Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009663

Physical Location & Seq

Genomic Coordinates Forward (+)

96168941 .. 96170582

Gene Structure 1642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00075420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGTAGGGATATTAGCAACGACGGCACAGCAGTCGTTCGTTCTCTATTACAGGAGAGATTCAGAGAGTTGCAGAGAGTGAAGGTAATGAGAGAACAGAGAGAGGTTTTGAGAATGCTTGCTCTCTCTGAGCCAAACCACTCCATGAACTACGAGCCGGAAGCGGCAAGGTTGTTTTTCCATCCTAATGCTCATGATCATCATGTCCAGCTTGCTCATGGTCATGGTTCTCCGTCATCATCTTCACTGTCCCTGTGGCCAACATTGCAGTTGCAGAAGAGAAAGCGTGAGGAGGAGTACTATACACATTGGAGGAGGAGGAAGATCATTAATGAGATCCCGTTGATCAACTTGTGGCCAACGGTCACAGACACCTCTTCATCTTCATCAACTTCAGTAGAAACTTGTTCATCGAACAAGATGGAAACTTCTGAGTGTGACTCTGATGATTCTGTTTCCAAATTGACATCGGTCAATCTGGGTCAGCTTGTAGAGGAAATTGACGACCTAGAAAGTGATCCAAGTCAGTTTGAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

20.58

Weight (kDa)

5.47

Isoelectric Point (pI)

65.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009663)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00600 FvH4_3g00610
prunus_persica	Prupe.4G007200_v2.0.a1
pyrus_communis	pycom05g32580
rosa_chinensis	RchiOBHm_Chr5g0000811 RchiOBHm_Chr5g0000821
rosa_laevigata	RLG00000030898 RLG00000030899
rosa_multiflora	Rmu_co8292539.1_g000001 Rmu_sc0000255.1_g000011 Rmu_sc0010050.1_g000002
rosa_roxburghii	Rroxscaffold_1G00075420
rosa_rugosa	Rorug04G0386900 Rorug04G0386900
rosa_samantha	Rh5AG006700 Rh5BG008700 Rh5BG008800 Rh5CG007300 Rh5CG007400 Rh5DG007300 Rh5DG007400
rosa_wichuraiana	Rw5G000690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	2 cut(s)	331, 512
AcoI	YGGCCR	2 cut(s)	257, 356
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	533
AluBI	AGCT	2 cut(s)	211, 487
AluI	AGCT	2 cut(s)	211, 487
AlwI	GGATC	2 cut(s)	331, 512
AoxI	GGCC	2 cut(s)	257, 356
AseI	ATTAAT	1 cut(s)	330
BalI	TGGCCA	2 cut(s)	259, 358
BccI	CCATC	2 cut(s)	189, 415
BceAI	ACGGC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BclI	TGATCA	2 cut(s)	196, 345
BfaI	CTAG	1 cut(s)	509
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmcAI	AGTACT	1 cut(s)	299
BoxI	GACNNNNGTC	1 cut(s)	470
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
Bse3DI	GCAATG	1 cut(s)	263
BseGI	GGATG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	263
BseMII	CTCAG	2 cut(s)	120, 423
BseRI	GAGGAG	4 cut(s)	305, 308, 328, 331
BshFI	GGCC	2 cut(s)	259, 358
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	235
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	2 cut(s)	259, 358
Bsp143I	GATC	5 cut(s)	196, 324, 336, 345, 517
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	2 cut(s)	259, 358
BspCNI	CTCAG	2 cut(s)	121, 424
BspHI	TCATGA	1 cut(s)	193
BspPI	GGATC	2 cut(s)	331, 512
BsrDI	GCAATG	1 cut(s)	263
BssMI	GATC	5 cut(s)	196, 324, 336, 345, 517
Bst4CI	ACNGT	2 cut(s)	249, 364
Bst6I	CTCTTC	2 cut(s)	272, 382
BstC8I	GCNNGC	2 cut(s)	120, 213
BstDEI	CTNAG	2 cut(s)	129, 432
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	5 cut(s)	199, 327, 339, 348, 520
BstMBI	GATC	5 cut(s)	196, 324, 336, 345, 517
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 265
BstPAI	GACNNNNGTC	1 cut(s)	470
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
BsuRI	GGCC	2 cut(s)	259, 358
BtsCI	GGATG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	245
Cac8I	GCNNGC	2 cut(s)	120, 213
CciI	TCATGA	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	5 cut(s)	145, 194, 203, 218, 224
CviJI	RGCY	6 cut(s)	133, 157, 211, 259, 358, 487
CviKI_1	RGCY	6 cut(s)	133, 157, 211, 259, 358, 487
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	2 cut(s)	129, 432
DpnI	GATC	5 cut(s)	198, 326, 338, 347, 519
DpnII	GATC	5 cut(s)	196, 324, 336, 345, 517
EaeI	YGGCCR	2 cut(s)	257, 356
Eam1104I	CTCTTC	2 cut(s)	272, 382
EarI	CTCTTC	2 cut(s)	272, 382
Eco57I	CTGAAG	1 cut(s)	378
FaeI	CATG	5 cut(s)	148, 197, 206, 221, 227
FaiI	YATR	6 cut(s)	146, 195, 204, 219, 225, 303
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	5 cut(s)	144, 193, 202, 217, 223
FbaI	TGATCA	2 cut(s)	196, 345
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	1 cut(s)	509
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	259, 358
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	5 cut(s)	148, 197, 206, 221, 227
HinfI	GANTC	3 cut(s)	60, 440, 449
HpaII	CCGG	1 cut(s)	158
Hpy188I	TCNGA	4 cut(s)	65, 130, 433, 445
Hpy188III	TCNNGA	1 cut(s)	194
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	2 cut(s)	249, 364
HpyCH4V	TGCA	3 cut(s)	73, 268, 274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 265
HpyF3I	CTNAG	2 cut(s)	129, 432
Hsp92II	CATG	5 cut(s)	148, 197, 206, 221, 227
Ksp22I	TGATCA	2 cut(s)	196, 345
Kzo9I	GATC	5 cut(s)	196, 324, 336, 345, 517
LpnPI	CCDG	5 cut(s)	38, 171, 221, 266, 464
MaeI	CTAG	1 cut(s)	509
MaeIII	GTNAC	2 cut(s)	364, 437
MalI	GATC	5 cut(s)	198, 326, 338, 347, 519
MboI	GATC	5 cut(s)	196, 324, 336, 345, 517
MboII	GAAGA	5 cut(s)	234, 289, 334, 369, 375
MflI	RGATCY	1 cut(s)	336
MlsI	TGGCCA	2 cut(s)	259, 358
MluCI	AATT	2 cut(s)	461, 498
MluNI	TGGCCA	2 cut(s)	259, 358
MlyI	GAGTC	1 cut(s)	434
MnlI	CCTC	8 cut(s)	97, 283, 286, 306, 309, 312, 385, 487
Mox20I	TGGCCA	2 cut(s)	259, 358
MscI	TGGCCA	2 cut(s)	259, 358
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	2 cut(s)	186, 222
Msp20I	TGGCCA	2 cut(s)	259, 358
MspI	CCGG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	24, 265
NdeII	GATC	5 cut(s)	196, 324, 336, 345, 517
NlaIII	CATG	5 cut(s)	148, 197, 206, 221, 227
NmuCI	GTSAC	2 cut(s)	364, 437
PagI	TCATGA	1 cut(s)	193
PctI	GAATGC	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	60, 449
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	434
PshAI	GACNNNNGTC	1 cut(s)	470
PshBI	ATTAAT	1 cut(s)	330
PsuI	RGATCY	1 cut(s)	336
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	2 cut(s)	186, 222
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	5 cut(s)	196, 324, 336, 345, 517
ScaI	AGTACT	1 cut(s)	299
SchI	GAGTC	1 cut(s)	434
SetI	ASST	7 cut(s)	87, 108, 173, 213, 377, 489, 510
SmiMI	CAYNNNNRTG	2 cut(s)	186, 222
Sse9I	AATT	2 cut(s)	461, 498
SsiI	CCGC	1 cut(s)	164
SspMI	CTAG	1 cut(s)	509
TaaI	ACNGT	2 cut(s)	249, 364
TaqI	TCGA	1 cut(s)	413
TaqII	GACCGA	1 cut(s)	460
TasI	AATT	2 cut(s)	461, 498
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	2 cut(s)	60, 449
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	2 cut(s)	364, 437
Tsp45I	GTSAC	2 cut(s)	364, 437
TspDTI	ATGAA	4 cut(s)	161, 369, 375, 399
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	252
VspI	ATTAAT	1 cut(s)	330
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XspI	CTAG	1 cut(s)	509
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.