FvH4_4g15630

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016209
Physical Location & Seq
Reverse (-)
19480165 .. 19480995
831 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15630.t1

Sequence Viewer

Length: 453 bp
ATGGCAACCCTTCACTTCACTCCATCTCCTTGTTTCGCTCTCAACCCAAAACAGTCGCACCCGACCATACTGCCCTCTCCTTTTCAGCTCAGTCTCCGGCCAAAACGACACCGTACACGGCGGCAGTGGAATGTGGTCCGGTCGTACAAGGTTGTGGTGGAGCACGAGGGCAAGTCCACTGAACTCGAGGTGGAGGAAGATGAGACCATACTAGACAAGGCATTGGAGTCTGGATTGTCTGTGCCGCACGACTGCAAGCTTGGGGTGTGCATGACTTGCCCGGCTAAGCTTATCGGCGGCGGGGTGGACCAGAGTGAAGGTATGCTGAGTGATGATGTGGTGGAGAGGGGGTATACATTGCTCTGTGTTTCGTACCCCAAATCAGATTGTCACATTCGGACCATTCCGGAAGAGGAGCTGCTCTCACTCCAATTAGCAACAGCTAATGACTAA

Protein Analysis

151

Amino Acids

16.71

Weight (kDa)

5.67

Isoelectric Point (pI)

66.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 54 - 127 1.4e-14 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14890
fragaria_vesca FvH4_4g15630
malus_domestica MD13G1193300.v1.1
prunus_persica Prupe.1G013900_v2.0.a1
pyrus_communis pycom16g16400
rosa_chinensis RchiOBHm_Chr4g0416181
rosa_laevigata RLG00000008008
rosa_multiflora Rmu_co8387285.1_g000001
rosa_roxburghii Rroxscaffold_5G00360040
rosa_rugosa Rorug04G0139700
rosa_samantha Rh4AG201700 Rh4BG199100 Rh4CG214200 Rh4DG198900
rosa_wichuraiana Rw4G017050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 353
AccIII TCCGGA 1 cut(s) 406
AciI CCGC 4 cut(s) 121, 245, 297, 300
AcoI YGGCCR 1 cut(s) 98
AfaI GTAC 3 cut(s) 115, 146, 374
AluBI AGCT 5 cut(s) 88, 259, 289, 418, 443
AluI AGCT 5 cut(s) 88, 259, 289, 418, 443
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 2 cut(s) 98, 197
Ama87I CYCGRG 1 cut(s) 185
Aor13HI TCCGGA 1 cut(s) 406
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 418
AspS9I GGNCC 3 cut(s) 136, 307, 399
AsuC2I CCSGG 1 cut(s) 281
AvaI CYCGRG 1 cut(s) 185
AvaII GGWCC 3 cut(s) 136, 307, 399
BauI CACGAG 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 405
BccI CCATC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 134
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BcnI CCSGG 1 cut(s) 281
BcoDI GTCTC 2 cut(s) 98, 197
BfaI CTAG 1 cut(s) 212
BisI GCNGC 4 cut(s) 122, 245, 298, 419
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 4 cut(s) 123, 246, 299, 420
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 3 cut(s) 136, 307, 399
BmeT110I CYCGRG 1 cut(s) 185
BmgT120I GGNCC 3 cut(s) 136, 307, 399
BmrFI CCNGG 1 cut(s) 281
BplI GAGNNNNNCTC 2 cut(s) 407, 439
Bpu1102I GCTNAGC 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 197
BsaWI WCCGGW 2 cut(s) 138, 406
BsaXI ACNNNNNCTCC 4 cut(s) 10, 40, 335, 365
Bse3DI GCAATG 1 cut(s) 356
BseAI TCCGGA 1 cut(s) 406
BseMI GCAATG 1 cut(s) 356
BseMII CTCAG 2 cut(s) 103, 317
BseRI GAGGAG 1 cut(s) 428
BseXI GCAGC 1 cut(s) 405
Bsh1285I CGRYCG 1 cut(s) 143
BshFI GGCC 1 cut(s) 100
BsiEI CGRYCG 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 4 cut(s) 97, 139, 281, 407
BsmAI GTCTC 2 cut(s) 98, 197
BsnI GGCC 1 cut(s) 100
Bso31I GGTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 165
Bsp13I TCCGGA 1 cut(s) 406
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 4 cut(s) 121, 245, 297, 300
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 2 cut(s) 102, 318
BspEI TCCGGA 1 cut(s) 406
BspTNI GGTCTC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 356
BssNAI GTATAC 1 cut(s) 354
BssSI CACGAG 1 cut(s) 164
Bst1107I GTATAC 1 cut(s) 354
Bst2BI CACGAG 1 cut(s) 164
Bst4CI ACNGT 2 cut(s) 54, 113
Bst6I CTCTTC 1 cut(s) 405
BstAPI GCANNNNNTGC 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 257
BstDEI CTNAG 3 cut(s) 89, 285, 326
BstMAI GTCTC 2 cut(s) 98, 197
BstMCI CGRYCG 1 cut(s) 143
BstMWI GCNNNNNNNGC 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 405
BstZ17I GTATAC 1 cut(s) 354
BsuRI GGCC 1 cut(s) 100
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 2 cut(s) 131, 177
Cac8I GCNNGC 1 cut(s) 257
Cfr13I GGNCC 3 cut(s) 136, 307, 399
Csp6I GTAC 3 cut(s) 114, 145, 373
CviAII CATG 1 cut(s) 271
CviJI RGCY 7 cut(s) 88, 100, 259, 284, 289, 418, 443
CviKI_1 RGCY 7 cut(s) 88, 100, 259, 284, 289, 418, 443
CviQI GTAC 3 cut(s) 114, 145, 373
DdeI CTNAG 3 cut(s) 89, 285, 326
EaeI YGGCCR 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco31I GGTCTC 1 cut(s) 197
Eco47I GGWCC 3 cut(s) 136, 307, 399
Eco88I CYCGRG 1 cut(s) 185
FaeI CATG 1 cut(s) 274
FaiI YATR 5 cut(s) 68, 209, 272, 323, 354
FatI CATG 1 cut(s) 270
FauI CCCGC 1 cut(s) 293
FblI GTMKAC 1 cut(s) 353
Fnu4HI GCNGC 4 cut(s) 122, 245, 298, 419
Fsp4HI GCNGC 4 cut(s) 122, 245, 298, 419
FspBI CTAG 1 cut(s) 212
GluI GCNGC 4 cut(s) 122, 245, 298, 419
HaeIII GGCC 1 cut(s) 100
HapII CCGG 4 cut(s) 97, 139, 281, 407
Hin1II CATG 1 cut(s) 274
HindIII AAGCTT 2 cut(s) 257, 287
HinfI GANTC 1 cut(s) 227
HpaII CCGG 4 cut(s) 97, 139, 281, 407
Hpy166II GTNNAC 4 cut(s) 116, 177, 307, 354
Hpy188I TCNGA 2 cut(s) 385, 399
Hpy188III TCNNGA 2 cut(s) 231, 407
Hpy8I GTNNAC 4 cut(s) 116, 177, 307, 354
HpyAV CCTTC 2 cut(s) 20, 311
HpyCH4III ACNGT 2 cut(s) 54, 113
HpyCH4V TGCA 2 cut(s) 255, 270
HpyF10VI GCNNNNNNNGC 1 cut(s) 276
HpyF3I CTNAG 3 cut(s) 89, 285, 326
Hsp92II CATG 1 cut(s) 274
Kpn2I TCCGGA 1 cut(s) 406
LmnI GCTCC 2 cut(s) 160, 415
LpnPI CCDG 6 cut(s) 110, 152, 216, 294, 323, 420
Lsp1109I GCAGC 1 cut(s) 405
MaeI CTAG 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 389
MboII GAAGA 2 cut(s) 209, 422
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 1 cut(s) 431
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 6 cut(s) 85, 160, 181, 187, 339, 406
MroI TCCGGA 1 cut(s) 406
MspI CCGG 4 cut(s) 97, 139, 281, 407
MspR9I CCNGG 1 cut(s) 281
MwoI GCNNNNNNNGC 1 cut(s) 276
NciI CCSGG 1 cut(s) 281
NlaIII CATG 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 389
PaeR7I CTCGAG 1 cut(s) 185
PkrI GCNGC 4 cut(s) 123, 246, 299, 420
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PspPI GGNCC 3 cut(s) 136, 307, 399
PspXI VCTCGAGB 1 cut(s) 185
RsaI GTAC 3 cut(s) 115, 146, 374
RsaNI GTAC 3 cut(s) 114, 145, 373
SatI GCNGC 4 cut(s) 122, 245, 298, 419
Sau96I GGNCC 3 cut(s) 136, 307, 399
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 281
SduI GDGCHC 1 cut(s) 165
SetI ASST 8 cut(s) 90, 153, 192, 261, 291, 322, 420, 445
Sfr274I CTCGAG 1 cut(s) 185
SinI GGWCC 3 cut(s) 136, 307, 399
SlaI CTCGAG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 1 cut(s) 431
SsiI CCGC 4 cut(s) 121, 245, 297, 300
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 279
TaaI ACNGT 2 cut(s) 54, 113
TaqI TCGA 1 cut(s) 186
TasI AATT 1 cut(s) 431
TauI GCSGC 3 cut(s) 124, 247, 300
TscAI CASTG 2 cut(s) 131, 184
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 1 cut(s) 418
Tsp45I GTSAC 1 cut(s) 389
TspRI CASTG 2 cut(s) 131, 184
VpaK11BI GGWCC 3 cut(s) 136, 307, 399
XhoI CTCGAG 1 cut(s) 185
XmiI GTMKAC 1 cut(s) 353
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.