Rmu_sc0000255.1_g000009

Belongs to the NARF family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000255.1
Physical Location & Seq
Forward (+)
26811 .. 35280
8470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000255.1_g000009.1.cds

Sequence Viewer

Length: 1572 bp
atgagctacttgggtgtgggtgttagtcctgggaatgtcccagtgtctcacagcagcagcagcagcaccacaaatctaaaagtgatcgatcggagagtgagggtggcagagttggtcttgaggtttctcatctgtggtctcggactcgctgctgctcttcttgtggccactgatactcaggtcaaagagatcttcatgatcaagaagaaggccaagttcacggacatgaaggcccttgtgtttttggtgatagccaatggaatagctgctgcttactctttgctgcaagcactgcgcccacgcttccgctgcgccactctgattgttgaatgctatgtcgttgatgggtgcataacatcggccgagacggttatgctggagaagcaaagtttggatgagtttcttttgaacattgataaaggaaaagctgtcattgtctccctatctccccaatcaagagcttcacttgcagttcattttgggatttcgcaacttcaggtctttaggaaattgacaactctttttaagtcccttggcgtaaaggctatatttgacacaagttgcagtagagatctaagtcttattgaatcttgtaatgaattcatcacaaggtacaaccagtcaactgatgatgaaagccgtaaatctttgttgcccatgatttcatcagcatgtccaggctggatatgttatgctgaaaaaacacttggatcctatgtactgccttatatttcttcagtgaagagtccccagcaaacaattggagttattgttaaaaagcatatatgccaaaaaatgggtcttgggccagatgatgtttaccatgtaacagtgatgccttgttatgataagaagcttgaggcgtcacgcgatgacttcgtatttgaagttgatggagccaagagtaatgaggatggaagtcttagcgtttcagaggtagattcagtgttgacaactggggaagtcttagatctgatacagttaaaaggagttgattttgagggcttagaagagtctccactagatagcatgttgacaaactttagtgatggacatctttatggagtccgcggaagctcagggggttatgcagaaacaattttccgatatgctgctaaagtaatctttggaagagaaattgaaggccctgtggacttcagaactattaaaaattcagacttccaggaagtgactttagaggtggaaggaaagactgtattgaaatttgcactatgttatggatttcggaacctgcaaaacgttgtcaggaaaatcaagattgggaaatgtgattatcattttctagagatcatggcatgcccttctggctgcttgaatggtggaggacagataaagccaaaacctgggcaatctgcaaagcagttgattccattattacaagcagcttatgcggaaaatgttttggtatctgatccttttgcaaatccaatagtgcaaagcttatacaatgagtggctcgagaaacctggttcagagaaggccaggcagctcatgcacacagagtaccaccctatcgtgaaaagcataacttctcagttacacaattggtga

Protein Analysis

523

Amino Acids

57.58

Weight (kDa)

7.07

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013504)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1260
AccB7I CCANNNNNTGG 2 cut(s) 796, 1364
AccII CGCG 2 cut(s) 870, 1071
AciI CCGC 4 cut(s) 307, 1069, 1071, 1412
AclI AACGTT 1 cut(s) 1260
AclWI GGATC 3 cut(s) 705, 718, 1427
AcoI YGGCCR 2 cut(s) 165, 360
AcsI RAATTY 3 cut(s) 599, 1171, 1223
AcuI CTGAAG 3 cut(s) 479, 720, 1141
AcyI GRCGYC 1 cut(s) 863
AfaI GTAC 3 cut(s) 614, 720, 1526
AfiI CCNNNNNNNGG 2 cut(s) 796, 1364
AgsI TTSAA 7 cut(s) 329, 409, 587, 887, 1142, 1222, 1336
AjnI CCWGG 6 cut(s) 28, 676, 1182, 1363, 1486, 1502
AjuI GAANNNNNNNTTGG 4 cut(s) 374, 406, 690, 722
AluBI AGCT 9 cut(s) 6, 266, 428, 461, 856, 1077, 1406, 1461, 1510
AluI AGCT 9 cut(s) 6, 266, 428, 461, 856, 1077, 1406, 1461, 1510
Alw26I GTCTC 5 cut(s) 51, 143, 359, 442, 1020
AlwI GGATC 3 cut(s) 705, 718, 1427
Ama87I CYCGRG 1 cut(s) 1478
AoxI GGCC 7 cut(s) 165, 210, 231, 360, 806, 1144, 1500
ApoI RAATTY 3 cut(s) 599, 1171, 1223
ArsI GACNNNNNNTTYG 4 cut(s) 784, 816, 866, 898
AspLEI GCGC 2 cut(s) 297, 314
AspS9I GGNCC 3 cut(s) 232, 806, 1145
AsuHPI GGTGA 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 1478
BaeI ACNNNNGTAYC 2 cut(s) 165, 198
BalI TGGCCA 1 cut(s) 167
BamHI GGATCC 1 cut(s) 710
BccI CCATC 4 cut(s) 338, 887, 908, 1043
BceAI ACGGC 1 cut(s) 624
BciT130I CCWGG 6 cut(s) 30, 678, 1184, 1365, 1488, 1504
BclI TGATCA 1 cut(s) 198
BcoDI GTCTC 5 cut(s) 51, 143, 359, 442, 1020
BfaI CTAG 2 cut(s) 1022, 1304
BfuAI ACCTGC 1 cut(s) 1260
BglI GCCNNNNNGGC 1 cut(s) 1326
BglII AGATCT 3 cut(s) 189, 571, 970
Bme1390I CCNGG 6 cut(s) 30, 678, 1184, 1365, 1488, 1504
BmeT110I CYCGRG 1 cut(s) 1478
BmgT120I GGNCC 3 cut(s) 232, 806, 1145
BmiI GGNNCC 3 cut(s) 712, 898, 1250
BmrFI CCNGG 6 cut(s) 30, 678, 1184, 1365, 1488, 1504
BmrI ACTGGG 2 cut(s) 35, 966
BmsI GCATC 1 cut(s) 825
BmuI ACTGGG 2 cut(s) 35, 966
BpmI CTGGAG 1 cut(s) 398
Bpu10I CCTNAGC 1 cut(s) 1078
BpuEI CTTGAG 2 cut(s) 139, 878
Bsa29I ATCGAT 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 1053
BsaHI GRCGYC 1 cut(s) 863
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 4 cut(s) 29, 532, 1069, 1364
BsaXI ACNNNNNCTCC 2 cut(s) 756, 786
Bsc4I CCNNNNNNNGG 2 cut(s) 796, 1364
Bse1I ACTGG 3 cut(s) 41, 619, 961
Bse8I GATNNNNATC 1 cut(s) 1053
BseBI CCWGG 6 cut(s) 30, 678, 1184, 1365, 1488, 1504
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 4 cut(s) 29, 532, 1069, 1364
BseGI GGATG 2 cut(s) 400, 919
BseJI GATNNNNATC 1 cut(s) 1053
BseLI CCNNNNNNNGG 2 cut(s) 796, 1364
BseMII CTCAG 3 cut(s) 191, 1092, 1568
BseNI ACTGG 3 cut(s) 41, 619, 961
BseX3I CGGCCG 1 cut(s) 360
BseYI CCCAGC 1 cut(s) 750
Bsh1236I CGCG 2 cut(s) 870, 1071
Bsh1285I CGRYCG 2 cut(s) 91, 363
BshFI GGCC 7 cut(s) 167, 212, 233, 362, 808, 1146, 1502
BshVI ATCGAT 1 cut(s) 87
BsiEI CGRYCG 2 cut(s) 91, 363
BsiHKCI CYCGRG 1 cut(s) 1478
BslFI GGGAC 3 cut(s) 23, 514, 732
BslI CCNNNNNNNGG 2 cut(s) 796, 1364
BsmAI GTCTC 5 cut(s) 51, 143, 359, 442, 1020
BsmBI CGTCTC 1 cut(s) 359
BsmFI GGGAC 3 cut(s) 23, 514, 732
BsmI GAATGC 1 cut(s) 335
BsnI GGCC 7 cut(s) 167, 212, 233, 362, 808, 1146, 1502
Bso31I GGTCTC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 1478
Bsp143I GATC 9 cut(s) 84, 88, 189, 198, 571, 710, 970, 1308, 1432
BspACI CCGC 4 cut(s) 307, 1069, 1071, 1412
BspANI GGCC 7 cut(s) 167, 212, 233, 362, 808, 1146, 1502
BspCNI CTCAG 3 cut(s) 190, 1091, 1567
BspDI ATCGAT 1 cut(s) 87
BspFNI CGCG 2 cut(s) 870, 1071
BspHI TCATGA 1 cut(s) 195
BspLI GGNNCC 3 cut(s) 712, 898, 1250
BspMI ACCTGC 1 cut(s) 1260
BspPI GGATC 3 cut(s) 705, 718, 1427
BspQI GCTCTTC 1 cut(s) 162
BspTNI GGTCTC 1 cut(s) 143
BsrI ACTGG 3 cut(s) 41, 619, 961
BssECI CCNNGG 4 cut(s) 29, 532, 1069, 1364
BssMI GATC 9 cut(s) 84, 88, 189, 198, 571, 710, 970, 1308, 1432
BssNI GRCGYC 1 cut(s) 863
BssT1I CCWWGG 1 cut(s) 532
Bst2UI CCWGG 6 cut(s) 30, 678, 1184, 1365, 1488, 1504
Bst4CI ACNGT 4 cut(s) 370, 832, 981, 1216
Bst6I CTCTTC 4 cut(s) 162, 737, 1005, 1126
BstACI GRCGYC 1 cut(s) 863
BstAPI GCANNNNNTGC 3 cut(s) 292, 1409, 1513
BstC8I GCNNGC 2 cut(s) 288, 1318
BstDEI CTNAG 7 cut(s) 177, 575, 923, 967, 1006, 1078, 1554
BstDSI CCRYGG 1 cut(s) 1069
BstF5I GGATG 2 cut(s) 400, 919
BstFNI CGCG 2 cut(s) 870, 1071
BstHHI GCGC 2 cut(s) 297, 314
BstKTI GATC 9 cut(s) 87, 91, 192, 201, 574, 713, 973, 1311, 1435
BstMAI GTCTC 5 cut(s) 51, 143, 359, 442, 1020
BstMBI GATC 9 cut(s) 84, 88, 189, 198, 571, 710, 970, 1308, 1432
BstMCI CGRYCG 2 cut(s) 91, 363
BstMWI GCNNNNNNNGC 9 cut(s) 60, 63, 292, 309, 382, 467, 1326, 1409, 1513
BstNI CCWGG 6 cut(s) 30, 678, 1184, 1365, 1488, 1504
BstNSI RCATGY 3 cut(s) 675, 1033, 1320
BstSCI CCNGG 6 cut(s) 28, 676, 1182, 1363, 1486, 1502
BstUI CGCG 2 cut(s) 870, 1071
BstX2I RGATCY 4 cut(s) 189, 571, 710, 970
BstYI RGATCY 4 cut(s) 189, 571, 710, 970
BstZI CGGCCG 1 cut(s) 360
Bsu15I ATCGAT 1 cut(s) 87
BsuRI GGCC 7 cut(s) 167, 212, 233, 362, 808, 1146, 1502
BsuTUI ATCGAT 1 cut(s) 87
BtgI CCRYGG 1 cut(s) 1069
BtgZI GCGATG 1 cut(s) 885
BtsCI GGATG 2 cut(s) 400, 919
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 6 cut(s) 48, 168, 290, 744, 837, 951
BveI ACCTGC 1 cut(s) 1260
Cac8I GCNNGC 2 cut(s) 288, 1318
CciI TCATGA 1 cut(s) 195
CfoI GCGC 2 cut(s) 297, 314
Cfr13I GGNCC 3 cut(s) 232, 806, 1145
Cfr42I CCGCGG 1 cut(s) 1072
ClaI ATCGAT 1 cut(s) 87
CseI GACGC 1 cut(s) 852
CsiI ACCWGGT 1 cut(s) 1486
Csp6I GTAC 3 cut(s) 613, 719, 1525
CspCI CAANNNNNGTGG 2 cut(s) 304, 339
CviAII CATG 9 cut(s) 196, 226, 658, 672, 824, 1030, 1312, 1317, 1513
CviQI GTAC 3 cut(s) 613, 719, 1525
DdeI CTNAG 7 cut(s) 177, 575, 923, 967, 1006, 1078, 1554
DpnI GATC 9 cut(s) 86, 90, 191, 200, 573, 712, 972, 1310, 1434
DpnII GATC 9 cut(s) 84, 88, 189, 198, 571, 710, 970, 1308, 1432
EaeI YGGCCR 2 cut(s) 165, 360
EagI CGGCCG 1 cut(s) 360
Eam1104I CTCTTC 4 cut(s) 162, 737, 1005, 1126
EarI CTCTTC 4 cut(s) 162, 737, 1005, 1126
EclXI CGGCCG 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 532
Eco31I GGTCTC 1 cut(s) 143
Eco52I CGGCCG 1 cut(s) 360
Eco57I CTGAAG 3 cut(s) 479, 720, 1141
Eco88I CYCGRG 1 cut(s) 1478
EcoO109I RGGNCCY 2 cut(s) 232, 1145
EcoRI GAATTC 1 cut(s) 599
EcoRII CCWGG 6 cut(s) 28, 676, 1182, 1363, 1486, 1502
EcoT14I CCWWGG 1 cut(s) 532
ErhI CCWWGG 1 cut(s) 532
Esp3I CGTCTC 1 cut(s) 359
FaeI CATG 9 cut(s) 199, 229, 661, 675, 827, 1033, 1315, 1320, 1516
FalI AAGNNNNNCTT 2 cut(s) 1534, 1566
FaqI GGGAC 3 cut(s) 23, 514, 732
FatI CATG 9 cut(s) 195, 225, 657, 671, 823, 1029, 1311, 1316, 1512
FbaI TGATCA 1 cut(s) 198
FokI GGATG 2 cut(s) 407, 926
FspBI CTAG 2 cut(s) 1022, 1304
GlaI GCGC 2 cut(s) 296, 313
GsaI CCCAGC 1 cut(s) 754
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 7 cut(s) 167, 212, 233, 362, 808, 1146, 1502
HgaI GACGC 1 cut(s) 852
HhaI GCGC 2 cut(s) 297, 314
Hin1I GRCGYC 1 cut(s) 863
Hin1II CATG 9 cut(s) 199, 229, 661, 675, 827, 1033, 1315, 1320, 1516
Hin6I GCGC 2 cut(s) 295, 312
HinP1I GCGC 2 cut(s) 295, 312
HincII GTYRAC 3 cut(s) 624, 951, 1035
HindII GTYRAC 3 cut(s) 624, 951, 1035
HindIII AAGCTT 2 cut(s) 854, 1459
HinfI GANTC 7 cut(s) 144, 587, 745, 941, 1013, 1065, 1387
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 6 cut(s) 219, 624, 820, 951, 1035, 1153
Hpy188III TCNNGA 9 cut(s) 118, 196, 202, 456, 1267, 1276, 1304, 1480, 1537
Hpy8I GTNNAC 6 cut(s) 219, 624, 820, 951, 1035, 1153
HpyAV CCTTC 6 cut(s) 202, 223, 1136, 1199, 1332, 1492
HpyCH4III ACNGT 4 cut(s) 370, 832, 981, 1216
HpyCH4IV ACGT 1 cut(s) 1260
HpyF10VI GCNNNNNNNGC 9 cut(s) 60, 63, 292, 309, 382, 467, 1326, 1409, 1513
HpyF3I CTNAG 7 cut(s) 177, 575, 923, 967, 1006, 1078, 1554
HpySE526I ACGT 1 cut(s) 1260
Hsp92I GRCGYC 1 cut(s) 863
Hsp92II CATG 9 cut(s) 199, 229, 661, 675, 827, 1033, 1315, 1320, 1516
HspAI GCGC 2 cut(s) 295, 312
Ksp22I TGATCA 1 cut(s) 198
KspI CCGCGG 1 cut(s) 1072
Kzo9I GATC 9 cut(s) 84, 88, 189, 198, 571, 710, 970, 1308, 1432
LguI GCTCTTC 1 cut(s) 162
LmnI GCTCC 1 cut(s) 896
LweI GCATC 1 cut(s) 825
MabI ACCWGGT 1 cut(s) 1486
MaeI CTAG 2 cut(s) 1022, 1304
MaeII ACGT 1 cut(s) 1260
MaeIII GTNAC 4 cut(s) 826, 864, 1189, 1557
MalI GATC 9 cut(s) 86, 90, 191, 200, 573, 712, 972, 1310, 1434
MboI GATC 9 cut(s) 84, 88, 189, 198, 571, 710, 970, 1308, 1432
MboII GAAGA 7 cut(s) 149, 184, 217, 726, 754, 1022, 1143
MfeI CAATTG 2 cut(s) 759, 1564
MflI RGATCY 4 cut(s) 189, 571, 710, 970
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 8 cut(s) 509, 599, 759, 1098, 1137, 1171, 1223, 1564
MluNI TGGCCA 1 cut(s) 167
MlyI GAGTC 4 cut(s) 138, 754, 1022, 1074
MnlI CCTC 8 cut(s) 93, 114, 853, 904, 928, 994, 1192, 1337
Mox20I TGGCCA 1 cut(s) 167
MscI TGGCCA 1 cut(s) 167
MseI TTAA 4 cut(s) 525, 774, 983, 1167
MslI CAYNNNNRTG 3 cut(s) 224, 670, 1059
Msp20I TGGCCA 1 cut(s) 167
MspA1I CMGCKG 2 cut(s) 309, 1071
MspR9I CCNGG 6 cut(s) 30, 678, 1184, 1365, 1488, 1504
MunI CAATTG 2 cut(s) 759, 1564
Mva1269I GAATGC 1 cut(s) 335
MvaI CCWGG 6 cut(s) 30, 678, 1184, 1365, 1488, 1504
MvnI CGCG 2 cut(s) 870, 1071
MwoI GCNNNNNNNGC 9 cut(s) 60, 63, 292, 309, 382, 467, 1326, 1409, 1513
NdeII GATC 9 cut(s) 84, 88, 189, 198, 571, 710, 970, 1308, 1432
NlaIII CATG 9 cut(s) 199, 229, 661, 675, 827, 1033, 1315, 1320, 1516
NlaIV GGNNCC 3 cut(s) 712, 898, 1250
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 2 cut(s) 864, 1189
NspI RCATGY 3 cut(s) 675, 1033, 1320
PaeI GCATGC 1 cut(s) 1320
PaeR7I CTCGAG 1 cut(s) 1478
PagI TCATGA 1 cut(s) 195
PciSI GCTCTTC 1 cut(s) 162
PctI GAATGC 1 cut(s) 335
PfeI GAWTC 3 cut(s) 587, 941, 1387
PflMI CCANNNNNTGG 2 cut(s) 796, 1364
PfoI TCCNGGA 1 cut(s) 1182
Ple19I CGATCG 1 cut(s) 91
PleI GAGTC 4 cut(s) 138, 753, 1021, 1073
PpsI GAGTC 4 cut(s) 138, 753, 1021, 1073
Psp1406I AACGTT 1 cut(s) 1260
Psp6I CCWGG 6 cut(s) 28, 676, 1182, 1363, 1486, 1502
PspFI CCCAGC 1 cut(s) 750
PspGI CCWGG 6 cut(s) 28, 676, 1182, 1363, 1486, 1502
PspN4I GGNNCC 3 cut(s) 712, 898, 1250
PspPI GGNCC 3 cut(s) 232, 806, 1145
PsuI RGATCY 4 cut(s) 189, 571, 710, 970
PvuI CGATCG 1 cut(s) 91
RsaI GTAC 3 cut(s) 614, 720, 1526
RsaNI GTAC 3 cut(s) 613, 719, 1525
RseI CAYNNNNRTG 3 cut(s) 224, 670, 1059
SacII CCGCGG 1 cut(s) 1072
SapI GCTCTTC 1 cut(s) 162
SaqAI TTAA 4 cut(s) 525, 774, 983, 1167
Sau3AI GATC 9 cut(s) 84, 88, 189, 198, 571, 710, 970, 1308, 1432
Sau96I GGNCC 3 cut(s) 232, 806, 1145
SchI GAGTC 4 cut(s) 138, 754, 1022, 1074
ScrFI CCNGG 6 cut(s) 30, 678, 1184, 1365, 1488, 1504
SexAI ACCWGGT 1 cut(s) 1486
SfaNI GCATC 1 cut(s) 825
Sfr274I CTCGAG 1 cut(s) 1478
Sfr303I CCGCGG 1 cut(s) 1072
SgrBI CCGCGG 1 cut(s) 1072
SlaI CTCGAG 1 cut(s) 1478
SmiMI CAYNNNNRTG 3 cut(s) 224, 670, 1059
SmlI CTYRAG 3 cut(s) 118, 857, 1478
SmoI CTYRAG 3 cut(s) 118, 857, 1478
SphI GCATGC 1 cut(s) 1320
Sse9I AATT 8 cut(s) 509, 599, 759, 1098, 1137, 1171, 1223, 1564
SsiI CCGC 4 cut(s) 307, 1069, 1071, 1412
SspMI CTAG 2 cut(s) 1022, 1304
StyD4I CCNGG 6 cut(s) 28, 676, 1182, 1363, 1486, 1502
StyI CCWWGG 1 cut(s) 532
TaaI ACNGT 4 cut(s) 370, 832, 981, 1216
TaiI ACGT 1 cut(s) 1263
TaqI TCGA 2 cut(s) 87, 1479
TasI AATT 8 cut(s) 509, 599, 759, 1098, 1137, 1171, 1223, 1564
TatI WGTACW 1 cut(s) 718
TfiI GAWTC 3 cut(s) 587, 941, 1387
Tru1I TTAA 4 cut(s) 525, 774, 983, 1167
Tru9I TTAA 4 cut(s) 525, 774, 983, 1167
TscAI CASTG 6 cut(s) 48, 175, 297, 744, 837, 951
TseFI GTSAC 2 cut(s) 864, 1189
Tsp45I GTSAC 2 cut(s) 864, 1189
TspDTI ATGAA 7 cut(s) 184, 242, 464, 592, 612, 648, 654
TspGWI ACGGA 1 cut(s) 236
TspRI CASTG 6 cut(s) 48, 175, 297, 744, 837, 951
Van91I CCANNNNNTGG 2 cut(s) 796, 1364
XapI RAATTY 3 cut(s) 599, 1171, 1223
XbaI TCTAGA 1 cut(s) 1303
XceI RCATGY 3 cut(s) 675, 1033, 1320
XcmI CCANNNNNNNNNTGG 1 cut(s) 758
XhoI CTCGAG 1 cut(s) 1478
XspI CTAG 2 cut(s) 1022, 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.