FvH4_7g01110

Folate-sensitive fragile site protein Fra10Ac1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014301
Physical Location & Seq
Forward (+)
1527414 .. 1532941
5528 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g01110.t1

Sequence Viewer

Length: 738 bp
ATGGCCTCTTTTGCGTCCTTGAAATCGACAATCTTCGATAGAGAAGAGCGAAAACGGCAGTACCAGGATCACATTCGCGGCCTCAACGCTTACGAACGCCACAACAAGTTCGTCAAAGATTACGTTAGCTATTATGGTGGAGAGAAGTCTTCACATGTGAAGTTGCCTGTCAAAACTGATCAAGACACACTAAGAGAAGGGTACCGGTTTATAAGATCGGAGGAAGATGACATGGACACATCTTGGGAGCAGAGGCTGGTGAAGCGATACTATGACAAGTTGTTTAAAGAATATTGCATAGCTGACATGTCACATTACAAGAGTGGTAAGATTGGCCTTAGGTGGAGAACAGAAAAAGAAGTTGTATCTGGTAAAGGGCAGTTCATATGTGGTAGCAAACATTGCGACAAGAAAGATGCCTTAGCGAGCTACGAGGTGAACTTCTCTTATTATGAAGCTGGAGAAAATAAACAAGCGCTGATCAAATTGGTAACTTGTGAGAGATGTTCAAAAAAGCTTCACTACAAACGACGAAAAGAGAAGGAGCACATGGATAAAGAAAAAAATGAAGTGAACAGAAGAAAGAGGGACCGGTCAGGGGACGGTGATGACACTGATGATGAGGGAAGCAAGGAGAGGAGAAAAGGAAAAAAGGCTTCACTTTCCACAAGTGATAACAGAGTCAATGATGAAGACGATGATAACTTTGACGAGTATCTTGAGGGAATGTTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fra10Ac1

Protein Analysis

246

Amino Acids

29.07

Weight (kDa)

8.58

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fra10Ac1 PF09725 59 - 175 1.5e-50 Folate-sensitive fragile site protein Fra10Ac1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15030 AT4G15030 AT4G15030
fragaria_vesca FvH4_7g01110
malus_domestica MD02G1310300.v1.1 MD07G1011200.v1.1
prunus_persica Prupe.2G014400_v2.0.a1
pyrus_communis pycom07g00930
rosa_chinensis RchiOBHm_Chr1g0316111
rosa_laevigata RLG00000030694
rosa_multiflora Rmu_sc0002531.1_g000028
rosa_roxburghii Rroxscaffold_4G00331130
rosa_rugosa Rorug01G0009100
rosa_samantha Rh1AG019100 Rh1BG014100 Rh1CG016700
rosa_wichuraiana Rw1G001240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 212
Acc65I GGTACC 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 201
AccII CGCG 1 cut(s) 78
AciI CCGC 1 cut(s) 78
AclWI GGATC 1 cut(s) 75
AfaI GTAC 2 cut(s) 62, 203
AfeI AGCGCT 1 cut(s) 477
AfiI CCNNNNNNNGG 1 cut(s) 598
AflIII ACRYGT 2 cut(s) 154, 306
AgeI ACCGGT 2 cut(s) 204, 591
AgsI TTSAA 2 cut(s) 22, 510
AjnI CCWGG 1 cut(s) 63
AluBI AGCT 5 cut(s) 129, 302, 429, 458, 517
AluI AGCT 5 cut(s) 129, 302, 429, 458, 517
Alw21I GWGCWC 1 cut(s) 549
AlwI GGATC 1 cut(s) 75
AlwNI CAGNNNCTG 1 cut(s) 256
Aor51HI AGCGCT 1 cut(s) 477
AoxI GGCC 3 cut(s) 3, 79, 334
AsiGI ACCGGT 2 cut(s) 204, 591
Asp718I GGTACC 1 cut(s) 201
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 1 cut(s) 589
AsuHPI GGTGA 3 cut(s) 271, 448, 617
AvaII GGWCC 1 cut(s) 589
AxyI CCTNAGG 1 cut(s) 338
BaeI ACNNNNGTAYC 2 cut(s) 44, 77
BanI GGYRCC 1 cut(s) 201
BbsI GAAGAC 2 cut(s) 141, 699
Bbv12I GWGCWC 1 cut(s) 549
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 65
BclI TGATCA 2 cut(s) 178, 480
BfoI RGCGCY 1 cut(s) 479
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 589
BmgT120I GGNCC 1 cut(s) 589
BmiI GGNNCC 2 cut(s) 203, 590
BmrFI CCNGG 1 cut(s) 65
BmsI GCATC 1 cut(s) 406
BpiI GAAGAC 2 cut(s) 141, 699
BpmI CTGGAG 1 cut(s) 480
Bpu10I CCTNAGC 1 cut(s) 421
BsaWI WCCGGW 2 cut(s) 204, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 598
Bse118I RCCGGY 2 cut(s) 204, 591
Bse21I CCTNAGG 1 cut(s) 338
Bse3DI GCAATG 1 cut(s) 400
BseBI CCWGG 1 cut(s) 65
BseLI CCNNNNNNNGG 1 cut(s) 598
BseMI GCAATG 1 cut(s) 400
BseRI GAGGAG 1 cut(s) 652
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 3 cut(s) 5, 81, 336
BshNI GGYRCC 1 cut(s) 201
BshTI ACCGGT 2 cut(s) 204, 591
BsiHKAI GWGCWC 1 cut(s) 549
BsiSI CCGG 2 cut(s) 205, 592
BslFI GGGAC 2 cut(s) 602, 614
BslI CCNNNNNNNGG 1 cut(s) 598
BsmFI GGGAC 2 cut(s) 602, 614
BsnI GGCC 3 cut(s) 5, 81, 336
Bsp1286I GDGCHC 1 cut(s) 549
Bsp143I GATC 4 cut(s) 67, 178, 215, 480
BspACI CCGC 1 cut(s) 78
BspANI GGCC 3 cut(s) 5, 81, 336
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 203, 590
BspPI GGATC 1 cut(s) 75
BspQI GCTCTTC 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 400
BsrFI RCCGGY 2 cut(s) 204, 591
BssAI RCCGGY 2 cut(s) 204, 591
BssMI GATC 4 cut(s) 67, 178, 215, 480
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 605
Bst6I CTCTTC 1 cut(s) 39
BstAPI GCANNNNNTGC 1 cut(s) 402
BstC8I GCNNGC 1 cut(s) 427
BstDEI CTNAG 3 cut(s) 191, 338, 421
BstFNI CGCG 1 cut(s) 78
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 4 cut(s) 70, 181, 218, 483
BstMBI GATC 4 cut(s) 67, 178, 215, 480
BstMWI GCNNNNNNNGC 4 cut(s) 11, 55, 262, 402
BstNI CCWGG 1 cut(s) 65
BstNSI RCATGY 2 cut(s) 158, 310
BstSCI CCNGG 1 cut(s) 63
BstUI CGCG 1 cut(s) 78
BstV2I GAAGAC 2 cut(s) 141, 699
Bsu36I CCTNAGG 1 cut(s) 338
BsuRI GGCC 3 cut(s) 5, 81, 336
BtsIMutI CAGTG 1 cut(s) 612
Cac8I GCNNGC 1 cut(s) 427
CaiI CAGNNNCTG 1 cut(s) 256
CfoI GCGC 1 cut(s) 478
Cfr10I RCCGGY 2 cut(s) 204, 591
Cfr13I GGNCC 1 cut(s) 589
CseI GACGC 1 cut(s) 3
Csp6I GTAC 2 cut(s) 61, 202
CspAI ACCGGT 2 cut(s) 204, 591
CviAII CATG 4 cut(s) 155, 232, 307, 550
CviQI GTAC 2 cut(s) 61, 202
DdeI CTNAG 3 cut(s) 191, 338, 421
DpnI GATC 4 cut(s) 69, 180, 217, 482
DpnII GATC 4 cut(s) 67, 178, 215, 480
DraI TTTAAA 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 589
Eco47III AGCGCT 1 cut(s) 477
Eco81I CCTNAGG 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 63
FaeI CATG 4 cut(s) 158, 235, 310, 553
FaqI GGGAC 2 cut(s) 602, 614
FatI CATG 4 cut(s) 154, 231, 306, 549
FauNDI CATATG 1 cut(s) 386
FbaI TGATCA 2 cut(s) 178, 480
Fnu4HI GCNGC 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 79
GlaI GCGC 1 cut(s) 477
GluI GCNGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 480
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 3 cut(s) 5, 81, 336
HapII CCGG 2 cut(s) 205, 592
HgaI GACGC 1 cut(s) 3
HhaI GCGC 1 cut(s) 478
Hin1II CATG 4 cut(s) 158, 235, 310, 553
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 1 cut(s) 681
HpaII CCGG 2 cut(s) 205, 592
HphI GGTGA 3 cut(s) 271, 448, 617
Hpy166II GTNNAC 2 cut(s) 439, 574
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 2 cut(s) 182, 719
Hpy8I GTNNAC 2 cut(s) 439, 574
Hpy99I CGWCG 1 cut(s) 534
HpyAV CCTTC 2 cut(s) 191, 535
HpyCH4III ACNGT 1 cut(s) 605
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 297
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 55, 262, 402
HpyF3I CTNAG 3 cut(s) 191, 338, 421
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 4 cut(s) 158, 235, 310, 553
HspAI GCGC 1 cut(s) 476
KpnI GGTACC 1 cut(s) 205
Ksp22I TGATCA 2 cut(s) 178, 480
Kzo9I GATC 4 cut(s) 67, 178, 215, 480
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 2 cut(s) 247, 544
LpnPI CCDG 9 cut(s) 50, 77, 180, 218, 242, 354, 444, 582, 605
LweI GCATC 1 cut(s) 406
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 2 cut(s) 309, 490
MalI GATC 4 cut(s) 69, 180, 217, 482
MboI GATC 4 cut(s) 67, 178, 215, 480
MboII GAAGA 6 cut(s) 25, 56, 141, 236, 591, 704
MhlI GDGCHC 1 cut(s) 549
MluCI AATT 1 cut(s) 485
MlyI GAGTC 1 cut(s) 690
MnlI CCTC 9 cut(s) 16, 92, 214, 246, 427, 579, 616, 630, 715
MseI TTAA 1 cut(s) 285
MspI CCGG 2 cut(s) 205, 592
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 4 cut(s) 11, 55, 262, 402
NdeI CATATG 1 cut(s) 386
NdeII GATC 4 cut(s) 67, 178, 215, 480
NlaIII CATG 4 cut(s) 158, 235, 310, 553
NlaIV GGNNCC 2 cut(s) 203, 590
NmuCI GTSAC 1 cut(s) 309
NspI RCATGY 2 cut(s) 158, 310
PciI ACATGT 2 cut(s) 154, 306
PciSI GCTCTTC 1 cut(s) 39
PinAI ACCGGT 2 cut(s) 204, 591
PkrI GCNGC 1 cut(s) 80
PleI GAGTC 1 cut(s) 689
PpsI GAGTC 1 cut(s) 689
PscI ACATGT 2 cut(s) 154, 306
PsiI TTATAA 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 2 cut(s) 203, 590
PspPI GGNCC 1 cut(s) 589
PstNI CAGNNNCTG 1 cut(s) 256
RsaI GTAC 2 cut(s) 62, 203
RsaNI GTAC 2 cut(s) 61, 202
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 4 cut(s) 67, 178, 215, 480
Sau96I GGNCC 1 cut(s) 589
SchI GAGTC 1 cut(s) 690
ScrFI CCNGG 1 cut(s) 65
SduI GDGCHC 1 cut(s) 549
SetI ASST 8 cut(s) 126, 131, 304, 344, 431, 438, 460, 519
SfaNI GCATC 1 cut(s) 406
SinI GGWCC 1 cut(s) 589
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
Sse9I AATT 1 cut(s) 485
SsiI CCGC 1 cut(s) 78
SspI AATATT 1 cut(s) 293
StyD4I CCNGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 605
TaiI ACGT 1 cut(s) 126
TaqI TCGA 2 cut(s) 26, 36
TasI AATT 1 cut(s) 485
TauI GCSGC 1 cut(s) 81
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 1 cut(s) 309
Tsp45I GTSAC 1 cut(s) 309
TspDTI ATGAA 4 cut(s) 373, 468, 582, 705
TspRI CASTG 1 cut(s) 619
VpaK11BI GGWCC 1 cut(s) 589
XceI RCATGY 2 cut(s) 158, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.