Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009663

Physical Location & Seq

Genomic Coordinates Forward (+)

55616257 .. 55620429

Gene Structure 4173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0386900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGAGGTATCGTCGGCAATATCGGAGATTATATTGGAAGAATGGAATGGTTCATCTTCAACCAAACTCTCCAGAACTGCCACTATAACTTCGTCTCCTTCACTCTGCATCCAAAGATCCGGGAACCGGTTCCACCATGTTTGGCGGCGAGTTCTTCAAGCATTTGTACCTGAGGGCTTTCCCAGTAGTGTTACTCCAGATTATGTCCCTTTTCAAATGTGGGATTCACTTCAGGGTCTTTCTACTTACATAAGGATGATGCTTTCTACCCAAGCTCTGCTGGGTGCTATTGGGGTCGGTGAGAAATCAGCCACTGTGATTGGTGCCACCTTTCAGTGGTTCTTGAGGGACTTGACTGGAATGCTGGGAGGTATCTTATTCACATTTTATCAGGGCTCAAATCTGGATTGCAATGCTAAAATGTGGCGCTTAGTTGCAGATCTTATGAATGACCTTGGAATGTTGATGGACCTTGTTTCGCCTTTGTTTCCATCTGCTTTTGTGTTTGTGGTCTGTCTAGGAAGCCTATCGAGATCATTCACCGGTGTTGCAAGTGGAGCAACTAGAGCTGCTTTGACACAACATTTTGCTCTTCAGAATAATGCTGCAGATATATCTGCGAAGGAAGGAAGTCAAGAAACAATGGCAACAATGATTGGTATGGCACTGGGCATGCTTCTTGCTCGTGTAACTATGGAGCACCCACTAGCTATTTGGTTTTCTTTTTTGTCTCTCACCGTGTTCCATATGTATGCAAACTACAAGGCTGTCCGGTGCCTTGCATTAAATTCTTTGAACCCTCAGAGGTGCTCAATTCTTTTGCAGCATTTTATGAAAACTGGCAAAGTTCTCTCACCTGAACAGGTATCTAAGATGGAGCATGTTTTACCCATATGGGCATCTTCATGGAGCTCAAAGAATTCAGAGTCGATGAATGTGGATATATCTCTAGGTGTCAGGGTCTCCTCACTAAATCACCTGGAACTGAGGGAGTTATTGCATTCTGCGGGCTCTCATTACAAGAAAGCCAAGTACTTGCTGGTGGAAAGGAAAGGAATTGTCTGCATTGTTATGCACAAAGATTCTGCTGCCACAGATGTCTTGCAGTCATTTTTTCATGCAAATGCAATGGCAAATATAATGGATCAACACCGAAGTCTTCATTCTGAAAGCCAATCATGGATGGATAAACATTATGAAGCTTTCATTCAAAAGTTAAAGGTATCTGGTTGGAAAACAGAACGTCTTTTATCACCAACGATCATTTGGAAGGCAAACTGGATCTGTGGGTCTTCTGATGGCAAGATTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009628 GO:0016491 GO:0016651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050896 GO:0051536 GO:0051540 GO:0055114 GO:0070482

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe_hyd_SSU Fe_hyd_lg_C

Protein Analysis

437

Amino Acids

48.61

Weight (kDa)

8.75

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVB_sens_prot	PF04884	44 - 280	3.3e-93	Vitamin B6 photo-protection and homoeostasis domain
UVB_sens_C	PF24160	283 - 427	4.5e-11	Root UVB sensitive protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009663)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00600 FvH4_3g00610
prunus_persica	Prupe.4G007200_v2.0.a1
pyrus_communis	pycom05g32580
rosa_chinensis	RchiOBHm_Chr5g0000811 RchiOBHm_Chr5g0000821
rosa_laevigata	RLG00000030898 RLG00000030899
rosa_multiflora	Rmu_co8292539.1_g000001 Rmu_sc0000255.1_g000011 Rmu_sc0010050.1_g000002
rosa_roxburghii	Rroxscaffold_1G00075420
rosa_rugosa	Rorug04G0386900 Rorug04G0386900
rosa_samantha	Rh5AG006700 Rh5BG008700 Rh5BG008800 Rh5CG007300 Rh5CG007400 Rh5DG007300 Rh5DG007400
rosa_wichuraiana	Rw5G000690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	323, 774
AciI	CCGC	2 cut(s)	145, 1007
AclWI	GGATC	3 cut(s)	111, 1152, 1289
AcsI	RAATTY	2 cut(s)	787, 919
AcuI	CTGAAG	2 cut(s)	215, 578
AfaI	GTAC	2 cut(s)	168, 1034
AfiI	CCNNNNNNNGG	2 cut(s)	126, 336
AgeI	ACCGGT	2 cut(s)	126, 542
AgsI	TTSAA	5 cut(s)	60, 158, 215, 796, 1211
AjnI	CCWGG	1 cut(s)	978
AluBI	AGCT	5 cut(s)	275, 569, 710, 912, 1202
AluI	AGCT	5 cut(s)	275, 569, 710, 912, 1202
Alw21I	GWGCWC	3 cut(s)	702, 812, 914
Alw26I	GTCTC	3 cut(s)	99, 735, 967
AlwI	GGATC	3 cut(s)	111, 1152, 1289
AlwNI	CAGNNNCTG	1 cut(s)	314
ApeKI	GCWGC	4 cut(s)	569, 605, 823, 1088
ApoI	RAATTY	2 cut(s)	787, 919
AsiGI	ACCGGT	2 cut(s)	126, 542
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	469
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	6 cut(s)	311, 532, 727, 846, 968, 1245
AvaII	GGWCC	1 cut(s)	469
AxyI	CCTNAGG	1 cut(s)	171
BanI	GGYRCC	2 cut(s)	323, 774
BanII	GRGCYC	3 cut(s)	398, 914, 1013
BauI	CACGAG	1 cut(s)	684
BbsI	GAAGAC	2 cut(s)	1151, 1284
Bbv12I	GWGCWC	3 cut(s)	702, 812, 914
BbvI	GCAGC	4 cut(s)	556, 592, 835, 1075
BccI	CCATC	5 cut(s)	460, 499, 868, 1177, 1292
BciT130I	CCWGG	1 cut(s)	980
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	3 cut(s)	99, 735, 967
BfaI	CTAG	5 cut(s)	518, 564, 707, 950, 1312
BfmI	CTRYAG	1 cut(s)	606
BfoI	RGCGCY	1 cut(s)	430
BglII	AGATCT	1 cut(s)	439
BisI	GCNGC	5 cut(s)	146, 570, 606, 824, 1089
BlsI	GCNGC	5 cut(s)	147, 571, 607, 825, 1090
BmcAI	AGTACT	1 cut(s)	1034
Bme1390I	CCNGG	2 cut(s)	121, 980
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	4 cut(s)	125, 131, 325, 776
BmrFI	CCNGG	2 cut(s)	121, 980
BmrI	ACTGGG	2 cut(s)	177, 677
BmsI	GCATC	3 cut(s)	117, 249, 908
BmuI	ACTGGG	2 cut(s)	177, 677
BpiI	GAAGAC	2 cut(s)	1151, 1284
BpmI	CTGGAG	2 cut(s)	55, 180
BpuEI	CTTGAG	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	967
BsaJI	CCNNGG	1 cut(s)	454
BsaWI	WCCGGW	3 cut(s)	126, 542, 771
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 79, 109
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 336
Bse118I	RCCGGY	2 cut(s)	126, 542
Bse1I	ACTGG	5 cut(s)	183, 361, 672, 844, 1283
Bse21I	CCTNAGG	1 cut(s)	171
Bse3DI	GCAATG	2 cut(s)	418, 1134
BseBI	CCWGG	1 cut(s)	980
BseDI	CCNNGG	1 cut(s)	454
BseGI	GGATG	3 cut(s)	108, 261, 1188
BseLI	CCNNNNNNNGG	2 cut(s)	126, 336
BseMI	GCAATG	2 cut(s)	418, 1134
BseMII	CTCAG	3 cut(s)	162, 815, 977
BseNI	ACTGG	5 cut(s)	183, 361, 672, 844, 1283
BseRI	GAGGAG	1 cut(s)	955
BseXI	GCAGC	4 cut(s)	556, 592, 835, 1075
BseYI	CCCAGC	2 cut(s)	280, 364
BshNI	GGYRCC	2 cut(s)	323, 774
BshTI	ACCGGT	2 cut(s)	126, 542
BsiHKAI	GWGCWC	3 cut(s)	702, 812, 914
BsiSI	CCGG	4 cut(s)	120, 127, 543, 772
BslFI	GGGAC	2 cut(s)	191, 362
BslI	CCNNNNNNNGG	2 cut(s)	126, 336
BsmAI	GTCTC	3 cut(s)	99, 735, 967
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	2 cut(s)	191, 362
BsmI	GAATGC	2 cut(s)	366, 1000
Bso31I	GGTCTC	1 cut(s)	967
Bsp1286I	GDGCHC	5 cut(s)	398, 702, 812, 914, 1013
Bsp143I	GATC	6 cut(s)	116, 439, 533, 1144, 1260, 1281
BspACI	CCGC	2 cut(s)	145, 1007
BspCNI	CTCAG	3 cut(s)	163, 814, 978
BspLI	GGNNCC	4 cut(s)	125, 131, 325, 776
BspMAI	CTGCAG	1 cut(s)	610
BspPI	GGATC	3 cut(s)	111, 1152, 1289
BspQI	GCTCTTC	1 cut(s)	597
BspT107I	GGYRCC	2 cut(s)	323, 774
BspTNI	GGTCTC	1 cut(s)	967
BsrDI	GCAATG	2 cut(s)	418, 1134
BsrFI	RCCGGY	2 cut(s)	126, 542
BsrI	ACTGG	5 cut(s)	183, 361, 672, 844, 1283
BssAI	RCCGGY	2 cut(s)	126, 542
BssECI	CCNNGG	1 cut(s)	454
BssMI	GATC	6 cut(s)	116, 439, 533, 1144, 1260, 1281
BssSI	CACGAG	1 cut(s)	684
BssT1I	CCWWGG	1 cut(s)	454
Bst2BI	CACGAG	1 cut(s)	684
Bst2UI	CCWGG	1 cut(s)	980
Bst4CI	ACNGT	2 cut(s)	316, 739
Bst6I	CTCTTC	1 cut(s)	597
BstC8I	GCNNGC	2 cut(s)	674, 1009
BstDEI	CTNAG	5 cut(s)	171, 430, 801, 870, 986
BstF5I	GGATG	3 cut(s)	108, 261, 1188
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	6 cut(s)	119, 442, 536, 1147, 1263, 1284
BstMAI	GTCTC	3 cut(s)	99, 735, 967
BstMBI	GATC	6 cut(s)	116, 439, 533, 1144, 1260, 1281
BstMWI	GCNNNNNNNGC	2 cut(s)	557, 566
BstNI	CCWGG	1 cut(s)	980
BstNSI	RCATGY	2 cut(s)	676, 884
BstSCI	CCNGG	2 cut(s)	119, 978
BstSFI	CTRYAG	1 cut(s)	606
BstV1I	GCAGC	4 cut(s)	556, 592, 835, 1075
BstV2I	GAAGAC	2 cut(s)	1151, 1284
BstX2I	RGATCY	3 cut(s)	116, 439, 1281
BstYI	RGATCY	3 cut(s)	116, 439, 1281
Bsu36I	CCTNAGG	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	108, 261, 1188
BtsIMutI	CAGTG	3 cut(s)	312, 341, 665
Cac8I	GCNNGC	2 cut(s)	674, 1009
CaiI	CAGNNNCTG	1 cut(s)	314
CfoI	GCGC	1 cut(s)	429
Cfr10I	RCCGGY	2 cut(s)	126, 542
Cfr13I	GGNCC	1 cut(s)	469
Csp6I	GTAC	2 cut(s)	167, 1033
CspAI	ACCGGT	2 cut(s)	126, 542
CspCI	CAANNNNNGTGG	4 cut(s)	122, 157, 301, 336
CviAII	CATG	6 cut(s)	137, 673, 881, 906, 1118, 1179
CviQI	GTAC	2 cut(s)	167, 1033
DdeI	CTNAG	5 cut(s)	171, 430, 801, 870, 986
DpnI	GATC	6 cut(s)	118, 441, 535, 1146, 1262, 1283
DpnII	GATC	6 cut(s)	116, 439, 533, 1144, 1260, 1281
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Ecl136II	GAGCTC	1 cut(s)	912
Eco130I	CCWWGG	1 cut(s)	454
Eco24I	GRGCYC	3 cut(s)	398, 914, 1013
Eco31I	GGTCTC	1 cut(s)	967
Eco47I	GGWCC	1 cut(s)	469
Eco53kI	GAGCTC	1 cut(s)	912
Eco57I	CTGAAG	2 cut(s)	215, 578
Eco81I	CCTNAGG	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	912
EcoRI	GAATTC	1 cut(s)	919
EcoRII	CCWGG	1 cut(s)	978
EcoT14I	CCWWGG	1 cut(s)	454
EcoT38I	GRGCYC	3 cut(s)	398, 914, 1013
ErhI	CCWWGG	1 cut(s)	454
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	6 cut(s)	140, 676, 884, 909, 1121, 1182
FaqI	GGGAC	2 cut(s)	191, 362
FatI	CATG	6 cut(s)	136, 672, 880, 905, 1117, 1178
FauI	CCCGC	1 cut(s)	1000
FauNDI	CATATG	2 cut(s)	747, 893
Fnu4HI	GCNGC	5 cut(s)	146, 570, 606, 824, 1089
FokI	GGATG	3 cut(s)	95, 268, 1195
FriOI	GRGCYC	3 cut(s)	398, 914, 1013
Fsp4HI	GCNGC	5 cut(s)	146, 570, 606, 824, 1089
FspBI	CTAG	5 cut(s)	518, 564, 707, 950, 1312
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	5 cut(s)	146, 570, 606, 824, 1089
GsaI	CCCAGC	2 cut(s)	284, 368
GsuI	CTGGAG	2 cut(s)	55, 180
HaeII	RGCGCY	1 cut(s)	430
HapII	CCGG	4 cut(s)	120, 127, 543, 772
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	6 cut(s)	140, 676, 884, 909, 1121, 1182
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	1200
HinfI	GANTC	3 cut(s)	224, 926, 1082
HpaII	CCGG	4 cut(s)	120, 127, 543, 772
HphI	GGTGA	6 cut(s)	311, 532, 727, 846, 968, 1245
Hpy188I	TCNGA	6 cut(s)	25, 597, 804, 925, 1168, 1297
Hpy188III	TCNNGA	6 cut(s)	72, 197, 343, 404, 531, 635
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	4 cut(s)	108, 616, 620, 1264
HpyCH4III	ACNGT	2 cut(s)	316, 739
HpyCH4IV	ACGT	1 cut(s)	1243
HpyF10VI	GCNNNNNNNGC	2 cut(s)	557, 566
HpyF3I	CTNAG	5 cut(s)	171, 430, 801, 870, 986
HpySE526I	ACGT	1 cut(s)	1243
Hsp92II	CATG	6 cut(s)	140, 676, 884, 909, 1121, 1182
HspAI	GCGC	1 cut(s)	427
Kzo9I	GATC	6 cut(s)	116, 439, 533, 1144, 1260, 1281
LguI	GCTCTTC	1 cut(s)	597
LmnI	GCTCC	4 cut(s)	557, 697, 877, 909
Lsp1109I	GCAGC	4 cut(s)	556, 592, 835, 1075
LweI	GCATC	3 cut(s)	117, 249, 908
MaeI	CTAG	5 cut(s)	518, 564, 707, 950, 1312
MaeII	ACGT	1 cut(s)	1243
MaeIII	GTNAC	2 cut(s)	190, 688
MalI	GATC	6 cut(s)	118, 441, 535, 1146, 1262, 1283
MboI	GATC	6 cut(s)	116, 439, 533, 1144, 1260, 1281
MboII	GAAGA	7 cut(s)	48, 50, 146, 584, 894, 1151, 1284
MflI	RGATCY	3 cut(s)	116, 439, 1281
MhlI	GDGCHC	5 cut(s)	398, 702, 812, 914, 1013
MluCI	AATT	4 cut(s)	787, 813, 919, 1056
MlyI	GAGTC	1 cut(s)	935
MmeI	TCCRAC	1 cut(s)	1211
MnlI	CCTC	7 cut(s)	166, 339, 362, 798, 810, 976, 981
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	2 cut(s)	785, 1217
MslI	CAYNNNNRTG	5 cut(s)	254, 750, 904, 1070, 1122
MspI	CCGG	4 cut(s)	120, 127, 543, 772
MspR9I	CCNGG	2 cut(s)	121, 980
Mva1269I	GAATGC	2 cut(s)	366, 1000
MvaI	CCWGG	1 cut(s)	980
MwoI	GCNNNNNNNGC	2 cut(s)	557, 566
NciI	CCSGG	1 cut(s)	121
NdeI	CATATG	2 cut(s)	747, 893
NdeII	GATC	6 cut(s)	116, 439, 533, 1144, 1260, 1281
NlaIII	CATG	6 cut(s)	140, 676, 884, 909, 1121, 1182
NlaIV	GGNNCC	4 cut(s)	125, 131, 325, 776
NspI	RCATGY	2 cut(s)	676, 884
PaeI	GCATGC	1 cut(s)	676
PciSI	GCTCTTC	1 cut(s)	597
PctI	GAATGC	2 cut(s)	366, 1000
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	224, 1082
PfoI	TCCNGGA	1 cut(s)	119
PinAI	ACCGGT	2 cut(s)	126, 542
PkrI	GCNGC	5 cut(s)	147, 571, 607, 825, 1090
PleI	GAGTC	1 cut(s)	934
PpsI	GAGTC	1 cut(s)	934
Psp124BI	GAGCTC	1 cut(s)	914
Psp6I	CCWGG	1 cut(s)	978
PspFI	CCCAGC	2 cut(s)	280, 364
PspGI	CCWGG	1 cut(s)	978
PspN4I	GGNNCC	4 cut(s)	125, 131, 325, 776
PspPI	GGNCC	1 cut(s)	469
PstI	CTGCAG	1 cut(s)	610
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	3 cut(s)	116, 439, 1281
RsaI	GTAC	2 cut(s)	168, 1034
RsaNI	GTAC	2 cut(s)	167, 1033
RseI	CAYNNNNRTG	5 cut(s)	254, 750, 904, 1070, 1122
SacI	GAGCTC	1 cut(s)	914
SapI	GCTCTTC	1 cut(s)	597
SaqAI	TTAA	2 cut(s)	785, 1217
SatI	GCNGC	5 cut(s)	146, 570, 606, 824, 1089
Sau3AI	GATC	6 cut(s)	116, 439, 533, 1144, 1260, 1281
Sau96I	GGNCC	1 cut(s)	469
ScaI	AGTACT	1 cut(s)	1034
SchI	GAGTC	1 cut(s)	935
ScrFI	CCNGG	2 cut(s)	121, 980
SduI	GDGCHC	5 cut(s)	398, 702, 812, 914, 1013
SfaNI	GCATC	3 cut(s)	117, 249, 908
SfcI	CTRYAG	1 cut(s)	606
SgrAI	CRCCGGYG	1 cut(s)	542
SinI	GGWCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	5 cut(s)	254, 750, 904, 1070, 1122
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
SphI	GCATGC	1 cut(s)	676
Sse9I	AATT	4 cut(s)	787, 813, 919, 1056
SsiI	CCGC	2 cut(s)	145, 1007
SspMI	CTAG	5 cut(s)	518, 564, 707, 950, 1312
SstI	GAGCTC	1 cut(s)	914
StyD4I	CCNGG	2 cut(s)	119, 978
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	2 cut(s)	316, 739
TaiI	ACGT	1 cut(s)	1246
TaqI	TCGA	2 cut(s)	530, 929
TasI	AATT	4 cut(s)	787, 813, 919, 1056
TatI	WGTACW	1 cut(s)	1032
TauI	GCSGC	1 cut(s)	148
TfiI	GAWTC	2 cut(s)	224, 1082
Tru1I	TTAA	2 cut(s)	785, 1217
Tru9I	TTAA	2 cut(s)	785, 1217
TscAI	CASTG	3 cut(s)	319, 341, 672
TseI	GCWGC	4 cut(s)	569, 605, 823, 1088
TspDTI	ATGAA	9 cut(s)	42, 461, 848, 894, 947, 1106, 1151, 1195, 1212
TspRI	CASTG	3 cut(s)	319, 341, 672
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	2 cut(s)	787, 919
XceI	RCATGY	2 cut(s)	676, 884
XcmI	CCANNNNNNNNNTGG	3 cut(s)	711, 1036, 1263
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	5 cut(s)	518, 564, 707, 950, 1312
ZrmI	AGTACT	1 cut(s)	1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.