RLG00000030898

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009663
Physical Location & Seq
Reverse (-)
488430 .. 488909
480 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030898

Sequence Viewer

Length: 480 bp
ATGGATACGGAAATCCATAATGATACTGCTGTCATTCATTCCTCCATTGCTCTGTTGCAAGAAAGATTCAAACAGCTGCAGAGAGTGAAGGCGATGAGAGCAGAGAGAGAGGTACTGAGAGTGCTTCCTCTTTCAGCACCAAACCACTTCACCACGAAGAGCATGGATCCCAGTATGCATTACAAGGAGCCAGCAAGTTTGTTTTTAGACCCTCAGCCTGACCATTTTGTCCTTGCTCATGGCCATGGCCTTGGGTCACCATTGTCCCAAGTTTCTCTCTCTCTTTCTTTATGGCCAACATTGCAGACCAAGTATGAGGAGGAGGATTATACACATACGGGAACCGAAACCCAGCTGTTGATCAACTTTTGGCCAACAGTCACAAGCAGCCCTTCATCAAACTGTACTAGTTCGAACAAATTTGAAGATTGGGATACTGATTGTGACTCTGATGCTGTAGATACTTCTCTTCATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.94

Weight (kDa)

5.07

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AclWI GGATC 2 cut(s) 161, 174
AcoI YGGCCR 3 cut(s) 241, 293, 371
AcsI RAATTY 1 cut(s) 419
AfaI GTAC 2 cut(s) 114, 406
AgsI TTSAA 2 cut(s) 70, 425
AhlI ACTAGT 1 cut(s) 407
AluBI AGCT 2 cut(s) 76, 355
AluI AGCT 2 cut(s) 76, 355
AlwI GGATC 2 cut(s) 161, 174
AoxI GGCC 4 cut(s) 241, 247, 293, 371
ApeKI GCWGC 2 cut(s) 76, 387
ApoI RAATTY 1 cut(s) 419
AsuHPI GGTGA 2 cut(s) 142, 249
AsuII TTCGAA 1 cut(s) 413
BaeI ACNNNNGTAYC 2 cut(s) 15, 48
BalI TGGCCA 3 cut(s) 243, 295, 373
BamHI GGATCC 1 cut(s) 166
BbvCI CCTCAGC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 63, 399
BciVI GTATCC 1 cut(s) 427
BclI TGATCA 1 cut(s) 360
BcuI ACTAGT 1 cut(s) 407
BfaI CTAG 1 cut(s) 408
BfmI CTRYAG 2 cut(s) 77, 456
BfuI GTATCC 1 cut(s) 427
BisI GCNGC 2 cut(s) 77, 388
BlsI GCNGC 2 cut(s) 78, 389
BmiI GGNNCC 3 cut(s) 168, 189, 343
BmrI ACTGGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 442
BmuI ACTGGG 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 213
Bpu14I TTCGAA 1 cut(s) 413
BsaJI CCNNGG 2 cut(s) 244, 250
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 2 cut(s) 45, 299
BseDI CCNNGG 2 cut(s) 244, 250
BseMI GCAATG 2 cut(s) 45, 299
BseMII CTCAG 2 cut(s) 107, 227
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 332, 335
BseXI GCAGC 2 cut(s) 63, 399
BseYI CCCAGC 1 cut(s) 351
BshFI GGCC 4 cut(s) 243, 249, 295, 373
BslFI GGGAC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 4 cut(s) 243, 249, 295, 373
Bsp119I TTCGAA 1 cut(s) 413
Bsp143I GATC 2 cut(s) 166, 360
Bsp19I CCATGG 1 cut(s) 244
BspANI GGCC 4 cut(s) 243, 249, 295, 373
BspCNI CTCAG 2 cut(s) 108, 226
BspLI GGNNCC 3 cut(s) 168, 189, 343
BspMAI CTGCAG 1 cut(s) 81
BspPI GGATC 2 cut(s) 161, 174
BspQI GCTCTTC 1 cut(s) 152
BspT104I TTCGAA 1 cut(s) 413
BsrDI GCAATG 2 cut(s) 45, 299
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 2 cut(s) 244, 250
BssMI GATC 2 cut(s) 166, 360
BssT1I CCWWGG 2 cut(s) 244, 250
Bst4CI ACNGT 2 cut(s) 379, 404
Bst6I CTCTTC 2 cut(s) 152, 474
BstBI TTCGAA 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 2 cut(s) 116, 213
BstDSI CCRYGG 1 cut(s) 244
BstEII GGTNACC 1 cut(s) 255
BstKTI GATC 2 cut(s) 169, 363
BstMBI GATC 2 cut(s) 166, 360
BstMWI GCNNNNNNNGC 2 cut(s) 98, 301
BstPI GGTNACC 1 cut(s) 255
BstSFI CTRYAG 2 cut(s) 77, 456
BstV1I GCAGC 2 cut(s) 63, 399
BstX2I RGATCY 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 251
BstYI RGATCY 1 cut(s) 166
BsuI GTATCC 1 cut(s) 427
BsuRI GGCC 4 cut(s) 243, 249, 295, 373
BtgI CCRYGG 1 cut(s) 244
BtgZI GCGATG 1 cut(s) 107
Cac8I GCNNGC 1 cut(s) 192
Csp6I GTAC 2 cut(s) 113, 405
CviAII CATG 3 cut(s) 163, 239, 245
CviJI RGCY 9 cut(s) 76, 190, 217, 243, 249, 295, 355, 373, 390
CviKI_1 RGCY 9 cut(s) 76, 190, 217, 243, 249, 295, 355, 373, 390
CviQI GTAC 2 cut(s) 113, 405
DdeI CTNAG 2 cut(s) 116, 213
DpnI GATC 2 cut(s) 168, 362
DpnII GATC 2 cut(s) 166, 360
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 3 cut(s) 241, 293, 371
Eam1104I CTCTTC 2 cut(s) 152, 474
EarI CTCTTC 2 cut(s) 152, 474
Eco130I CCWWGG 2 cut(s) 244, 250
Eco91I GGTNACC 1 cut(s) 255
EcoO65I GGTNACC 1 cut(s) 255
EcoT14I CCWWGG 2 cut(s) 244, 250
EcoT22I ATGCAT 1 cut(s) 180
ErhI CCWWGG 2 cut(s) 244, 250
FaeI CATG 3 cut(s) 166, 242, 248
FaiI YATR 9 cut(s) 18, 164, 176, 240, 246, 292, 315, 330, 336
FalI AAGNNNNNCTT 2 cut(s) 376, 408
FaqI GGGAC 1 cut(s) 250
FatI CATG 3 cut(s) 162, 238, 244
FbaI TGATCA 1 cut(s) 360
Fnu4HI GCNGC 2 cut(s) 77, 388
Fsp4HI GCNGC 2 cut(s) 77, 388
FspBI CTAG 1 cut(s) 408
GluI GCNGC 2 cut(s) 77, 388
GsaI CCCAGC 1 cut(s) 355
HaeIII GGCC 4 cut(s) 243, 249, 295, 373
Hin1II CATG 3 cut(s) 166, 242, 248
HinfI GANTC 2 cut(s) 66, 446
HphI GGTGA 2 cut(s) 142, 249
Hpy188I TCNGA 1 cut(s) 451
HpyAV CCTTC 2 cut(s) 82, 402
HpyCH4III ACNGT 2 cut(s) 379, 404
HpyCH4V TGCA 4 cut(s) 58, 79, 178, 304
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 301
HpyF3I CTNAG 2 cut(s) 116, 213
Hsp92II CATG 3 cut(s) 166, 242, 248
Ksp22I TGATCA 1 cut(s) 360
Kzo9I GATC 2 cut(s) 166, 360
LguI GCTCTTC 1 cut(s) 152
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 4 cut(s) 184, 204, 231, 365
Lsp1109I GCAGC 2 cut(s) 63, 399
LweI GCATC 1 cut(s) 442
MaeI CTAG 1 cut(s) 408
MaeIII GTNAC 3 cut(s) 255, 379, 443
MalI GATC 2 cut(s) 168, 362
MboI GATC 2 cut(s) 166, 360
MboII GAAGA 3 cut(s) 169, 437, 461
MflI RGATCY 1 cut(s) 166
MlsI TGGCCA 3 cut(s) 243, 295, 373
MluCI AATT 1 cut(s) 419
MluNI TGGCCA 3 cut(s) 243, 295, 373
MlyI GAGTC 1 cut(s) 440
MnlI CCTC 7 cut(s) 52, 103, 138, 222, 310, 313, 316
Mox20I TGGCCA 3 cut(s) 243, 295, 373
Mph1103I ATGCAT 1 cut(s) 180
MscI TGGCCA 3 cut(s) 243, 295, 373
MslI CAYNNNNRTG 1 cut(s) 243
Msp20I TGGCCA 3 cut(s) 243, 295, 373
MspA1I CMGCKG 2 cut(s) 76, 355
MwoI GCNNNNNNNGC 2 cut(s) 98, 301
NcoI CCATGG 1 cut(s) 244
NdeII GATC 2 cut(s) 166, 360
NlaIII CATG 3 cut(s) 166, 242, 248
NlaIV GGNNCC 3 cut(s) 168, 189, 343
NmuCI GTSAC 3 cut(s) 255, 379, 443
NsiI ATGCAT 1 cut(s) 180
NspV TTCGAA 1 cut(s) 413
PciSI GCTCTTC 1 cut(s) 152
PfeI GAWTC 1 cut(s) 66
PkrI GCNGC 2 cut(s) 78, 389
PleI GAGTC 1 cut(s) 440
PpsI GAGTC 1 cut(s) 440
PspEI GGTNACC 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 351
PspN4I GGNNCC 3 cut(s) 168, 189, 343
PstI CTGCAG 1 cut(s) 81
PsuI RGATCY 1 cut(s) 166
PvuII CAGCTG 2 cut(s) 76, 355
RsaI GTAC 2 cut(s) 114, 406
RsaNI GTAC 2 cut(s) 113, 405
RseI CAYNNNNRTG 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 152
SatI GCNGC 2 cut(s) 77, 388
Sau3AI GATC 2 cut(s) 166, 360
SchI GAGTC 1 cut(s) 440
SetI ASST 3 cut(s) 78, 114, 357
SfaNI GCATC 1 cut(s) 442
SfcI CTRYAG 2 cut(s) 77, 456
SfuI TTCGAA 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 243
SpeI ACTAGT 1 cut(s) 407
Sse9I AATT 1 cut(s) 419
SspMI CTAG 1 cut(s) 408
StyI CCWWGG 2 cut(s) 244, 250
TaaI ACNGT 2 cut(s) 379, 404
TaqI TCGA 1 cut(s) 413
TasI AATT 1 cut(s) 419
TatI WGTACW 1 cut(s) 404
TfiI GAWTC 1 cut(s) 66
TseFI GTSAC 3 cut(s) 255, 379, 443
TseI GCWGC 2 cut(s) 76, 387
Tsp45I GTSAC 3 cut(s) 255, 379, 443
TspDTI ATGAA 3 cut(s) 26, 384, 461
TspGWI ACGGA 1 cut(s) 23
XapI RAATTY 1 cut(s) 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 1 cut(s) 408
Zsp2I ATGCAT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.