Rmu_co8292539.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8292539.1
OG0009663
Physical Location & Seq
Reverse (-)
108 .. 590
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8292539.1_g000001.1.cds

Sequence Viewer

Length: 483 bp
atgggtagggatattagcaacgacggcatagtagtcgttcgttcctccattgctctattacaggagagattcagaaagttgcagagagtgaaggtaatgagagaacagagagaggttttgagaaggcttgctctctctgagccaaaccactccatgaactacgagccggaagtggcaaggttgcttttccatcctaatgctcatgatcatcatgtccagcttgctcatggtcatgggtcttcctcatcatcttcactgtccctgtggccaacattgcagttgcagaagagaaagcgtgaggaggagtactatacacattggaggaggaggaagatcattaatgagatcccgttgatcaacttgtggccaacggtcacagacacctcttcatcttcatcatcttccgtagaaacttgttcattgaacaagttggaaacttctgagtgtgactttgattatgtagatacttctctgcatctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.59

Weight (kDa)

7.9

Isoelectric Point (pI)

63.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 340
AcoI YGGCCR 2 cut(s) 266, 365
AfaI GTAC 1 cut(s) 308
AgsI TTSAA 1 cut(s) 424
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
AlwI GGATC 1 cut(s) 340
AoxI GGCC 2 cut(s) 266, 365
AseI ATTAAT 1 cut(s) 339
BalI TGGCCA 2 cut(s) 268, 367
BbsI GAAGAC 1 cut(s) 231
BccI CCATC 1 cut(s) 198
BceAI ACGGC 1 cut(s) 40
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BclI TGATCA 2 cut(s) 205, 354
BmcAI AGTACT 1 cut(s) 308
BpiI GAAGAC 1 cut(s) 231
Bse3DI GCAATG 2 cut(s) 48, 272
BseGI GGATG 1 cut(s) 190
BseMI GCAATG 2 cut(s) 48, 272
BseMII CTCAG 2 cut(s) 129, 432
BseRI GAGGAG 4 cut(s) 314, 317, 337, 340
BshFI GGCC 2 cut(s) 268, 367
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 2 cut(s) 268, 367
Bsp143I GATC 4 cut(s) 205, 333, 345, 354
BspANI GGCC 2 cut(s) 268, 367
BspCNI CTCAG 2 cut(s) 130, 433
BspHI TCATGA 1 cut(s) 202
BspPI GGATC 1 cut(s) 340
BsrDI GCAATG 2 cut(s) 48, 272
BssMI GATC 4 cut(s) 205, 333, 345, 354
Bst4CI ACNGT 2 cut(s) 258, 373
Bst6I CTCTTC 2 cut(s) 281, 391
BstC8I GCNNGC 2 cut(s) 129, 222
BstDEI CTNAG 2 cut(s) 138, 441
BstF5I GGATG 1 cut(s) 190
BstKTI GATC 4 cut(s) 208, 336, 348, 357
BstMBI GATC 4 cut(s) 205, 333, 345, 354
BstMWI GCNNNNNNNGC 2 cut(s) 24, 274
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
BsuRI GGCC 2 cut(s) 268, 367
BtsCI GGATG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 254
Cac8I GCNNGC 2 cut(s) 129, 222
CciI TCATGA 1 cut(s) 202
Csp6I GTAC 1 cut(s) 307
CviAII CATG 5 cut(s) 154, 203, 212, 227, 233
CviJI RGCY 6 cut(s) 127, 142, 166, 220, 268, 367
CviKI_1 RGCY 6 cut(s) 127, 142, 166, 220, 268, 367
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 2 cut(s) 138, 441
DpnI GATC 4 cut(s) 207, 335, 347, 356
DpnII GATC 4 cut(s) 205, 333, 345, 354
EaeI YGGCCR 2 cut(s) 266, 365
Eam1104I CTCTTC 2 cut(s) 281, 391
EarI CTCTTC 2 cut(s) 281, 391
FaeI CATG 5 cut(s) 157, 206, 215, 230, 236
FaiI YATR 8 cut(s) 29, 155, 204, 213, 228, 234, 312, 459
FaqI GGGAC 1 cut(s) 244
FatI CATG 5 cut(s) 153, 202, 211, 226, 232
FbaI TGATCA 2 cut(s) 205, 354
FokI GGATG 1 cut(s) 177
HaeIII GGCC 2 cut(s) 268, 367
HapII CCGG 1 cut(s) 167
Hin1II CATG 5 cut(s) 157, 206, 215, 230, 236
HinfI GANTC 1 cut(s) 69
HpaII CCGG 1 cut(s) 167
Hpy188I TCNGA 3 cut(s) 74, 139, 442
Hpy188III TCNNGA 1 cut(s) 203
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 2 cut(s) 85, 117
HpyCH4III ACNGT 2 cut(s) 258, 373
HpyCH4V TGCA 4 cut(s) 82, 277, 283, 475
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 274
HpyF3I CTNAG 2 cut(s) 138, 441
Hsp92II CATG 5 cut(s) 157, 206, 215, 230, 236
Ksp22I TGATCA 2 cut(s) 205, 354
Kzo9I GATC 4 cut(s) 205, 333, 345, 354
LpnPI CCDG 4 cut(s) 47, 180, 230, 275
MaeIII GTNAC 2 cut(s) 373, 446
MalI GATC 4 cut(s) 207, 335, 347, 356
MboI GATC 4 cut(s) 205, 333, 345, 354
MboII GAAGA 7 cut(s) 231, 243, 298, 343, 378, 384, 393
MflI RGATCY 1 cut(s) 345
MlsI TGGCCA 2 cut(s) 268, 367
MluNI TGGCCA 2 cut(s) 268, 367
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 9 cut(s) 55, 106, 253, 292, 295, 315, 318, 321, 394
Mox20I TGGCCA 2 cut(s) 268, 367
MscI TGGCCA 2 cut(s) 268, 367
MseI TTAA 2 cut(s) 339, 481
MslI CAYNNNNRTG 2 cut(s) 195, 231
Msp20I TGGCCA 2 cut(s) 268, 367
MspI CCGG 1 cut(s) 167
MwoI GCNNNNNNNGC 2 cut(s) 24, 274
NdeII GATC 4 cut(s) 205, 333, 345, 354
NlaIII CATG 5 cut(s) 157, 206, 215, 230, 236
NmuCI GTSAC 2 cut(s) 373, 446
PagI TCATGA 1 cut(s) 202
PfeI GAWTC 1 cut(s) 69
PshBI ATTAAT 1 cut(s) 339
PsuI RGATCY 1 cut(s) 345
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
RseI CAYNNNNRTG 2 cut(s) 195, 231
SaqAI TTAA 2 cut(s) 339, 481
Sau3AI GATC 4 cut(s) 205, 333, 345, 354
ScaI AGTACT 1 cut(s) 308
SetI ASST 5 cut(s) 96, 117, 182, 222, 386
SmiMI CAYNNNNRTG 2 cut(s) 195, 231
TaaI ACNGT 2 cut(s) 258, 373
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 1 cut(s) 69
Tru1I TTAA 2 cut(s) 339, 481
Tru9I TTAA 2 cut(s) 339, 481
TscAI CASTG 1 cut(s) 261
TseFI GTSAC 2 cut(s) 373, 446
Tsp45I GTSAC 2 cut(s) 373, 446
TspDTI ATGAA 4 cut(s) 170, 378, 384, 408
TspGWI ACGGA 1 cut(s) 394
TspRI CASTG 1 cut(s) 261
VspI ATTAAT 1 cut(s) 339
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
ZrmI AGTACT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.