Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002531.1

Orthogroup ID

OG0014301

Physical Location & Seq

Genomic Coordinates Reverse (-)

149472 .. 152713

Gene Structure 3242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002531.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atggcctcgtttgcgtcgttaaaatctgcaatcttcgacagagaagagcgaaaacagcagtaccaggatcacattcgcggcctcaacgcttacgaacgccacaagaagtttgtcaaagattacgttagctattatggtagagagggatcttcacacgtgaagttgcctgtcaaaactgatcaagacaccctaagagaagggtaccggtttataagatctgaggaagatgacatggacacatcttgggagcagaggctggtgaagcgatactatgacaagctgtttaaagaatattgcatagctgatatgtcacattacaagagtggtaagattggtcttaggtggaggacagaaaaggaagtcgtatccggtaaaggtaatgctattgcctgcattaactacaaaggcaccgctatcatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fra10Ac1

Protein Analysis

140

Amino Acids

16.57

Weight (kDa)

9.22

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15030 AT4G15030 AT4G15030
fragaria_vesca	FvH4_7g01110
malus_domestica	MD02G1310300.v1.1 MD07G1011200.v1.1
prunus_persica	Prupe.2G014400_v2.0.a1
pyrus_communis	pycom07g00930
rosa_chinensis	RchiOBHm_Chr1g0316111
rosa_laevigata	RLG00000030694
rosa_multiflora	Rmu_sc0002531.1_g000028
rosa_roxburghii	Rroxscaffold_4G00331130
rosa_rugosa	Rorug01G0009100
rosa_samantha	Rh1AG019100 Rh1BG014100 Rh1CG016700
rosa_wichuraiana	Rw1G001240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	212
Acc65I	GGTACC	1 cut(s)	201
AccB1I	GGYRCC	2 cut(s)	201, 407
AccII	CGCG	1 cut(s)	78
AciI	CCGC	2 cut(s)	78, 411
AclWI	GGATC	2 cut(s)	75, 154
AcvI	CACGTG	1 cut(s)	157
AfaI	GTAC	2 cut(s)	62, 203
AflIII	ACRYGT	1 cut(s)	154
AgeI	ACCGGT	1 cut(s)	204
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	3 cut(s)	129, 280, 302
AluI	AGCT	3 cut(s)	129, 280, 302
AlwI	GGATC	2 cut(s)	75, 154
AlwNI	CAGNNNCTG	1 cut(s)	256
AoxI	GGCC	2 cut(s)	3, 79
AsiGI	ACCGGT	1 cut(s)	204
Asp718I	GGTACC	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	271
BaeI	ACNNNNGTAYC	2 cut(s)	44, 77
BanI	GGYRCC	2 cut(s)	201, 407
BbrPI	CACGTG	1 cut(s)	157
BciT130I	CCWGG	1 cut(s)	65
BciVI	GTATCC	1 cut(s)	376
BclI	TGATCA	1 cut(s)	178
BfuI	GTATCC	1 cut(s)	376
BglII	AGATCT	1 cut(s)	215
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	203, 409
BmrFI	CCNGG	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	157
BsaWI	WCCGGW	2 cut(s)	204, 368
Bse118I	RCCGGY	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	5, 81
BshNI	GGYRCC	2 cut(s)	201, 407
BshTI	ACCGGT	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	205, 369
BsnI	GGCC	2 cut(s)	5, 81
Bsp143I	GATC	4 cut(s)	67, 146, 178, 215
BspACI	CCGC	2 cut(s)	78, 411
BspANI	GGCC	2 cut(s)	5, 81
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	203, 409
BspPI	GGATC	2 cut(s)	75, 154
BspQI	GCTCTTC	1 cut(s)	39
BspT107I	GGYRCC	2 cut(s)	201, 407
BsrFI	RCCGGY	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	204
BssMI	GATC	4 cut(s)	67, 146, 178, 215
Bst2UI	CCWGG	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	39
BstBAI	YACGTR	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	3 cut(s)	191, 219, 338
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	4 cut(s)	70, 149, 181, 218
BstMBI	GATC	4 cut(s)	67, 146, 178, 215
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 55, 262
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstUI	CGCG	1 cut(s)	78
BstX2I	RGATCY	2 cut(s)	146, 215
BstYI	RGATCY	2 cut(s)	146, 215
BsuI	GTATCC	1 cut(s)	376
BsuRI	GGCC	2 cut(s)	5, 81
Cac8I	GCNNGC	1 cut(s)	391
CaiI	CAGNNNCTG	1 cut(s)	256
Cfr10I	RCCGGY	1 cut(s)	204
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	2 cut(s)	61, 202
CspAI	ACCGGT	1 cut(s)	204
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	6 cut(s)	5, 81, 129, 256, 280, 302
CviKI_1	RGCY	6 cut(s)	5, 81, 129, 256, 280, 302
CviQI	GTAC	2 cut(s)	61, 202
DdeI	CTNAG	3 cut(s)	191, 219, 338
DpnI	GATC	4 cut(s)	69, 148, 180, 217
DpnII	GATC	4 cut(s)	67, 146, 178, 215
DraI	TTTAAA	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco72I	CACGTG	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	63
FaeI	CATG	1 cut(s)	235
FaiI	YATR	6 cut(s)	135, 212, 233, 273, 299, 308
FatI	CATG	1 cut(s)	231
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	79
GluI	GCNGC	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	5, 81
HapII	CCGG	2 cut(s)	205, 369
HgaI	GACGC	1 cut(s)	3
Hin1II	CATG	1 cut(s)	235
HpaII	CCGG	2 cut(s)	205, 369
HphI	GGTGA	1 cut(s)	271
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	182
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	191
HpyCH4IV	ACGT	2 cut(s)	123, 156
HpyCH4V	TGCA	3 cut(s)	29, 297, 393
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 55, 262
HpyF3I	CTNAG	3 cut(s)	191, 219, 338
HpySE526I	ACGT	2 cut(s)	123, 156
Hsp92II	CATG	1 cut(s)	235
KpnI	GGTACC	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	67, 146, 178, 215
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	7 cut(s)	50, 77, 180, 218, 242, 382, 403
MaeII	ACGT	2 cut(s)	123, 156
MaeIII	GTNAC	1 cut(s)	309
MalI	GATC	4 cut(s)	69, 148, 180, 217
MboI	GATC	4 cut(s)	67, 146, 178, 215
MboII	GAAGA	4 cut(s)	25, 56, 141, 236
MflI	RGATCY	2 cut(s)	146, 215
MnlI	CCTC	6 cut(s)	16, 92, 136, 214, 246, 339
MseI	TTAA	3 cut(s)	20, 285, 396
MspI	CCGG	2 cut(s)	205, 369
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	3 cut(s)	11, 55, 262
NdeII	GATC	4 cut(s)	67, 146, 178, 215
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	2 cut(s)	203, 409
NmuCI	GTSAC	1 cut(s)	309
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PinAI	ACCGGT	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	80
PmaCI	CACGTG	1 cut(s)	157
PmlI	CACGTG	1 cut(s)	157
Ppu21I	YACGTR	1 cut(s)	157
PsiI	TTATAA	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	63
PspCI	CACGTG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	203, 409
PstNI	CAGNNNCTG	1 cut(s)	256
PsuI	RGATCY	2 cut(s)	146, 215
RsaI	GTAC	2 cut(s)	62, 203
RsaNI	GTAC	2 cut(s)	61, 202
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	20, 285, 396
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	4 cut(s)	67, 146, 178, 215
ScrFI	CCNGG	1 cut(s)	65
SetI	ASST	7 cut(s)	126, 131, 159, 282, 304, 344, 379
SsiI	CCGC	2 cut(s)	78, 411
SspI	AATATT	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	63
TaiI	ACGT	2 cut(s)	126, 159
TaqI	TCGA	1 cut(s)	36
TauI	GCSGC	1 cut(s)	81
Tru1I	TTAA	3 cut(s)	20, 285, 396
Tru9I	TTAA	3 cut(s)	20, 285, 396
TseFI	GTSAC	1 cut(s)	309
Tsp45I	GTSAC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.