Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009663

Physical Location & Seq

Genomic Coordinates Reverse (-)

303244 .. 303720

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGACAGGGAAAGCCATCGTGACACTGGTGACATCAATTCCTCCATTGCTCTATTGCAAGAAAGGTTCAAACAGCTGCAGAGAGTGAAGGCGATGAGAGCACAGAGAGAGGTATTGACGGTGCTTCCTCTCTCAGTACCAACCCCTTTCACCAAGAAGAGCATGGATCCCGATATGGGTTACCAGGAGCCAGCAAGTTTGTTTTTCCACCCTCAGCCTGAGCTTGTCCCTGCCCATGGCCATGGTTTTCGATCGCCGTATTCCAAAGTTTCTCTCTCTCTTTCTTTATGGCCAACTTTGAAGACAGAGTATGAGGAGGAGGACTATTTACATATAGGAACCGAATCCCAGCTGTTGATCAACTTGTGGCCAACAGTCACAAGCAGTCCTTCATCAAACAGTACTAGTTCGAACAATTTTGAAGATTTGGGTACTGATTGTGACTCCGACGATGTAGATACTTCTCTTCATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.81

Weight (kDa)

4.89

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009663)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00600 FvH4_3g00610
prunus_persica	Prupe.4G007200_v2.0.a1
pyrus_communis	pycom05g32580
rosa_chinensis	RchiOBHm_Chr5g0000811 RchiOBHm_Chr5g0000821
rosa_laevigata	RLG00000030898 RLG00000030899
rosa_multiflora	Rmu_co8292539.1_g000001 Rmu_sc0000255.1_g000011 Rmu_sc0010050.1_g000002
rosa_roxburghii	Rroxscaffold_1G00075420
rosa_rugosa	Rorug04G0386900 Rorug04G0386900
rosa_samantha	Rh5AG006700 Rh5BG008700 Rh5BG008800 Rh5CG007300 Rh5CG007400 Rh5DG007300 Rh5DG007400
rosa_wichuraiana	Rw5G000690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	161, 174
AcoI	YGGCCR	3 cut(s)	238, 290, 368
AfaI	GTAC	3 cut(s)	138, 403, 433
AfiI	CCNNNNNNNGG	2 cut(s)	176, 236
AgsI	TTSAA	3 cut(s)	70, 301, 422
AhlI	ACTAGT	1 cut(s)	404
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	3 cut(s)	76, 223, 352
AluI	AGCT	3 cut(s)	76, 223, 352
Alw21I	GWGCWC	1 cut(s)	103
AlwI	GGATC	2 cut(s)	161, 174
AoxI	GGCC	3 cut(s)	238, 290, 368
ApeKI	GCWGC	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	41, 142
AsuII	TTCGAA	1 cut(s)	410
BalI	TGGCCA	3 cut(s)	240, 292, 370
BamHI	GGATCC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	103
BbvCI	CCTCAGC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	63
BccI	CCATC	1 cut(s)	24
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	185
BclI	TGATCA	1 cut(s)	357
BcuI	ACTAGT	1 cut(s)	404
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	77
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
BmcAI	AGTACT	1 cut(s)	403
Bme1390I	CCNGG	1 cut(s)	185
BmiI	GGNNCC	3 cut(s)	168, 189, 340
BmrFI	CCNGG	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	308
Bpu10I	CCTNAGC	2 cut(s)	213, 219
Bpu14I	TTCGAA	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	235, 241
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 236
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	235, 241
BseLI	CCNNNNNNNGG	2 cut(s)	176, 236
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	3 cut(s)	147, 210, 227
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	2 cut(s)	329, 332
BseXI	GCAGC	1 cut(s)	63
BseYI	CCCAGC	1 cut(s)	348
Bsh1285I	CGRYCG	1 cut(s)	254
BshFI	GGCC	3 cut(s)	240, 292, 370
BsiEI	CGRYCG	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	176, 236
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	3 cut(s)	240, 292, 370
Bsp119I	TTCGAA	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	3 cut(s)	166, 251, 357
Bsp19I	CCATGG	2 cut(s)	235, 241
BspANI	GGCC	3 cut(s)	240, 292, 370
BspCNI	CTCAG	3 cut(s)	146, 211, 226
BspLI	GGNNCC	3 cut(s)	168, 189, 340
BspMAI	CTGCAG	1 cut(s)	81
BspPI	GGATC	2 cut(s)	161, 174
BspQI	GCTCTTC	1 cut(s)	152
BspT104I	TTCGAA	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	235, 241
BssMI	GATC	3 cut(s)	166, 251, 357
BssT1I	CCWWGG	2 cut(s)	235, 241
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	3 cut(s)	121, 376, 401
Bst6I	CTCTTC	2 cut(s)	152, 471
BstBI	TTCGAA	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	3 cut(s)	133, 213, 219
BstDSI	CCRYGG	2 cut(s)	235, 241
BstEII	GGTNACC	1 cut(s)	179
BstKTI	GATC	3 cut(s)	169, 254, 360
BstMBI	GATC	3 cut(s)	166, 251, 357
BstMCI	CGRYCG	1 cut(s)	254
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	185
BstPI	GGTNACC	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	183
BstSFI	CTRYAG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	63
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	1 cut(s)	166
BstXI	CCANNNNNNTGG	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	3 cut(s)	240, 292, 370
BtgI	CCRYGG	2 cut(s)	235, 241
BtgZI	GCGATG	1 cut(s)	107
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	192
Csp6I	GTAC	3 cut(s)	137, 402, 432
CviAII	CATG	3 cut(s)	163, 236, 242
CviJI	RGCY	9 cut(s)	15, 76, 190, 217, 223, 240, 292, 352, 370
CviKI_1	RGCY	9 cut(s)	15, 76, 190, 217, 223, 240, 292, 352, 370
CviQI	GTAC	3 cut(s)	137, 402, 432
DdeI	CTNAG	3 cut(s)	133, 213, 219
DpnI	GATC	3 cut(s)	168, 253, 359
DpnII	GATC	3 cut(s)	166, 251, 357
EaeI	YGGCCR	3 cut(s)	238, 290, 368
Eam1104I	CTCTTC	2 cut(s)	152, 471
EarI	CTCTTC	2 cut(s)	152, 471
Eco130I	CCWWGG	2 cut(s)	235, 241
Eco91I	GGTNACC	1 cut(s)	179
EcoO65I	GGTNACC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	183
EcoT14I	CCWWGG	2 cut(s)	235, 241
ErhI	CCWWGG	2 cut(s)	235, 241
FaeI	CATG	3 cut(s)	166, 239, 245
FaiI	YATR	8 cut(s)	164, 176, 237, 243, 289, 312, 333, 335
FalI	AAGNNNNNCTT	2 cut(s)	373, 405
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	3 cut(s)	162, 235, 241
FbaI	TGATCA	1 cut(s)	357
Fnu4HI	GCNGC	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	1 cut(s)	405
GluI	GCNGC	1 cut(s)	77
GsaI	CCCAGC	1 cut(s)	352
HaeIII	GGCC	3 cut(s)	240, 292, 370
Hin1II	CATG	3 cut(s)	166, 239, 245
HinfI	GANTC	2 cut(s)	344, 443
HphI	GGTGA	2 cut(s)	41, 142
Hpy188I	TCNGA	1 cut(s)	448
Hpy188III	TCNNGA	2 cut(s)	20, 170
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	2 cut(s)	82, 399
HpyCH4III	ACNGT	3 cut(s)	121, 376, 401
HpyCH4V	TGCA	2 cut(s)	58, 79
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	3 cut(s)	133, 213, 219
Hsp92II	CATG	3 cut(s)	166, 239, 245
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	3 cut(s)	166, 251, 357
LguI	GCTCTTC	1 cut(s)	152
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	7 cut(s)	12, 170, 197, 204, 231, 243, 362
Lsp1109I	GCAGC	1 cut(s)	63
MaeI	CTAG	1 cut(s)	405
MaeIII	GTNAC	5 cut(s)	20, 29, 179, 376, 440
MalI	GATC	3 cut(s)	168, 253, 359
MboI	GATC	3 cut(s)	166, 251, 357
MboII	GAAGA	4 cut(s)	169, 313, 434, 458
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	103
MlsI	TGGCCA	3 cut(s)	240, 292, 370
MluCI	AATT	2 cut(s)	37, 415
MluNI	TGGCCA	3 cut(s)	240, 292, 370
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	7 cut(s)	52, 103, 138, 222, 307, 310, 313
Mox20I	TGGCCA	3 cut(s)	240, 292, 370
MscI	TGGCCA	3 cut(s)	240, 292, 370
MslI	CAYNNNNRTG	1 cut(s)	240
Msp20I	TGGCCA	3 cut(s)	240, 292, 370
MspA1I	CMGCKG	2 cut(s)	76, 352
MspR9I	CCNGG	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	98
NcoI	CCATGG	2 cut(s)	235, 241
NdeII	GATC	3 cut(s)	166, 251, 357
NlaIII	CATG	3 cut(s)	166, 239, 245
NlaIV	GGNNCC	3 cut(s)	168, 189, 340
NmuCI	GTSAC	4 cut(s)	20, 29, 376, 440
NspV	TTCGAA	1 cut(s)	410
PciSI	GCTCTTC	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	1 cut(s)	78
Ple19I	CGATCG	1 cut(s)	254
PleI	GAGTC	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	183
PspEI	GGTNACC	1 cut(s)	179
PspFI	CCCAGC	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	3 cut(s)	168, 189, 340
PstI	CTGCAG	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	166
PvuI	CGATCG	1 cut(s)	254
PvuII	CAGCTG	2 cut(s)	76, 352
RsaI	GTAC	3 cut(s)	138, 403, 433
RsaNI	GTAC	3 cut(s)	137, 402, 432
RseI	CAYNNNNRTG	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	152
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	3 cut(s)	166, 251, 357
ScaI	AGTACT	1 cut(s)	403
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	5 cut(s)	68, 78, 114, 225, 354
SfcI	CTRYAG	1 cut(s)	77
SfuI	TTCGAA	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	240
SpeI	ACTAGT	1 cut(s)	404
Sse9I	AATT	2 cut(s)	37, 415
SspMI	CTAG	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	2 cut(s)	235, 241
TaaI	ACNGT	3 cut(s)	121, 376, 401
TaqI	TCGA	2 cut(s)	250, 410
TasI	AATT	2 cut(s)	37, 415
TatI	WGTACW	1 cut(s)	401
TfiI	GAWTC	1 cut(s)	344
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	4 cut(s)	20, 29, 376, 440
TseI	GCWGC	1 cut(s)	76
Tsp45I	GTSAC	4 cut(s)	20, 29, 376, 440
TspDTI	ATGAA	2 cut(s)	381, 458
TspRI	CASTG	1 cut(s)	31
XcmI	CCANNNNNNNNNTGG	2 cut(s)	23, 160
XspI	CTAG	1 cut(s)	405
ZrmI	AGTACT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.