pycom16g16400

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0016209
Physical Location & Seq
Reverse (-)
12318126 .. 12318886
761 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g16400.1

Sequence Viewer

Length: 561 bp
ATGAAAACTGTTCTTTTTAAAATTTGCAAAAACCTTATCCTCCTTCCACACCATAAACAACACAAAAACTGCCCCTCATTTCCCACCCCAAAAGACAAAACCCAACACACCATGGCAACTCTTCACGCCACTGCATCCCCTTCTTTCACCCTCCCAAAACATGTTCACTCCACCAAACTCTCCGCTTCGTTCCGGCTCAATCTCCGGCCTCGCCACCGCTCACGGGGGTCCTACTCTTCCGCCGTCCGATCCTACAAGGTGGTGGTGGAGCACGAGGGCCAGTCTACCGACCTTGAAGTAGAACCTGATGAGACAATACTAGAGAAGGCATTGGACTCTGGCCTCTCTGTGCCGCATGACTGCAAGCTCGGCGTGTGCATGACTTGCCCTGCCAGGCTTCTCAACGGCACGGTCGACCAGAGCGAAGGAATGCTGAGCGACGATGTGGTGGAAGGCGGGTACACATTGCTGTGCGTGTCGTACCCGAAATCGGATTGTCACATTCGGACAATCCCGGAAGATGAGCTGCTGTCGCTGCAATTAGCAACTGCTAATGACTGA

Protein Analysis

187

Amino Acids

20.59

Weight (kDa)

7.16

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 90 - 163 1e-13 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14890
fragaria_vesca FvH4_4g15630
malus_domestica MD13G1193300.v1.1
prunus_persica Prupe.1G013900_v2.0.a1
pyrus_communis pycom16g16400
rosa_chinensis RchiOBHm_Chr4g0416181
rosa_laevigata RLG00000008008
rosa_multiflora Rmu_co8387285.1_g000001
rosa_roxburghii Rroxscaffold_5G00360040
rosa_rugosa Rorug04G0139700
rosa_samantha Rh4AG201700 Rh4BG199100 Rh4CG214200 Rh4DG198900
rosa_wichuraiana Rw4G017050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 219
AccI GTMKAC 2 cut(s) 284, 414
AciI CCGC 5 cut(s) 183, 217, 240, 353, 456
AclWI GGATC 1 cut(s) 243
AcsI RAATTY 1 cut(s) 21
AfaI GTAC 2 cut(s) 461, 482
AfiI CCNNNNNNNGG 2 cut(s) 223, 490
AflIII ACRYGT 1 cut(s) 160
AgsI TTSAA 1 cut(s) 296
AjnI CCWGG 1 cut(s) 392
AluBI AGCT 2 cut(s) 367, 526
AluI AGCT 2 cut(s) 367, 526
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 1 cut(s) 243
AoxI GGCC 3 cut(s) 206, 277, 340
ApeKI GCWGC 2 cut(s) 526, 535
ApoI RAATTY 1 cut(s) 21
AspS9I GGNCC 2 cut(s) 228, 277
AsuC2I CCSGG 1 cut(s) 515
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 1 cut(s) 228
BauI CACGAG 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 2 cut(s) 513, 522
BceAI ACGGC 2 cut(s) 227, 421
BciT130I CCWGG 1 cut(s) 394
BcnI CCSGG 1 cut(s) 515
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 1 cut(s) 320
BisI GCNGC 3 cut(s) 353, 527, 536
BlpI GCTNAGC 1 cut(s) 434
BlsI GCNGC 3 cut(s) 354, 528, 537
Bme1390I CCNGG 2 cut(s) 394, 515
Bme18I GGWCC 1 cut(s) 228
BmgT120I GGNCC 2 cut(s) 228, 277
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 2 cut(s) 394, 515
BmsI GCATC 1 cut(s) 143
Bpu1102I GCTNAGC 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 515
BsaJI CCNNGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 490
Bse1I ACTGG 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 464
BseBI CCWGG 1 cut(s) 394
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 134
BseLI CCNNNNNNNGG 2 cut(s) 223, 490
BseMI GCAATG 1 cut(s) 464
BseMII CTCAG 1 cut(s) 425
BseNI ACTGG 1 cut(s) 280
BseXI GCAGC 2 cut(s) 513, 522
Bsh1285I CGRYCG 1 cut(s) 414
BshFI GGCC 3 cut(s) 208, 279, 342
BsiEI CGRYCG 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 3 cut(s) 193, 205, 515
BslI CCNNNNNNNGG 2 cut(s) 223, 490
BsmAI GTCTC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 3 cut(s) 208, 279, 342
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 1 cut(s) 248
Bsp1720I GCTNAGC 1 cut(s) 434
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 5 cut(s) 183, 217, 240, 353, 456
BspANI GGCC 3 cut(s) 208, 279, 342
BspCNI CTCAG 1 cut(s) 426
BspLI GGNNCC 1 cut(s) 229
BspPI GGATC 1 cut(s) 243
BsrBI CCGCTC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 464
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 1 cut(s) 248
BssSI CACGAG 1 cut(s) 272
BssT1I CCWWGG 1 cut(s) 111
Bst2BI CACGAG 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 394
Bst4CI ACNGT 2 cut(s) 10, 412
Bst6I CTCTTC 2 cut(s) 126, 241
BstAPI GCANNNNNTGC 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 365
BstDEI CTNAG 1 cut(s) 434
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 134
BstKTI GATC 1 cut(s) 251
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 1 cut(s) 248
BstMCI CGRYCG 1 cut(s) 414
BstMWI GCNNNNNNNGC 4 cut(s) 369, 384, 532, 535
BstNI CCWGG 1 cut(s) 394
BstNSI RCATGY 1 cut(s) 164
BstSCI CCNGG 2 cut(s) 392, 513
BstV1I GCAGC 2 cut(s) 513, 522
BsuRI GGCC 3 cut(s) 208, 279, 342
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 1 cut(s) 134
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 365
Cfr13I GGNCC 2 cut(s) 228, 277
Csp6I GTAC 2 cut(s) 460, 481
CviAII CATG 4 cut(s) 112, 161, 356, 379
CviJI RGCY 7 cut(s) 196, 208, 279, 342, 367, 397, 526
CviKI_1 RGCY 7 cut(s) 196, 208, 279, 342, 367, 397, 526
CviQI GTAC 2 cut(s) 460, 481
DdeI CTNAG 1 cut(s) 434
DpnI GATC 1 cut(s) 250
DpnII GATC 1 cut(s) 248
DraI TTTAAA 1 cut(s) 19
Eam1104I CTCTTC 2 cut(s) 126, 241
EarI CTCTTC 2 cut(s) 126, 241
EciI GGCGGA 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 228
EcoO109I RGGNCCY 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 392
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 4 cut(s) 115, 164, 359, 382
FaiI YATR 5 cut(s) 54, 113, 162, 357, 380
FatI CATG 4 cut(s) 111, 160, 355, 378
FauI CCCGC 1 cut(s) 449
FblI GTMKAC 2 cut(s) 284, 414
Fnu4HI GCNGC 3 cut(s) 353, 527, 536
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 3 cut(s) 353, 527, 536
FspBI CTAG 1 cut(s) 320
GluI GCNGC 3 cut(s) 353, 527, 536
HaeIII GGCC 3 cut(s) 208, 279, 342
HapII CCGG 3 cut(s) 193, 205, 515
Hin1II CATG 4 cut(s) 115, 164, 359, 382
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 1 cut(s) 335
HpaII CCGG 3 cut(s) 193, 205, 515
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 4 cut(s) 166, 285, 415, 462
Hpy188I TCNGA 3 cut(s) 248, 493, 507
Hpy8I GTNNAC 4 cut(s) 166, 285, 415, 462
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 5 cut(s) 53, 150, 319, 419, 446
HpyCH4III ACNGT 2 cut(s) 10, 412
HpyCH4V TGCA 5 cut(s) 27, 134, 363, 378, 538
HpyF10VI GCNNNNNNNGC 4 cut(s) 369, 384, 532, 535
HpyF3I CTNAG 1 cut(s) 434
Hsp92II CATG 4 cut(s) 115, 164, 359, 382
Kzo9I GATC 1 cut(s) 248
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 2 cut(s) 513, 522
LweI GCATC 1 cut(s) 143
MaeI CTAG 1 cut(s) 320
MaeIII GTNAC 1 cut(s) 497
MalI GATC 1 cut(s) 250
MbiI CCGCTC 1 cut(s) 219
MboI GATC 1 cut(s) 248
MboII GAAGA 3 cut(s) 113, 228, 530
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 2 cut(s) 21, 539
MlyI GAGTC 1 cut(s) 329
MnlI CCTC 6 cut(s) 50, 85, 161, 219, 268, 353
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 469
MspI CCGG 3 cut(s) 193, 205, 515
MspR9I CCNGG 2 cut(s) 394, 515
Mva1269I GAATGC 1 cut(s) 435
MvaI CCWGG 1 cut(s) 394
MwoI GCNNNNNNNGC 4 cut(s) 369, 384, 532, 535
NciI CCSGG 1 cut(s) 515
NcoI CCATGG 1 cut(s) 111
NdeII GATC 1 cut(s) 248
NlaIII CATG 4 cut(s) 115, 164, 359, 382
NlaIV GGNNCC 1 cut(s) 229
NmeAIII GCCGAG 1 cut(s) 348
NmuCI GTSAC 1 cut(s) 497
NspI RCATGY 1 cut(s) 164
PciI ACATGT 1 cut(s) 160
PcsI WCGNNNNNNNCGW 2 cut(s) 411, 420
PctI GAATGC 1 cut(s) 435
PfoI TCCNGGA 1 cut(s) 513
PkrI GCNGC 3 cut(s) 354, 528, 537
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
PpuMI RGGWCCY 1 cut(s) 228
PscI ACATGT 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 392
PspGI CCWGG 1 cut(s) 392
PspN4I GGNNCC 1 cut(s) 229
PspPI GGNCC 2 cut(s) 228, 277
PspPPI RGGWCCY 1 cut(s) 228
RsaI GTAC 2 cut(s) 461, 482
RsaNI GTAC 2 cut(s) 460, 481
RseI CAYNNNNRTG 1 cut(s) 469
SalI GTCGAC 1 cut(s) 413
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 3 cut(s) 353, 527, 536
Sau3AI GATC 1 cut(s) 248
Sau96I GGNCC 2 cut(s) 228, 277
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 2 cut(s) 394, 515
SduI GDGCHC 1 cut(s) 273
SetI ASST 6 cut(s) 36, 261, 294, 307, 369, 528
SfaNI GCATC 1 cut(s) 143
SinI GGWCC 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 469
Sse9I AATT 2 cut(s) 21, 539
SsiI CCGC 5 cut(s) 183, 217, 240, 353, 456
SspMI CTAG 1 cut(s) 320
StyD4I CCNGG 2 cut(s) 392, 513
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 10, 412
TaqI TCGA 1 cut(s) 414
TasI AATT 2 cut(s) 21, 539
TauI GCSGC 1 cut(s) 355
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 2 cut(s) 526, 535
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 228
XapI RAATTY 1 cut(s) 21
XceI RCATGY 1 cut(s) 164
XmiI GTMKAC 2 cut(s) 284, 414
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.