FvH4_3g00610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009663
Physical Location & Seq
Reverse (-)
305439 .. 305924
486 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00610.t1

Sequence Viewer

Length: 486 bp
ATGGGTAGGGATATTAGAAACGACGTCGACGGCACAGTAGTCGTACGTTCATCCATTGCTCTATTACAGGAGAGGTTCAGAGAGTTGCAGAGAGTGAAGGTAATGAGACAACAGAAAGAGGCTTTGAGAAAGCTTGCTCTATCTGGGCCAAACTACGAGCCCGAAGCAGCAAGGTTGCCTTTCCATCCTAATGCTGATGATCATCATGTCCAGCTTTCTCATGGTCATGGATCTCCCTCACCATCTTCAGTACTGTCCCTGTGGCCAACATTGCAGTTGCAGAAGAGAAAGCGTGATGAGGAGGAGTACTATATACATAGGAGGAGGAGGAAGATCATTAATGAGAGCCCGCTGCTGATCAACTTGTGGCCAAAGGTCACAGACACCCCTTCATCTTCATCATCTTCGGTAGAAACTTGTTCATCGAACAAGTTGGAAATTTCTGAGTGTGAATCTGATGATGTTGATACTTCTCTGCACCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.42

Weight (kDa)

7.06

Isoelectric Point (pI)

74.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 27
AccI GTMKAC 1 cut(s) 27
AciI CCGC 1 cut(s) 350
AclWI GGATC 1 cut(s) 238
AcoI YGGCCR 2 cut(s) 263, 368
AcsI RAATTY 1 cut(s) 438
AcuI CTGAAG 1 cut(s) 231
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 3 cut(s) 45, 252, 308
AluBI AGCT 2 cut(s) 133, 214
AluI AGCT 2 cut(s) 133, 214
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 1 cut(s) 238
AoxI GGCC 3 cut(s) 146, 263, 368
ApeKI GCWGC 2 cut(s) 167, 352
ApoI RAATTY 1 cut(s) 438
AseI ATTAAT 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 231
BalI TGGCCA 2 cut(s) 265, 370
BanII GRGCYC 2 cut(s) 162, 350
BbvI GCAGC 2 cut(s) 179, 339
BccI CCATC 2 cut(s) 192, 250
BceAI ACGGC 1 cut(s) 46
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BclI TGATCA 2 cut(s) 199, 357
BcoDI GTCTC 1 cut(s) 100
BisI GCNGC 2 cut(s) 168, 353
BlsI GCNGC 2 cut(s) 169, 354
BmcAI AGTACT 2 cut(s) 252, 308
BmgT120I GGNCC 1 cut(s) 146
BsaBI GATNNNNATC 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 24
Bse3DI GCAATG 2 cut(s) 54, 269
Bse8I GATNNNNATC 1 cut(s) 201
BseGI GGATG 2 cut(s) 50, 184
BseJI GATNNNNATC 1 cut(s) 201
BseMI GCAATG 2 cut(s) 54, 269
BseMII CTCAG 1 cut(s) 435
BseRI GAGGAG 4 cut(s) 314, 317, 337, 340
BseXI GCAGC 2 cut(s) 179, 339
BsgI GTGCAG 1 cut(s) 461
BshFI GGCC 3 cut(s) 148, 265, 370
BsiWI CGTACG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 241
BsnI GGCC 3 cut(s) 148, 265, 370
Bsp1286I GDGCHC 2 cut(s) 162, 350
Bsp143I GATC 4 cut(s) 199, 230, 333, 357
BspACI CCGC 1 cut(s) 350
BspANI GGCC 3 cut(s) 148, 265, 370
BspCNI CTCAG 1 cut(s) 436
BspPI GGATC 1 cut(s) 238
BsrDI GCAATG 2 cut(s) 54, 269
BssMI GATC 4 cut(s) 199, 230, 333, 357
BssNI GRCGYC 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 37, 255
Bst6I CTCTTC 1 cut(s) 278
BstACI GRCGYC 1 cut(s) 24
BstC8I GCNNGC 2 cut(s) 135, 350
BstDEI CTNAG 1 cut(s) 444
BstF5I GGATG 2 cut(s) 50, 184
BstKTI GATC 4 cut(s) 202, 233, 336, 360
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 4 cut(s) 199, 230, 333, 357
BstMWI GCNNNNNNNGC 1 cut(s) 271
BstV1I GCAGC 2 cut(s) 179, 339
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
BsuRI GGCC 3 cut(s) 148, 265, 370
BtsCI GGATG 2 cut(s) 50, 184
Cac8I GCNNGC 2 cut(s) 135, 350
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 3 cut(s) 44, 251, 307
CviAII CATG 3 cut(s) 206, 221, 227
CviJI RGCY 8 cut(s) 122, 133, 148, 160, 214, 265, 348, 370
CviKI_1 RGCY 8 cut(s) 122, 133, 148, 160, 214, 265, 348, 370
CviQI GTAC 3 cut(s) 44, 251, 307
DdeI CTNAG 1 cut(s) 444
DpnI GATC 4 cut(s) 201, 232, 335, 359
DpnII GATC 4 cut(s) 199, 230, 333, 357
EaeI YGGCCR 2 cut(s) 263, 368
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Eco24I GRGCYC 2 cut(s) 162, 350
Eco57I CTGAAG 1 cut(s) 231
EcoT38I GRGCYC 2 cut(s) 162, 350
FaeI CATG 3 cut(s) 209, 224, 230
FaiI YATR 6 cut(s) 207, 222, 228, 312, 314, 318
FalI AAGNNNNNCTT 2 cut(s) 163, 195
FaqI GGGAC 1 cut(s) 241
FatI CATG 3 cut(s) 205, 220, 226
FauI CCCGC 1 cut(s) 357
FbaI TGATCA 2 cut(s) 199, 357
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 168, 353
FokI GGATG 2 cut(s) 37, 171
FriOI GRGCYC 2 cut(s) 162, 350
Fsp4HI GCNGC 2 cut(s) 168, 353
GluI GCNGC 2 cut(s) 168, 353
HaeIII GGCC 3 cut(s) 148, 265, 370
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 3 cut(s) 209, 224, 230
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 1 cut(s) 452
HphI GGTGA 1 cut(s) 231
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 3 cut(s) 80, 445, 457
Hpy8I GTNNAC 1 cut(s) 28
Hpy99I CGWCG 3 cut(s) 26, 29, 32
HpyAV CCTTC 2 cut(s) 91, 399
HpyCH4III ACNGT 2 cut(s) 37, 255
HpyCH4IV ACGT 2 cut(s) 24, 46
HpyCH4V TGCA 4 cut(s) 88, 274, 280, 478
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
HpyF3I CTNAG 1 cut(s) 444
HpySE526I ACGT 2 cut(s) 24, 46
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 3 cut(s) 209, 224, 230
Ksp22I TGATCA 2 cut(s) 199, 357
Kzo9I GATC 4 cut(s) 199, 230, 333, 357
LpnPI CCDG 4 cut(s) 53, 129, 224, 272
Lsp1109I GCAGC 2 cut(s) 179, 339
MaeII ACGT 2 cut(s) 24, 46
MaeIII GTNAC 1 cut(s) 376
MalI GATC 4 cut(s) 201, 232, 335, 359
MboI GATC 4 cut(s) 199, 230, 333, 357
MboII GAAGA 5 cut(s) 237, 295, 343, 387, 396
MflI RGATCY 1 cut(s) 230
MhlI GDGCHC 2 cut(s) 162, 350
MlsI TGGCCA 2 cut(s) 265, 370
MluCI AATT 1 cut(s) 438
MluNI TGGCCA 2 cut(s) 265, 370
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 8 cut(s) 66, 112, 247, 292, 295, 315, 318, 321
Mox20I TGGCCA 2 cut(s) 265, 370
MscI TGGCCA 2 cut(s) 265, 370
MseI TTAA 2 cut(s) 339, 484
MslI CAYNNNNRTG 2 cut(s) 189, 225
Msp20I TGGCCA 2 cut(s) 265, 370
MspA1I CMGCKG 1 cut(s) 352
MwoI GCNNNNNNNGC 1 cut(s) 271
NdeII GATC 4 cut(s) 199, 230, 333, 357
NlaIII CATG 3 cut(s) 209, 224, 230
NmuCI GTSAC 1 cut(s) 376
PfeI GAWTC 1 cut(s) 452
Pfl23II CGTACG 1 cut(s) 43
PkrI GCNGC 2 cut(s) 169, 354
PshBI ATTAAT 1 cut(s) 339
PspLI CGTACG 1 cut(s) 43
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 1 cut(s) 230
RsaI GTAC 3 cut(s) 45, 252, 308
RsaNI GTAC 3 cut(s) 44, 251, 307
RseI CAYNNNNRTG 2 cut(s) 189, 225
SalI GTCGAC 1 cut(s) 26
SaqAI TTAA 2 cut(s) 339, 484
SatI GCNGC 2 cut(s) 168, 353
Sau3AI GATC 4 cut(s) 199, 230, 333, 357
Sau96I GGNCC 1 cut(s) 146
ScaI AGTACT 2 cut(s) 252, 308
SduI GDGCHC 2 cut(s) 162, 350
SetI ASST 9 cut(s) 27, 49, 77, 102, 135, 176, 216, 378, 483
SgrDI CGTCGACG 1 cut(s) 26
SmiMI CAYNNNNRTG 2 cut(s) 189, 225
Sse9I AATT 1 cut(s) 438
SsiI CCGC 1 cut(s) 350
TaaI ACNGT 2 cut(s) 37, 255
TaiI ACGT 2 cut(s) 27, 49
TaqI TCGA 2 cut(s) 27, 425
TasI AATT 1 cut(s) 438
TatI WGTACW 2 cut(s) 250, 306
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 2 cut(s) 339, 484
Tru9I TTAA 2 cut(s) 339, 484
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 2 cut(s) 167, 352
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 4 cut(s) 39, 381, 387, 411
VspI ATTAAT 1 cut(s) 339
XapI RAATTY 1 cut(s) 438
XcmI CCANNNNNNNNNTGG 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 27
ZraI GACGTC 1 cut(s) 25
ZrmI AGTACT 2 cut(s) 252, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.