Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009663

Physical Location & Seq

Genomic Coordinates Reverse (-)

466007 .. 466638

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG007400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGTAGGGATATTAGCAACGACGGCACAGTAGTCGTTCGTTCCTCCATTGCTCTATTACAGGAGAGATTCAGAGAGTTGCAGAGAGTGAAGGTAATGAGAGAACAGAGAGAGGTTTTGAGAAGGCTTGCTCTCTCTGAGCCAAACCACTCCATGAACTACGAGCCGGAAGCGGCAAGGTTGCTTTTCCATCCTAATGCTCATGATCATCATGTCCAGCTTGCTCATGGTCATGGGTCTCCGTCATCATCTTCACTGTCCCTGTGGCCAACATTGCAGTTGCAGAAGAGAAAGTGTGAGGAGGAGTACTATACACATTGGAGGAGGAGGAAGATCATTAATGAGATCCCGGTGATCAACTTGTGGCCAACGGTCACAGACACCTCTTCATCTTCATTAACTTCAGTAGAAACTTGTACATCGAACAAGTTGGAAACTTCTGAGTGTGACTCTGATGATGTAGATACTTCTCTGCATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

18.42

Weight (kDa)

6.3

Isoelectric Point (pI)

64.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009663)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00600 FvH4_3g00610
prunus_persica	Prupe.4G007200_v2.0.a1
pyrus_communis	pycom05g32580
rosa_chinensis	RchiOBHm_Chr5g0000811 RchiOBHm_Chr5g0000821
rosa_laevigata	RLG00000030898 RLG00000030899
rosa_multiflora	Rmu_co8292539.1_g000001 Rmu_sc0000255.1_g000011 Rmu_sc0010050.1_g000002
rosa_roxburghii	Rroxscaffold_1G00075420
rosa_rugosa	Rorug04G0386900 Rorug04G0386900
rosa_samantha	Rh5AG006700 Rh5BG008700 Rh5BG008800 Rh5CG007300 Rh5CG007400 Rh5DG007300 Rh5DG007400
rosa_wichuraiana	Rw5G000690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	173
AclWI	GGATC	1 cut(s)	340
AcoI	YGGCCR	2 cut(s)	266, 365
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	2 cut(s)	308, 418
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	1 cut(s)	340
AoxI	GGCC	2 cut(s)	266, 365
AseI	ATTAAT	1 cut(s)	339
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	364
BalI	TGGCCA	2 cut(s)	268, 367
BccI	CCATC	1 cut(s)	198
BceAI	ACGGC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BclI	TGATCA	2 cut(s)	205, 354
BcnI	CCSGG	1 cut(s)	350
BcoDI	GTCTC	1 cut(s)	243
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
BmcAI	AGTACT	1 cut(s)	308
Bme1390I	CCNGG	1 cut(s)	350
BmrFI	CCNGG	1 cut(s)	350
BplI	GAGNNNNNCTC	2 cut(s)	434, 466
BpuMI	CCSGG	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	243
Bse3DI	GCAATG	2 cut(s)	48, 272
BseGI	GGATG	1 cut(s)	190
BseMI	GCAATG	2 cut(s)	48, 272
BseMII	CTCAG	2 cut(s)	129, 432
BseRI	GAGGAG	4 cut(s)	314, 317, 337, 340
BshFI	GGCC	2 cut(s)	268, 367
BsiSI	CCGG	2 cut(s)	167, 350
BslFI	GGGAC	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	268, 367
Bso31I	GGTCTC	1 cut(s)	243
Bsp1407I	TGTACA	1 cut(s)	416
Bsp143I	GATC	4 cut(s)	205, 333, 345, 354
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	2 cut(s)	268, 367
BspCNI	CTCAG	2 cut(s)	130, 433
BspHI	TCATGA	1 cut(s)	202
BspPI	GGATC	1 cut(s)	340
BspTNI	GGTCTC	1 cut(s)	243
BsrDI	GCAATG	2 cut(s)	48, 272
BsrGI	TGTACA	1 cut(s)	416
BssMI	GATC	4 cut(s)	205, 333, 345, 354
Bst4CI	ACNGT	3 cut(s)	31, 258, 373
Bst6I	CTCTTC	2 cut(s)	281, 391
BstAUI	TGTACA	1 cut(s)	416
BstC8I	GCNNGC	2 cut(s)	129, 222
BstDEI	CTNAG	2 cut(s)	138, 441
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	4 cut(s)	208, 336, 348, 357
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	4 cut(s)	205, 333, 345, 354
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 274
BstSCI	CCNGG	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	268, 367
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	2 cut(s)	129, 222
CciI	TCATGA	1 cut(s)	202
Csp6I	GTAC	2 cut(s)	307, 417
CviAII	CATG	5 cut(s)	154, 203, 212, 227, 233
CviJI	RGCY	6 cut(s)	127, 142, 166, 220, 268, 367
CviKI_1	RGCY	6 cut(s)	127, 142, 166, 220, 268, 367
CviQI	GTAC	2 cut(s)	307, 417
DdeI	CTNAG	2 cut(s)	138, 441
DpnI	GATC	4 cut(s)	207, 335, 347, 356
DpnII	GATC	4 cut(s)	205, 333, 345, 354
EaeI	YGGCCR	2 cut(s)	266, 365
Eam1104I	CTCTTC	2 cut(s)	281, 391
EarI	CTCTTC	2 cut(s)	281, 391
Eco31I	GGTCTC	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	387
FaeI	CATG	5 cut(s)	157, 206, 215, 230, 236
FaiI	YATR	6 cut(s)	155, 204, 213, 228, 234, 312
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	5 cut(s)	153, 202, 211, 226, 232
FbaI	TGATCA	2 cut(s)	205, 354
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	268, 367
HapII	CCGG	2 cut(s)	167, 350
Hin1II	CATG	5 cut(s)	157, 206, 215, 230, 236
HinfI	GANTC	2 cut(s)	69, 449
HpaII	CCGG	2 cut(s)	167, 350
HphI	GGTGA	1 cut(s)	364
Hpy188I	TCNGA	4 cut(s)	74, 139, 442, 454
Hpy188III	TCNNGA	1 cut(s)	203
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	85, 117
HpyCH4III	ACNGT	3 cut(s)	31, 258, 373
HpyCH4V	TGCA	4 cut(s)	82, 277, 283, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 274
HpyF3I	CTNAG	2 cut(s)	138, 441
Hsp92II	CATG	5 cut(s)	157, 206, 215, 230, 236
Ksp22I	TGATCA	2 cut(s)	205, 354
Kzo9I	GATC	4 cut(s)	205, 333, 345, 354
LpnPI	CCDG	5 cut(s)	47, 180, 230, 275, 363
MaeIII	GTNAC	2 cut(s)	373, 446
MalI	GATC	4 cut(s)	207, 335, 347, 356
MboI	GATC	4 cut(s)	205, 333, 345, 354
MboII	GAAGA	5 cut(s)	243, 298, 343, 378, 384
MflI	RGATCY	1 cut(s)	345
MlsI	TGGCCA	2 cut(s)	268, 367
MluNI	TGGCCA	2 cut(s)	268, 367
MlyI	GAGTC	1 cut(s)	443
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	8 cut(s)	55, 106, 292, 295, 315, 318, 321, 394
Mox20I	TGGCCA	2 cut(s)	268, 367
MscI	TGGCCA	2 cut(s)	268, 367
MseI	TTAA	3 cut(s)	339, 398, 481
MslI	CAYNNNNRTG	2 cut(s)	195, 231
Msp20I	TGGCCA	2 cut(s)	268, 367
MspI	CCGG	2 cut(s)	167, 350
MspR9I	CCNGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	2 cut(s)	24, 274
NciI	CCSGG	1 cut(s)	350
NdeII	GATC	4 cut(s)	205, 333, 345, 354
NlaIII	CATG	5 cut(s)	157, 206, 215, 230, 236
NmuCI	GTSAC	2 cut(s)	373, 446
PagI	TCATGA	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	175
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
PshBI	ATTAAT	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	345
RsaI	GTAC	2 cut(s)	308, 418
RsaNI	GTAC	2 cut(s)	307, 417
RseI	CAYNNNNRTG	2 cut(s)	195, 231
SaqAI	TTAA	3 cut(s)	339, 398, 481
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	4 cut(s)	205, 333, 345, 354
ScaI	AGTACT	1 cut(s)	308
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	1 cut(s)	350
SetI	ASST	5 cut(s)	96, 117, 182, 222, 386
SmiMI	CAYNNNNRTG	2 cut(s)	195, 231
SsiI	CCGC	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	348
TaaI	ACNGT	3 cut(s)	31, 258, 373
TaqI	TCGA	1 cut(s)	422
TatI	WGTACW	2 cut(s)	306, 416
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	69
Tru1I	TTAA	3 cut(s)	339, 398, 481
Tru9I	TTAA	3 cut(s)	339, 398, 481
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	2 cut(s)	373, 446
Tsp45I	GTSAC	2 cut(s)	373, 446
TspDTI	ATGAA	3 cut(s)	170, 378, 384
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	261
VspI	ATTAAT	1 cut(s)	339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
ZrmI	AGTACT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.