Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0014301

Physical Location & Seq

Genomic Coordinates Reverse (-)

36574900 .. 36578459

Gene Structure 3560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1310300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCGTCGTTTGGGTCTTTAAAATATGCAATCTTCGACAGAGAAGAGAGAAAACAGCAGTACCAGGCTCATATTCTCGGCCTCAACGCTTACGACCGCCACAAAAAGTTCGTCAAAGATTACGTTAGCTTTTATGGTAGAGAAGCATCTTCACATGTCAAGCTGCCGGTTAAAACTGATCATGACACCCTAAGAGAAGGTCACCGGTTCATAAGATCCGAGGAAGATAATATGGACCGATCTTGGGAGCAAAGACTGGTAAAGAGTGGAGGACATAAAAGGAAGTCACATCTGGTAAAGACCATATGTGGTAACAAACATTGTGATGTAAAAGACGGTTTAGCAAGCTATGAGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fra10Ac1

Protein Analysis

120

Amino Acids

13.9

Weight (kDa)

9.37

Isoelectric Point (pI)

55.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15030 AT4G15030 AT4G15030
fragaria_vesca	FvH4_7g01110
malus_domestica	MD02G1310300.v1.1 MD07G1011200.v1.1
prunus_persica	Prupe.2G014400_v2.0.a1
pyrus_communis	pycom07g00930
rosa_chinensis	RchiOBHm_Chr1g0316111
rosa_laevigata	RLG00000030694
rosa_multiflora	Rmu_sc0002531.1_g000028
rosa_roxburghii	Rroxscaffold_4G00331130
rosa_rugosa	Rorug01G0009100
rosa_samantha	Rh1AG019100 Rh1BG014100 Rh1CG016700
rosa_wichuraiana	Rw1G001240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	1 cut(s)	210
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	244
AflIII	ACRYGT	1 cut(s)	154
AgeI	ACCGGT	1 cut(s)	204
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	3 cut(s)	129, 163, 348
AluI	AGCT	3 cut(s)	129, 163, 348
AlwI	GGATC	1 cut(s)	210
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	163
ArsI	GACNNNNNNTTYG	2 cut(s)	96, 128
AsiGI	ACCGGT	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	235
BaeI	ACNNNNGTAYC	2 cut(s)	44, 77
BbvI	GCAGC	1 cut(s)	150
BciT130I	CCWGG	1 cut(s)	65
BclI	TGATCA	1 cut(s)	178
BisI	GCNGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	165
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse118I	RCCGGY	2 cut(s)	166, 204
Bse1I	ACTGG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseNI	ACTGG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	150
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	81
BshTI	ACCGGT	1 cut(s)	204
BsiEI	CGRYCG	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	167, 205
BslI	CCNNNNNNNGG	1 cut(s)	244
BsnI	GGCC	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	178, 215, 239
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	181
BspPI	GGATC	1 cut(s)	210
BsrFI	RCCGGY	2 cut(s)	166, 204
BsrI	ACTGG	1 cut(s)	261
BssAI	RCCGGY	2 cut(s)	166, 204
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	3 cut(s)	178, 215, 239
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	1 cut(s)	191
BstEII	GGTNACC	1 cut(s)	200
BstKTI	GATC	3 cut(s)	181, 218, 242
BstMBI	GATC	3 cut(s)	178, 215, 239
BstMCI	CGRYCG	1 cut(s)	97
BstNI	CCWGG	1 cut(s)	65
BstNSI	RCATGY	1 cut(s)	158
BstPI	GGTNACC	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	63
BstV1I	GCAGC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	346
CciI	TCATGA	1 cut(s)	181
Cfr10I	RCCGGY	2 cut(s)	166, 204
Cfr13I	GGNCC	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	61
CspAI	ACCGGT	1 cut(s)	204
CviAII	CATG	2 cut(s)	155, 182
CviJI	RGCY	5 cut(s)	68, 81, 129, 163, 348
CviKI_1	RGCY	5 cut(s)	68, 81, 129, 163, 348
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	3 cut(s)	180, 217, 241
DpnII	GATC	3 cut(s)	178, 215, 239
DraI	TTTAAA	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	235
Eco91I	GGTNACC	1 cut(s)	200
EcoO65I	GGTNACC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	63
FaeI	CATG	2 cut(s)	158, 185
FatI	CATG	2 cut(s)	154, 181
FauNDI	CATATG	1 cut(s)	305
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	164
GluI	GCNGC	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	81
HapII	CCGG	2 cut(s)	167, 205
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	158, 185
HpaII	CCGG	2 cut(s)	167, 205
HphI	GGTGA	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	182
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	29
HpyF3I	CTNAG	1 cut(s)	191
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	158, 185
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	178, 215, 239
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	6 cut(s)	50, 77, 180, 218, 242, 278
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	1 cut(s)	155
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	3 cut(s)	200, 285, 311
MalI	GATC	3 cut(s)	180, 217, 241
MboI	GATC	3 cut(s)	178, 215, 239
MboII	GAAGA	4 cut(s)	25, 56, 141, 236
MflI	RGATCY	1 cut(s)	215
MnlI	CCTC	4 cut(s)	92, 214, 263, 346
MseI	TTAA	2 cut(s)	20, 171
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	2 cut(s)	167, 205
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
NdeI	CATATG	1 cut(s)	305
NdeII	GATC	3 cut(s)	178, 215, 239
NlaIII	CATG	2 cut(s)	158, 185
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	2 cut(s)	200, 285
NspI	RCATGY	1 cut(s)	158
PagI	TCATGA	1 cut(s)	181
PciI	ACATGT	1 cut(s)	154
PinAI	ACCGGT	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	165
PscI	ACATGT	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	63
PspEI	GGTNACC	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	215
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	20, 171
SatI	GCNGC	1 cut(s)	164
Sau3AI	GATC	3 cut(s)	178, 215, 239
Sau96I	GGNCC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	65
SetI	ASST	5 cut(s)	126, 131, 165, 202, 350
SfaNI	GCATC	1 cut(s)	155
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	324
SsiI	CCGC	1 cut(s)	97
StyD4I	CCNGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	36
TaqII	GACCGA	1 cut(s)	252
Tru1I	TTAA	2 cut(s)	20, 171
Tru9I	TTAA	2 cut(s)	20, 171
TseFI	GTSAC	2 cut(s)	200, 285
TseI	GCWGC	1 cut(s)	163
Tsp45I	GTSAC	2 cut(s)	200, 285
TspDTI	ATGAA	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	235
XceI	RCATGY	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.