AT4G16440

Belongs to the NARF family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
9269094 .. 9271669
2576 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16440.1

Sequence Viewer

Length: 1425 bp
ATGTCAGAGAAGTTTTCACCGACTTTGAGGCTCGGAGATCTCAACGATTTCATTGCTCCGTCTCAAGCTTGTGTCATATCTCTTAAGGACTCAAAACCCATCGTCAAGAAGTCTGATCGACCCCAGGTTGTGATTGCCCCAAAACAGCAGCTTGAACCGGTTAAAATTTCTCTCAAGGATTGCTTGGCTTGCAGTGGATGCATCACATCAGCTGAGACAGTTATGCTTGAGAAGCAAAGCTTAGACGAGTTTCTCTCTGCTCTTAGCAAAGGCAAGGACGTGGTTGTGTCCGTTTCTCCACAGTCGAGAGCTTCCCTTGCGGTTCACTATGACATCTCTCCTCTTCAGGTTTTCAAGAAGCTTACTACGTTTTTGAAGTCTCTGGGAGTTAAAGCTGTGTTTGATACTAGCTGCAGTAGAGATTTGGTACTTATTGAATCTTGTAATGAGTTTGTGAGCCGTTATAAGCAAGCTAATTCTGATGATGGTGAAAATTCTCAATCCCCTCTCCCTGTGCTTTCCTCTGCCTGTCCTGGTTGGATTTGTTATGCTGAAAAGCAGCTTGGCTCATATGTTCTGCCGTATGTGTCTTCTGTTAAGAGTCCTCAGCAAGCTATTGGAGCTGCGATCAAACACCATCTGTGTCAAGCATTAGGACTCAGGCTGCATGAGGTGTACCATGTGACTGTGATGCCCTGTTATGATAAGAAACTCGAGGCAGCAAGAGATGATTTTGTCTTTGATGATGGAACACAAGATAATGGAGACCTTAAGCTGACAGAAGTTGATTCCGTGCTAACAACGGGTGAAATCATGGATTTAATAAAGTTGAAAGGAGTTGACTTTAAAGATTTGGAGGAATCTCCACTTGACAGAGTGCTGACGAATGTTACTGAGGAAGGAGATCTTTATGGTGTAGCTGGGAGTTCTGGTGGTTATGCAGAAACAATATTCAGACATGCGGCAAAAGCACTATTTGGACAAACTATTGAAGGTCCTCTGGAGTTTAAAACTCTCAGAAATTCTGATTTCCGTGAAGTGACTCTTCAATTGGAAGGTAAAACAGTGTTAAAATTTGCGCTGTGTTACGGTTTCCAGAACCTCCAGAATATTGTTCGGAGAGTGAAAACGCGCAAATGCGATTATCAGTATGTAGAGATTATGGCGTGCCCTGCAGGTTGCCTAAATGGTGGTGGGCAGATCAAGCCAAAGACAGGACAGTCCCAGAAAGAACTGATCCACTCACTGGAAGCTACTTATATGAATGATACTACTTTGAATACAGATCCATACCAGAATCCAACGGCGAAGAGATTATTCGAGGAGTGGCTTAAAGAGCCTGGTTCCAACGAGGCGAAGAAGTACTTGCATACTCAGTACCATCCGGTCGTGAAAAGTGTTACGTCGCAGCTCAACAACTGGTAG

Protein Analysis

474

Amino Acids

52.5

Weight (kDa)

6.19

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fe_hyd_lg_C PF02906 92 - 398 2.5e-82 Iron only hydrogenase large subunit, C-terminal domain
Fe_hyd_SSU PF02256 429 - 462 4e-09 Iron hydrogenase small subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013504)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
AasI GACNNNNNNGTC 1 cut(s) 1219
Acc36I ACCTGC 1 cut(s) 1166
AccB7I CCANNNNNTGG 1 cut(s) 1246
AccII CGCG 1 cut(s) 1132
AciI CCGC 2 cut(s) 320, 962
AclWI GGATC 2 cut(s) 1231, 1280
AcsI RAATTY 4 cut(s) 165, 493, 1021, 1073
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 4 cut(s) 429, 677, 1364, 1379
AfiI CCNNNNNNNGG 2 cut(s) 1214, 1246
AflII CTTAAG 2 cut(s) 83, 770
AgeI ACCGGT 1 cut(s) 157
AgsI TTSAA 8 cut(s) 155, 355, 376, 437, 832, 992, 1049, 1279
AjiI CACGTC 1 cut(s) 280
AjnI CCWGG 3 cut(s) 123, 532, 1339
AjuI GAANNNNNNNTTGG 2 cut(s) 546, 578
Alw26I GTCTC 4 cut(s) 66, 209, 384, 759
AlwI GGATC 2 cut(s) 1231, 1280
Ama87I CYCGRG 1 cut(s) 713
ApeKI GCWGC 7 cut(s) 148, 411, 559, 623, 664, 719, 1408
ApoI RAATTY 4 cut(s) 165, 493, 1021, 1073
AsiGI ACCGGT 1 cut(s) 157
AspLEI GCGC 2 cut(s) 1081, 1134
AspS9I GGNCC 1 cut(s) 995
AsuHPI GGTGA 3 cut(s) 9, 500, 818
AvaI CYCGRG 1 cut(s) 713
AvaII GGWCC 1 cut(s) 995
BaeGI GKGCMC 1 cut(s) 1172
BbsI GAAGAC 1 cut(s) 582
BbvCI CCTCAGC 1 cut(s) 606
BbvI GCAGC 7 cut(s) 160, 398, 571, 610, 651, 731, 1420
BccI CCATC 5 cut(s) 107, 479, 645, 740, 1389
BceAI ACGGC 3 cut(s) 444, 565, 1320
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 3 cut(s) 125, 534, 1341
BcoDI GTCTC 4 cut(s) 66, 209, 384, 759
BfaI CTAG 1 cut(s) 408
BfmI CTRYAG 2 cut(s) 412, 1173
BfrI CTTAAG 2 cut(s) 83, 770
BfuAI ACCTGC 1 cut(s) 1166
BglII AGATCT 2 cut(s) 37, 904
BisI GCNGC 8 cut(s) 149, 412, 560, 624, 665, 720, 963, 1409
BlsI GCNGC 8 cut(s) 150, 413, 561, 625, 666, 721, 964, 1410
BmcAI AGTACT 1 cut(s) 1364
Bme1390I CCNGG 3 cut(s) 125, 534, 1341
Bme18I GGWCC 1 cut(s) 995
BmeT110I CYCGRG 1 cut(s) 713
BmgBI CACGTC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 995
BmiI GGNNCC 1 cut(s) 1345
BmrFI CCNGG 3 cut(s) 125, 534, 1341
BmsI GCATC 3 cut(s) 188, 210, 681
BpiI GAAGAC 1 cut(s) 582
BplI GAGNNNNNCTC 2 cut(s) 239, 271
BpmI CTGGAG 2 cut(s) 1022, 1088
Bpu10I CCTNAGC 1 cut(s) 606
BpuEI CTTGAG 3 cut(s) 48, 158, 248
BsaI GGTCTC 1 cut(s) 759
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 2 cut(s) 157, 1384
BsaXI ACNNNNNCTCC 2 cut(s) 916, 946
Bsc4I CCNNNNNNNGG 2 cut(s) 1214, 1246
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 2 cut(s) 1251, 1424
Bse3DI GCAATG 1 cut(s) 51
BseBI CCWGG 3 cut(s) 125, 534, 1341
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 203, 1381
BseLI CCNNNNNNNGG 2 cut(s) 1214, 1246
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 6 cut(s) 204, 620, 673, 885, 1030, 1388
BseNI ACTGG 2 cut(s) 1251, 1424
BseRI GAGGAG 2 cut(s) 330, 1337
BseSI GKGCMC 1 cut(s) 1172
BseXI GCAGC 7 cut(s) 160, 398, 571, 610, 651, 731, 1420
BseYI CCCAGC 1 cut(s) 920
Bsh1236I CGCG 1 cut(s) 1132
Bsh1285I CGRYCG 1 cut(s) 1389
BshTI ACCGGT 1 cut(s) 157
BsiEI CGRYCG 1 cut(s) 1389
BsiHKCI CYCGRG 1 cut(s) 713
BsiSI CCGG 2 cut(s) 158, 1385
BslFI GGGAC 1 cut(s) 1207
BslI CCNNNNNNNGG 2 cut(s) 1214, 1246
BsmAI GTCTC 4 cut(s) 66, 209, 384, 759
BsmBI CGTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 1207
Bso31I GGTCTC 1 cut(s) 759
BsoBI CYCGRG 1 cut(s) 713
Bsp1286I GDGCHC 1 cut(s) 1172
Bsp143I GATC 7 cut(s) 37, 115, 627, 904, 1200, 1236, 1285
BspACI CCGC 2 cut(s) 320, 962
BspCNI CTCAG 6 cut(s) 205, 619, 672, 886, 1029, 1387
BspFNI CGCG 1 cut(s) 1132
BspLI GGNNCC 1 cut(s) 1345
BspMAI CTGCAG 2 cut(s) 416, 1177
BspMI ACCTGC 1 cut(s) 1166
BspPI GGATC 2 cut(s) 1231, 1280
BspTI CTTAAG 2 cut(s) 83, 770
BspTNI GGTCTC 1 cut(s) 759
BsrDI GCAATG 1 cut(s) 51
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 2 cut(s) 1251, 1424
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 7 cut(s) 37, 115, 627, 904, 1200, 1236, 1285
Bst2UI CCWGG 3 cut(s) 125, 534, 1341
Bst4CI ACNGT 6 cut(s) 220, 303, 688, 1066, 1091, 1221
Bst6I CTCTTC 3 cut(s) 348, 1050, 1304
BstAFI CTTAAG 2 cut(s) 83, 770
BstAPI GCANNNNNTGC 1 cut(s) 198
BstC8I GCNNGC 4 cut(s) 190, 471, 612, 1168
BstDEI CTNAG 8 cut(s) 213, 241, 263, 606, 659, 894, 1016, 1374
BstF5I GGATG 2 cut(s) 203, 1381
BstFNI CGCG 1 cut(s) 1132
BstHHI GCGC 2 cut(s) 1081, 1134
BstKTI GATC 7 cut(s) 40, 118, 630, 907, 1203, 1239, 1288
BstMAI GTCTC 4 cut(s) 66, 209, 384, 759
BstMBI GATC 7 cut(s) 37, 115, 627, 904, 1200, 1236, 1285
BstMCI CGRYCG 1 cut(s) 1389
BstMWI GCNNNNNNNGC 9 cut(s) 189, 198, 232, 317, 620, 968, 1172, 1204, 1336
BstNI CCWGG 3 cut(s) 125, 534, 1341
BstNSI RCATGY 1 cut(s) 962
BstSCI CCNGG 3 cut(s) 123, 532, 1339
BstSFI CTRYAG 2 cut(s) 412, 1173
BstSLI GKGCMC 1 cut(s) 1172
BstUI CGCG 1 cut(s) 1132
BstV1I GCAGC 7 cut(s) 160, 398, 571, 610, 651, 731, 1420
BstV2I GAAGAC 1 cut(s) 582
BstX2I RGATCY 3 cut(s) 37, 904, 1285
BstYI RGATCY 3 cut(s) 37, 904, 1285
BtrI CACGTC 1 cut(s) 280
BtsCI GGATG 2 cut(s) 203, 1381
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 3 cut(s) 199, 1071, 1244
BveI ACCTGC 1 cut(s) 1166
Cac8I GCNNGC 4 cut(s) 190, 471, 612, 1168
CfoI GCGC 2 cut(s) 1081, 1134
Cfr10I RCCGGY 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 995
Csp6I GTAC 4 cut(s) 428, 676, 1363, 1378
CspAI ACCGGT 1 cut(s) 157
CviAII CATG 4 cut(s) 668, 680, 814, 959
CviQI GTAC 4 cut(s) 428, 676, 1363, 1378
DdeI CTNAG 8 cut(s) 213, 241, 263, 606, 659, 894, 1016, 1374
DpnI GATC 7 cut(s) 39, 117, 629, 906, 1202, 1238, 1287
DpnII GATC 7 cut(s) 37, 115, 627, 904, 1200, 1236, 1285
DraI TTTAAA 2 cut(s) 847, 1009
DrdI GACNNNNNNGTC 1 cut(s) 1219
DseDI GACNNNNNNGTC 1 cut(s) 1219
Eam1104I CTCTTC 3 cut(s) 348, 1050, 1304
EarI CTCTTC 3 cut(s) 348, 1050, 1304
Eco31I GGTCTC 1 cut(s) 759
Eco47I GGWCC 1 cut(s) 995
Eco57I CTGAAG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 713
EcoO109I RGGNCCY 1 cut(s) 995
EcoRII CCWGG 3 cut(s) 123, 532, 1339
EcoT22I ATGCAT 1 cut(s) 203
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 4 cut(s) 671, 683, 817, 962
FaqI GGGAC 1 cut(s) 1207
FatI CATG 4 cut(s) 667, 679, 813, 958
FauNDI CATATG 1 cut(s) 571
Fnu4HI GCNGC 8 cut(s) 149, 412, 560, 624, 665, 720, 963, 1409
FokI GGATG 2 cut(s) 210, 1368
Fsp4HI GCNGC 8 cut(s) 149, 412, 560, 624, 665, 720, 963, 1409
FspBI CTAG 1 cut(s) 408
GlaI GCGC 2 cut(s) 1080, 1133
GluI GCNGC 8 cut(s) 149, 412, 560, 624, 665, 720, 963, 1409
GsaI CCCAGC 1 cut(s) 924
GsuI CTGGAG 2 cut(s) 1022, 1088
HapII CCGG 2 cut(s) 158, 1385
HhaI GCGC 2 cut(s) 1081, 1134
Hin1II CATG 4 cut(s) 671, 683, 817, 962
Hin6I GCGC 2 cut(s) 1079, 1132
HinP1I GCGC 2 cut(s) 1079, 1132
HincII GTYRAC 1 cut(s) 841
HindII GTYRAC 1 cut(s) 841
HindIII AAGCTT 3 cut(s) 66, 238, 359
HinfI GANTC 8 cut(s) 89, 437, 601, 657, 788, 860, 1042, 1297
HpaII CCGG 2 cut(s) 158, 1385
HphI GGTGA 3 cut(s) 9, 500, 818
Hpy166II GTNNAC 3 cut(s) 325, 676, 841
Hpy188I TCNGA 8 cut(s) 7, 35, 115, 481, 956, 1019, 1027, 1119
Hpy188III TCNNGA 7 cut(s) 106, 306, 355, 1001, 1096, 1105, 1390
Hpy8I GTNNAC 3 cut(s) 325, 676, 841
Hpy99I CGWCG 1 cut(s) 1408
HpyAV CCTTC 3 cut(s) 893, 986, 1049
HpyCH4III ACNGT 6 cut(s) 220, 303, 688, 1066, 1091, 1221
HpyCH4IV ACGT 3 cut(s) 279, 368, 1403
HpyCH4V TGCA 7 cut(s) 192, 201, 414, 667, 941, 1175, 1369
HpyF10VI GCNNNNNNNGC 9 cut(s) 189, 198, 232, 317, 620, 968, 1172, 1204, 1336
HpyF3I CTNAG 8 cut(s) 213, 241, 263, 606, 659, 894, 1016, 1374
HpySE526I ACGT 3 cut(s) 279, 368, 1403
Hsp92II CATG 4 cut(s) 671, 683, 817, 962
HspAI GCGC 2 cut(s) 1079, 1132
Kzo9I GATC 7 cut(s) 37, 115, 627, 904, 1200, 1236, 1285
LmnI GCTCC 2 cut(s) 61, 620
Lsp1109I GCAGC 7 cut(s) 160, 398, 571, 610, 651, 731, 1420
LweI GCATC 3 cut(s) 188, 210, 681
MaeI CTAG 1 cut(s) 408
MaeII ACGT 3 cut(s) 279, 368, 1403
MaeIII GTNAC 5 cut(s) 682, 889, 1039, 1085, 1399
MalI GATC 7 cut(s) 39, 117, 629, 906, 1202, 1238, 1287
MboI GATC 7 cut(s) 37, 115, 627, 904, 1200, 1236, 1285
MboII GAAGA 5 cut(s) 335, 582, 1037, 1321, 1369
MfeI CAATTG 1 cut(s) 1049
MflI RGATCY 3 cut(s) 37, 904, 1285
MhlI GDGCHC 1 cut(s) 1172
MluCI AATT 6 cut(s) 165, 475, 493, 1021, 1049, 1073
MlyI GAGTC 4 cut(s) 83, 610, 651, 1036
MmeI TCCRAC 3 cut(s) 518, 1325, 1371
Mph1103I ATGCAT 1 cut(s) 203
MspA1I CMGCKG 1 cut(s) 212
MspCI CTTAAG 2 cut(s) 83, 770
MspI CCGG 2 cut(s) 158, 1385
MspR9I CCNGG 3 cut(s) 125, 534, 1341
MunI CAATTG 1 cut(s) 1049
MvaI CCWGG 3 cut(s) 125, 534, 1341
MvnI CGCG 1 cut(s) 1132
MwoI GCNNNNNNNGC 9 cut(s) 189, 198, 232, 317, 620, 968, 1172, 1204, 1336
NdeI CATATG 1 cut(s) 571
NdeII GATC 7 cut(s) 37, 115, 627, 904, 1200, 1236, 1285
NlaIII CATG 4 cut(s) 671, 683, 817, 962
NlaIV GGNNCC 1 cut(s) 1345
NmuCI GTSAC 2 cut(s) 682, 1039
NsiI ATGCAT 1 cut(s) 203
NspI RCATGY 1 cut(s) 962
PaeR7I CTCGAG 1 cut(s) 713
PfeI GAWTC 4 cut(s) 437, 788, 860, 1297
PflMI CCANNNNNTGG 1 cut(s) 1246
PinAI ACCGGT 1 cut(s) 157
PkrI GCNGC 8 cut(s) 150, 413, 561, 625, 666, 721, 964, 1410
PleI GAGTC 4 cut(s) 83, 609, 651, 1036
PpsI GAGTC 4 cut(s) 83, 609, 651, 1036
PpuMI RGGWCCY 1 cut(s) 995
PsiI TTATAA 1 cut(s) 465
Psp5II RGGWCCY 1 cut(s) 995
Psp6I CCWGG 3 cut(s) 123, 532, 1339
PspFI CCCAGC 1 cut(s) 920
PspGI CCWGG 3 cut(s) 123, 532, 1339
PspN4I GGNNCC 1 cut(s) 1345
PspPI GGNCC 1 cut(s) 995
PspPPI RGGWCCY 1 cut(s) 995
PspXI VCTCGAGB 1 cut(s) 713
PstI CTGCAG 2 cut(s) 416, 1177
PsuI RGATCY 3 cut(s) 37, 904, 1285
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 4 cut(s) 429, 677, 1364, 1379
RsaNI GTAC 4 cut(s) 428, 676, 1363, 1378
SatI GCNGC 8 cut(s) 149, 412, 560, 624, 665, 720, 963, 1409
Sau3AI GATC 7 cut(s) 37, 115, 627, 904, 1200, 1236, 1285
Sau96I GGNCC 1 cut(s) 995
SbfI CCTGCAGG 1 cut(s) 1177
ScaI AGTACT 1 cut(s) 1364
SchI GAGTC 4 cut(s) 83, 610, 651, 1036
ScrFI CCNGG 3 cut(s) 125, 534, 1341
SdaI CCTGCAGG 1 cut(s) 1177
SduI GDGCHC 1 cut(s) 1172
SfaNI GCATC 3 cut(s) 188, 210, 681
SfcI CTRYAG 2 cut(s) 412, 1173
Sfr274I CTCGAG 1 cut(s) 713
SinI GGWCC 1 cut(s) 995
SlaI CTCGAG 1 cut(s) 713
SmlI CTYRAG 6 cut(s) 63, 83, 173, 227, 713, 770
SmoI CTYRAG 6 cut(s) 63, 83, 173, 227, 713, 770
Sse8387I CCTGCAGG 1 cut(s) 1177
Sse9I AATT 6 cut(s) 165, 475, 493, 1021, 1049, 1073
SsiI CCGC 2 cut(s) 320, 962
SspI AATATT 2 cut(s) 951, 1111
SspMI CTAG 1 cut(s) 408
StyD4I CCNGG 3 cut(s) 123, 532, 1339
TaaI ACNGT 6 cut(s) 220, 303, 688, 1066, 1091, 1221
TaiI ACGT 3 cut(s) 282, 371, 1406
TaqI TCGA 4 cut(s) 118, 305, 714, 1320
TasI AATT 6 cut(s) 165, 475, 493, 1021, 1049, 1073
TatI WGTACW 1 cut(s) 1362
TauI GCSGC 1 cut(s) 965
TfiI GAWTC 4 cut(s) 437, 788, 860, 1297
TscAI CASTG 3 cut(s) 199, 1071, 1251
TseFI GTSAC 2 cut(s) 682, 1039
TseI GCWGC 7 cut(s) 148, 411, 559, 623, 664, 719, 1408
Tsp45I GTSAC 2 cut(s) 682, 1039
TspDTI ATGAA 2 cut(s) 40, 1277
TspGWI ACGGA 4 cut(s) 48, 280, 781, 1022
TspRI CASTG 3 cut(s) 199, 1071, 1251
Van91I CCANNNNNTGG 1 cut(s) 1246
Vha464I CTTAAG 2 cut(s) 83, 770
VpaK11BI GGWCC 1 cut(s) 995
XapI RAATTY 4 cut(s) 165, 493, 1021, 1073
XceI RCATGY 1 cut(s) 962
XhoI CTCGAG 1 cut(s) 713
XspI CTAG 1 cut(s) 408
ZrmI AGTACT 1 cut(s) 1364
Zsp2I ATGCAT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.