Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009663

Physical Location & Seq

Genomic Coordinates Reverse (-)

378324 .. 378806

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G007200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAGAGGGAAAGCCATGATGCCACAGTCATTCATTCCTCCATAGCTCTATTGCAGGAAAGGTTTCGGCAGCTGCAGAGAGTGAAGGCAATGAGAGAGGAGAGAGAGATTTTGAGAATGCTAGCTCTCTGTGACTCAGAACCAAAGCATAAGCAGTTGTTGATGATGATGAAGATGAATACTAGCAATCCCATTCCCACCGTGCATAACAAGCCGGCCGCGGAAAGGTTGTTTTTCCATCCTGATCACCATGATCTTATTCAGCCTCATGGTCATGGATCATCAGAATCCGGAATTTCTGTGTCCCTGTGGCCAGCACTGCAGAGCAAGCATGAGGATTATATACTGTATAGGAGCACTGAGACCCCGCTGTTGATCAACCTATGGCCTTCAGTCACAGATACCCCTTCGTTAGACACTTGTTCAAATAAATTCCAAGGTTCCGATTGCGACTCTGATGTGGATACTTCTCTTCATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

18.32

Weight (kDa)

5.96

Isoelectric Point (pI)

55.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009663)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00600 FvH4_3g00610
prunus_persica	Prupe.4G007200_v2.0.a1
pyrus_communis	pycom05g32580
rosa_chinensis	RchiOBHm_Chr5g0000811 RchiOBHm_Chr5g0000821
rosa_laevigata	RLG00000030898 RLG00000030899
rosa_multiflora	Rmu_co8292539.1_g000001 Rmu_sc0000255.1_g000011 Rmu_sc0010050.1_g000002
rosa_roxburghii	Rroxscaffold_1G00075420
rosa_rugosa	Rorug04G0386900 Rorug04G0386900
rosa_samantha	Rh5AG006700 Rh5BG008700 Rh5BG008800 Rh5CG007300 Rh5CG007400 Rh5DG007300 Rh5DG007400
rosa_wichuraiana	Rw5G000690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	221
AccIII	TCCGGA	1 cut(s)	290
AciI	CCGC	3 cut(s)	219, 221, 368
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	2 cut(s)	216, 311
AcsI	RAATTY	2 cut(s)	294, 431
AcuI	CTGAAG	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	225
AgsI	TTSAA	1 cut(s)	426
AluBI	AGCT	3 cut(s)	47, 73, 125
AluI	AGCT	3 cut(s)	47, 73, 125
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	1 cut(s)	286
Aor13HI	TCCGGA	1 cut(s)	290
AoxI	GGCC	3 cut(s)	216, 311, 386
ApeKI	GCWGC	2 cut(s)	70, 73
ApoI	RAATTY	2 cut(s)	294, 431
Asp700I	GAANNNNTTC	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	239
AsuNHI	GCTAGC	1 cut(s)	121
BalI	TGGCCA	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	60, 82
BccI	CCATC	1 cut(s)	246
BciVI	GTATCC	1 cut(s)	457
BclI	TGATCA	2 cut(s)	244, 375
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	2 cut(s)	122, 183
BfmI	CTRYAG	2 cut(s)	74, 320
BfuI	GTATCC	1 cut(s)	457
BisI	GCNGC	3 cut(s)	71, 74, 219
BlsI	GCNGC	3 cut(s)	72, 75, 220
BmiI	GGNNCC	1 cut(s)	442
BmsI	GCATC	1 cut(s)	10
BmtI	GCTAGC	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	219, 436
BsaWI	WCCGGW	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse118I	RCCGGY	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	96
BseAI	TCCGGA	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	219, 436
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	2 cut(s)	150, 351
BseRI	GAGGAG	1 cut(s)	113
BseX3I	CGGCCG	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	60, 82
Bsh1236I	CGCG	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	3 cut(s)	218, 313, 388
BsiEI	CGRYCG	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	215, 291
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	289
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	3 cut(s)	218, 313, 388
Bso31I	GGTCTC	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp13I	TCCGGA	1 cut(s)	290
Bsp143I	GATC	4 cut(s)	244, 253, 278, 375
BspACI	CCGC	3 cut(s)	219, 221, 368
BspANI	GGCC	3 cut(s)	218, 313, 388
BspCNI	CTCAG	2 cut(s)	149, 352
BspEI	TCCGGA	1 cut(s)	290
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	442
BspMAI	CTGCAG	2 cut(s)	78, 324
BspOI	GCTAGC	1 cut(s)	125
BspPI	GGATC	1 cut(s)	286
BspTNI	GGTCTC	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	219, 436
BssMI	GATC	4 cut(s)	244, 253, 278, 375
BssT1I	CCWWGG	1 cut(s)	436
Bst4CI	ACNGT	3 cut(s)	28, 202, 348
Bst6I	CTCTTC	1 cut(s)	477
BstC8I	GCNNGC	4 cut(s)	123, 216, 315, 329
BstDEI	CTNAG	2 cut(s)	136, 360
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	238
BstFNI	CGCG	1 cut(s)	221
BstKTI	GATC	4 cut(s)	247, 256, 281, 378
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	4 cut(s)	244, 253, 278, 375
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	3 cut(s)	211, 319, 328
BstSFI	CTRYAG	2 cut(s)	74, 320
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	60, 82
BstZI	CGGCCG	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	457
BsuRI	GGCC	3 cut(s)	218, 313, 388
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	238
BtsI	GCAGTG	1 cut(s)	317
BtsIMutI	CAGTG	2 cut(s)	317, 357
Cac8I	GCNNGC	4 cut(s)	123, 216, 315, 329
Cfr10I	RCCGGY	1 cut(s)	214
Cfr42I	CCGCGG	1 cut(s)	222
CviAII	CATG	5 cut(s)	17, 251, 269, 275, 332
CviJI	RGCY	9 cut(s)	15, 47, 73, 125, 214, 218, 265, 313, 388
CviKI_1	RGCY	9 cut(s)	15, 47, 73, 125, 214, 218, 265, 313, 388
DdeI	CTNAG	2 cut(s)	136, 360
DpnI	GATC	4 cut(s)	246, 255, 280, 377
DpnII	GATC	4 cut(s)	244, 253, 278, 375
EaeI	YGGCCR	2 cut(s)	216, 311
EagI	CGGCCG	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
EclXI	CGGCCG	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	436
Eco31I	GGTCTC	1 cut(s)	356
Eco52I	CGGCCG	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	5 cut(s)	20, 254, 272, 278, 335
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	5 cut(s)	16, 250, 268, 274, 331
FauI	CCCGC	1 cut(s)	375
FbaI	TGATCA	2 cut(s)	244, 375
Fnu4HI	GCNGC	3 cut(s)	71, 74, 219
FokI	GGATG	1 cut(s)	225
Fsp4HI	GCNGC	3 cut(s)	71, 74, 219
FspBI	CTAG	2 cut(s)	122, 183
GluI	GCNGC	3 cut(s)	71, 74, 219
HaeIII	GGCC	3 cut(s)	218, 313, 388
HapII	CCGG	2 cut(s)	215, 291
Hin1II	CATG	5 cut(s)	20, 254, 272, 278, 335
HinfI	GANTC	3 cut(s)	134, 287, 452
HpaII	CCGG	2 cut(s)	215, 291
HphI	GGTGA	1 cut(s)	239
Hpy188I	TCNGA	4 cut(s)	139, 286, 445, 457
Hpy188III	TCNNGA	2 cut(s)	242, 291
HpyAV	CCTTC	3 cut(s)	79, 399, 417
HpyCH4III	ACNGT	3 cut(s)	28, 202, 348
HpyCH4V	TGCA	4 cut(s)	55, 76, 205, 322
HpyF10VI	GCNNNNNNNGC	3 cut(s)	211, 319, 328
HpyF3I	CTNAG	2 cut(s)	136, 360
Hsp92II	CATG	5 cut(s)	20, 254, 272, 278, 335
Kpn2I	TCCGGA	1 cut(s)	290
KroI	GCCGGC	1 cut(s)	214
KroNI	GCCGGC	1 cut(s)	216
Ksp22I	TGATCA	2 cut(s)	244, 375
KspI	CCGCGG	1 cut(s)	222
Kzo9I	GATC	4 cut(s)	244, 253, 278, 375
LmnI	GCTCC	1 cut(s)	354
LpnPI	CCDG	6 cut(s)	41, 228, 255, 304, 320, 327
Lsp1109I	GCAGC	2 cut(s)	60, 82
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	2 cut(s)	122, 183
MaeIII	GTNAC	2 cut(s)	131, 394
MalI	GATC	4 cut(s)	246, 255, 280, 377
MboI	GATC	4 cut(s)	244, 253, 278, 375
MboII	GAAGA	2 cut(s)	184, 464
MhlI	GDGCHC	1 cut(s)	359
MlsI	TGGCCA	1 cut(s)	313
MluCI	AATT	2 cut(s)	294, 431
MluNI	TGGCCA	1 cut(s)	313
MlyI	GAGTC	2 cut(s)	128, 446
MnlI	CCTC	4 cut(s)	49, 91, 276, 328
Mox20I	TGGCCA	1 cut(s)	313
MroI	TCCGGA	1 cut(s)	290
MroNI	GCCGGC	1 cut(s)	214
MroXI	GAANNNNTTC	1 cut(s)	63
MscI	TGGCCA	1 cut(s)	313
MslI	CAYNNNNRTG	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	313
MspA1I	CMGCKG	3 cut(s)	73, 221, 370
MspI	CCGG	2 cut(s)	215, 291
Mva1269I	GAATGC	1 cut(s)	123
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	3 cut(s)	211, 319, 328
NaeI	GCCGGC	1 cut(s)	216
NdeII	GATC	4 cut(s)	244, 253, 278, 375
NgoMIV	GCCGGC	1 cut(s)	214
NheI	GCTAGC	1 cut(s)	121
NlaIII	CATG	5 cut(s)	20, 254, 272, 278, 335
NlaIV	GGNNCC	1 cut(s)	442
NmuCI	GTSAC	2 cut(s)	131, 394
PctI	GAATGC	1 cut(s)	123
PdiI	GCCGGC	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	72, 75, 220
PleI	GAGTC	2 cut(s)	128, 446
PpsI	GAGTC	2 cut(s)	128, 446
PspN4I	GGNNCC	1 cut(s)	442
PstI	CTGCAG	2 cut(s)	78, 324
PvuII	CAGCTG	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	273
SacII	CCGCGG	1 cut(s)	222
SatI	GCNGC	3 cut(s)	71, 74, 219
Sau3AI	GATC	4 cut(s)	244, 253, 278, 375
SchI	GAGTC	2 cut(s)	128, 446
SduI	GDGCHC	1 cut(s)	359
SetI	ASST	7 cut(s)	49, 65, 75, 127, 230, 384, 442
SfaNI	GCATC	1 cut(s)	10
SfcI	CTRYAG	2 cut(s)	74, 320
Sfr303I	CCGCGG	1 cut(s)	222
SgrBI	CCGCGG	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	2 cut(s)	294, 431
SsiI	CCGC	3 cut(s)	219, 221, 368
SspMI	CTAG	2 cut(s)	122, 183
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	3 cut(s)	28, 202, 348
TasI	AATT	2 cut(s)	294, 431
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	1 cut(s)	287
TscAI	CASTG	2 cut(s)	324, 364
TseFI	GTSAC	2 cut(s)	131, 394
TseI	GCWGC	2 cut(s)	70, 73
Tsp45I	GTSAC	2 cut(s)	131, 394
TspDTI	ATGAA	4 cut(s)	23, 185, 191, 464
TspRI	CASTG	2 cut(s)	324, 364
XapI	RAATTY	2 cut(s)	294, 431
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	2 cut(s)	122, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.