AT4G15030

Folate-sensitive fragile site protein Fra10Ac1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014301
Physical Location & Seq
Forward (+)
8578741 .. 8582247
3507 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G15030.3

Sequence Viewer

Length: 837 bp
ATGACTTCTTCGGCGGCGATCAGATCTGACATCTACGACAGAGAAGAACGCAAGCAGCAATACCAAGCACATATTCGTGGCCTGAATGCTTACGAGCGGCATAAGAAGTTCTTGAAAGACTACGTTCGATTTTATGGGAAGGATAAGCCTGCAGAAGTTAAGTTACCGGTTAAAACTGATCAGGACACACTACGAGAAGGATACAGGTTTATACGTTCTGAAGAAGATGATTTGGATCCTTCTTGGGAGCAAAGACTGGTGAAACGATACTATGATAAGCTTTTTAAAGAATACTGTATAGCTGACATGTCAAGGTACAAGACTGGTAAGATGGGTTTAAGATGGAGAACAGAAAAGGAAGTAATGACTGGGAAAGGGCAGTTTATGTGTGGGAGCAAACATTGTGATGAAAAGGAAGGGTTAGCAAGCTATGAGGTGAATTTTTCTTATCATGAAGCTGGAGAAGATAAACAAGCTCTTGTAAAACTCGTAGCTTGTGAGAGATGTGCTGAGAAGTTATACTACAAAAAAAGAAAGGAGGGTGAAAGATCAGAGAGTAAAGAAAAGAAAAAACAGAAACGAAAACGGAGTAAATCACACAGTGAAGATGACACAGACGAAGAGGAGAAAAGAAAAGAGGGTGAAAGATCAGAGAGTAATGAAAAGAAAAAACAGAAACGAAATCGGAGTCAATCTCACAGTGAATATGACACTGACGAAGAGGATAGGAGAAAAGGGAAAACAAGAAAGTCCAAGTTGGAAAGTGCTGATAGAGAAGGCAAGGATGATGAAAACTTCGATGAATACATGGAGGGGATGTTCCCGGGTAATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fra10Ac1

Protein Analysis

278

Amino Acids

33.21

Weight (kDa)

8.86

Isoelectric Point (pI)

58.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fra10Ac1 PF09725 63 - 179 1.1e-49 Folate-sensitive fragile site protein Fra10Ac1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15030 AT4G15030 AT4G15030
fragaria_vesca FvH4_7g01110
malus_domestica MD02G1310300.v1.1 MD07G1011200.v1.1
prunus_persica Prupe.2G014400_v2.0.a1
pyrus_communis pycom07g00930
rosa_chinensis RchiOBHm_Chr1g0316111
rosa_laevigata RLG00000030694
rosa_multiflora Rmu_sc0002531.1_g000028
rosa_roxburghii Rroxscaffold_4G00331130
rosa_rugosa Rorug01G0009100
rosa_samantha Rh1AG019100 Rh1BG014100 Rh1CG016700
rosa_wichuraiana Rw1G001240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 97
AciI CCGC 2 cut(s) 14, 97
AclWI GGATC 2 cut(s) 230, 243
AcsI RAATTY 1 cut(s) 439
AcuI CTGAAG 1 cut(s) 240
AdeI CACNNNGTG 1 cut(s) 602
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 830
AflIII ACRYGT 1 cut(s) 306
AgeI ACCGGT 1 cut(s) 166
AgsI TTSAA 1 cut(s) 115
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
AloI GAACNNNNNNTCC 2 cut(s) 803, 835
AluBI AGCT 6 cut(s) 280, 302, 429, 458, 476, 494
AluI AGCT 6 cut(s) 280, 302, 429, 458, 476, 494
AlwI GGATC 2 cut(s) 230, 243
Ama87I CYCGRG 1 cut(s) 823
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 55
ApoI RAATTY 1 cut(s) 439
ArsI GACNNNNNNTTYG 2 cut(s) 673, 705
AsiGI ACCGGT 1 cut(s) 166
AsuC2I CCSGG 2 cut(s) 824, 825
AsuHPI GGTGA 4 cut(s) 271, 448, 554, 653
AvaI CYCGRG 1 cut(s) 823
BamHI GGATCC 1 cut(s) 235
BarI GAAGNNNNNNTAC 4 cut(s) 147, 179, 506, 538
BbvI GCAGC 1 cut(s) 67
BccI CCATC 2 cut(s) 325, 336
BciVI GTATCC 1 cut(s) 194
BclI TGATCA 1 cut(s) 178
BcnI CCSGG 2 cut(s) 824, 825
BfmI CTRYAG 1 cut(s) 150
BfuI GTATCC 1 cut(s) 194
BglII AGATCT 1 cut(s) 23
BisI GCNGC 3 cut(s) 15, 56, 98
BlsI GCNGC 3 cut(s) 16, 57, 99
Bme1390I CCNGG 2 cut(s) 824, 825
BmeT110I CYCGRG 1 cut(s) 823
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 2 cut(s) 824, 825
BmrI ACTGGG 1 cut(s) 378
BmuI ACTGGG 1 cut(s) 378
BplI GAGNNNNNCTC 2 cut(s) 679, 711
BpmI CTGGAG 1 cut(s) 480
BpuMI CCSGG 2 cut(s) 824, 825
BsaBI GATNNNNATC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 823
BsaWI WCCGGW 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 803, 833
Bsc4I CCNNNNNNNGG 1 cut(s) 830
Bse118I RCCGGY 1 cut(s) 166
Bse1I ACTGG 3 cut(s) 261, 328, 373
Bse8I GATNNNNATC 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 823
BseGI GGATG 2 cut(s) 790, 822
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 830
BseMII CTCAG 1 cut(s) 501
BseNI ACTGG 3 cut(s) 261, 328, 373
BseRI GAGGAG 1 cut(s) 638
BseXI GCAGC 1 cut(s) 67
BshFI GGCC 1 cut(s) 81
BshTI ACCGGT 1 cut(s) 166
BsiHKCI CYCGRG 1 cut(s) 823
BsiSI CCGG 2 cut(s) 167, 824
BslI CCNNNNNNNGG 1 cut(s) 830
BsmI GAATGC 1 cut(s) 91
BsnI GGCC 1 cut(s) 81
BsoBI CYCGRG 1 cut(s) 823
Bsp143I GATC 6 cut(s) 18, 23, 178, 235, 548, 647
BspACI CCGC 2 cut(s) 14, 97
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 1 cut(s) 502
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 237
BspMAI CTGCAG 1 cut(s) 154
BspPI GGATC 2 cut(s) 230, 243
BsrBI CCGCTC 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 166
BsrI ACTGG 3 cut(s) 261, 328, 373
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 823
BssMI GATC 6 cut(s) 18, 23, 178, 235, 548, 647
Bst4CI ACNGT 3 cut(s) 296, 602, 701
Bst6I CTCTTC 2 cut(s) 615, 714
BstC8I GCNNGC 3 cut(s) 53, 150, 427
BstDEI CTNAG 1 cut(s) 510
BstF5I GGATG 2 cut(s) 790, 822
BstKTI GATC 6 cut(s) 21, 26, 181, 238, 551, 650
BstMBI GATC 6 cut(s) 18, 23, 178, 235, 548, 647
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 2 cut(s) 822, 823
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 2 cut(s) 23, 235
BstYI RGATCY 2 cut(s) 23, 235
BsuI GTATCC 1 cut(s) 194
BsuRI GGCC 1 cut(s) 81
BtsCI GGATG 2 cut(s) 790, 822
BtsIMutI CAGTG 3 cut(s) 607, 706, 711
Cac8I GCNNGC 3 cut(s) 53, 150, 427
CciI TCATGA 1 cut(s) 451
Cfr10I RCCGGY 1 cut(s) 166
Cfr9I CCCGGG 1 cut(s) 823
Csp6I GTAC 1 cut(s) 316
CspAI ACCGGT 1 cut(s) 166
CviAII CATG 3 cut(s) 307, 452, 808
CviJI RGCY 8 cut(s) 81, 148, 280, 302, 429, 458, 476, 494
CviKI_1 RGCY 8 cut(s) 81, 148, 280, 302, 429, 458, 476, 494
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 1 cut(s) 510
DpnI GATC 6 cut(s) 20, 25, 180, 237, 550, 649
DpnII GATC 6 cut(s) 18, 23, 178, 235, 548, 647
DraI TTTAAA 1 cut(s) 286
DraIII CACNNNGTG 1 cut(s) 602
Eam1104I CTCTTC 2 cut(s) 615, 714
EarI CTCTTC 2 cut(s) 615, 714
Eco57I CTGAAG 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 823
FaeI CATG 3 cut(s) 310, 455, 811
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FatI CATG 3 cut(s) 306, 451, 807
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 3 cut(s) 15, 56, 98
FokI GGATG 2 cut(s) 797, 829
Fsp4HI GCNGC 3 cut(s) 15, 56, 98
GluI GCNGC 3 cut(s) 15, 56, 98
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 1 cut(s) 81
HapII CCGG 2 cut(s) 167, 824
Hin1II CATG 3 cut(s) 310, 455, 811
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 1 cut(s) 688
HpaII CCGG 2 cut(s) 167, 824
HphI GGTGA 4 cut(s) 271, 448, 554, 653
Hpy188I TCNGA 6 cut(s) 23, 28, 220, 553, 652, 687
Hpy188III TCNNGA 3 cut(s) 112, 182, 452
HpyAV CCTTC 5 cut(s) 133, 191, 249, 410, 770
HpyCH4III ACNGT 3 cut(s) 296, 602, 701
HpyCH4IV ACGT 2 cut(s) 123, 214
HpyCH4V TGCA 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 510
HpySE526I ACGT 2 cut(s) 123, 214
Hsp92II CATG 3 cut(s) 310, 455, 811
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 6 cut(s) 18, 23, 178, 235, 548, 647
LmnI GCTCC 2 cut(s) 247, 393
LpnPI CCDG 9 cut(s) 95, 162, 167, 180, 190, 242, 309, 354, 444
Lsp1109I GCAGC 1 cut(s) 67
MaeII ACGT 2 cut(s) 123, 214
MaeIII GTNAC 1 cut(s) 162
MalI GATC 6 cut(s) 20, 25, 180, 237, 550, 649
MbiI CCGCTC 1 cut(s) 97
MboI GATC 6 cut(s) 18, 23, 178, 235, 548, 647
MboII GAAGA 7 cut(s) 56, 233, 236, 476, 617, 632, 731
MflI RGATCY 2 cut(s) 23, 235
MluCI AATT 1 cut(s) 439
MlyI GAGTC 1 cut(s) 697
MmeI TCCRAC 1 cut(s) 738
MnlI CCTC 6 cut(s) 427, 532, 616, 631, 715, 805
MseI TTAA 4 cut(s) 159, 171, 285, 338
MslI CAYNNNNRTG 2 cut(s) 75, 405
MspI CCGG 2 cut(s) 167, 824
MspR9I CCNGG 2 cut(s) 824, 825
Mva1269I GAATGC 1 cut(s) 91
NciI CCSGG 2 cut(s) 824, 825
NdeII GATC 6 cut(s) 18, 23, 178, 235, 548, 647
NlaIII CATG 3 cut(s) 310, 455, 811
NlaIV GGNNCC 1 cut(s) 237
NspI RCATGY 1 cut(s) 310
PagI TCATGA 1 cut(s) 451
PciI ACATGT 1 cut(s) 306
PctI GAATGC 1 cut(s) 91
PinAI ACCGGT 1 cut(s) 166
PkrI GCNGC 3 cut(s) 16, 57, 99
PleI GAGTC 1 cut(s) 696
PpsI GAGTC 1 cut(s) 696
PscI ACATGT 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 237
PstI CTGCAG 1 cut(s) 154
PsuI RGATCY 2 cut(s) 23, 235
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 2 cut(s) 75, 405
SaqAI TTAA 4 cut(s) 159, 171, 285, 338
SatI GCNGC 3 cut(s) 15, 56, 98
Sau3AI GATC 6 cut(s) 18, 23, 178, 235, 548, 647
SchI GAGTC 1 cut(s) 697
ScrFI CCNGG 2 cut(s) 824, 825
SfcI CTRYAG 1 cut(s) 150
SmaI CCCGGG 1 cut(s) 825
SmiMI CAYNNNNRTG 2 cut(s) 75, 405
Sse9I AATT 1 cut(s) 439
SsiI CCGC 2 cut(s) 14, 97
StyD4I CCNGG 2 cut(s) 822, 823
TaaI ACNGT 3 cut(s) 296, 602, 701
TaiI ACGT 2 cut(s) 126, 217
TaqI TCGA 2 cut(s) 127, 798
TasI AATT 1 cut(s) 439
TauI GCSGC 2 cut(s) 17, 100
Tru1I TTAA 4 cut(s) 159, 171, 285, 338
Tru9I TTAA 4 cut(s) 159, 171, 285, 338
TscAI CASTG 3 cut(s) 607, 706, 718
TseI GCWGC 1 cut(s) 55
TspDTI ATGAA 5 cut(s) 423, 468, 675, 804, 816
TspGWI ACGGA 1 cut(s) 601
TspMI CCCGGG 1 cut(s) 823
TspRI CASTG 3 cut(s) 607, 706, 718
XapI RAATTY 1 cut(s) 439
XceI RCATGY 1 cut(s) 310
XmaI CCCGGG 1 cut(s) 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.