 cut(s) 140, 307
MluCI AATT 1 cut(s) 431
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 7 cut(s) 26, 34, 50, 160, 181, 245, 403
MslI CAYNNNNRTG 1 cut(s) 361
MspI CCGG 5 cut(s) 97, 109, 231, 297, 407
MspR9I CCNGG 1 cut(s) 407
Mva1269I GAATGC 1 cut(s) 327
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 3 cut(s) 261, 276, 427
NciI CCSGG 1 cut(s) 407
NdeII GATC 2 cut(s) 140, 307
NlaIII CATG 2 cut(s) 251, 274
NlaIV GGNNCC 2 cut(s) 195, 301
NmeAIII GCCGAG 1 cut(s) 240
NmuCI GTSAC 1 cut(s) 111
PctI GAATGC 1 cut(s) 327
PfoI TCCNGGA 1 cut(s) 405
PinAI ACCGGT 1 cut(s) 108
PkrI GCNGC 2 cut(s) 102, 246
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PspN4I GGNNCC 2 cut(s) 195, 301
PspPI GGNCC 1 cut(s) 120
RsaI GTAC 3 cut(s) 54, 353, 374
RsaNI GTAC 3 cut(s) 53, 352, 373
RseI CAYNNNNRTG 1 cut(s) 361
SatI GCNGC 2 cut(s) 101, 245
Sau3AI GATC 2 cut(s) 140, 307
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 407
SetI ASST 7 cut(s) 18, 90, 153, 186, 192, 261, 291
SinI GGWCC 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 361
Sse9I AATT 1 cut(s) 431
SsiI CCGC 5 cut(s) 75, 101, 118, 245, 348
StyD4I CCNGG 1 cut(s) 405
TaaI ACNGT 2 cut(s) 136, 304
TaqI TCGA 1 cut(s) 306
TasI AATT 1 cut(s) 431
TauI GCSGC 2 cut(s) 103, 247
TscAI CASTG 1 cut(s) 432
TseFI GTSAC 1 cut(s) 111
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 2 cut(s) 69, 429
TspRI CASTG 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 120
XmiI GTMKAC 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.