Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013504

Physical Location & Seq

Genomic Coordinates Forward (+)

371485 .. 376542

Gene Structure 5058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G007100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGTCAGAGAAGTTCTCGGCGACGCTTCGAATTGGAGATCTCAACGATTTCATAGCGCCATCTCAGGCTTGCATAGTCTCTCTCAAAGGACTCAAAGCCTCCTCAACCAAGCCCTCTGCTAAGCCTGAGGTTTCAACTTCTAGCAAGCAATTGAAAACAGAACCAGTTAAAATTTCACTCAAAGATTGCTTAGCATGCAGTGGGTGTGTAACATCAGCGGAGACAGTTATGCTGGAGAAGCAAAGTTTGGATGAGTTCCTTTTTAATATTGATAAGGGAAAAGCTGTCATTGTCTCCCTATCTCCTCAATCAAGAGCTTCACTTGCCGTGTATTTTGGAATTTCACCACTTCAGGTCTTTAGGAAACTCACGACTTTTTTTAAGTCATTGGGTGTAAAGGCTATATTTGATACAAGTTGCAGTAGAGATTTAACTCTTGTTGAATCTTGTAATGAGTTCATCACAAGGTACAAACAAAGCCAGTCAACAGATGATAAAAGCTGTCAATCTTCCTTGCCCATGATTTCATCAGCGTGTCCAGGTTGGATATGCTATGCTGAAAAACAACTTGGATCCTATGTTCTTCCTTATATTTCTTCAGTGAAGAGTCCCCAGCAAACAATTGGAGTTATTGTTAAAAATAATATATGCCAAAAAATGGGTCTTAGGCCGGCTGATGTGTACCATGTGACTGTGATGCCTTGTTATGATAAGAAGCTTGAGGCTTCACGTGATGACTTTGTTTTTGAAGTTGAACAATCCAAAACTAATGAGAATGAAGGTCTTAGGGTTTCAGAGGTAGATTCGGTGTTGACATCTGGGGAAGTTTTAGAACTGATACAGTTAAAAGGAGTTGATTTTAAAGGCTTAGAAGAGTCTTCTCTGGATGGCATGTTGACAAATTTTAATGAAGGGCATCTTTATGGAGTCCAGGGAAGCTCTGGGGGTTATGCAGAAACAATATTCCGTTATGCTGGTAAAGTGCTCTTTGGAAGAGAAGTCAAAGGCCCTGTTGATTTCAGAACTATTAAAAATTCAGACTTCCAGGAAGTGACTTTGGAAGTGGAAGGGAAGACTGTATTGAAATTTGCACTATGTTACGGTTTCCGGAACCTGCAAAACATTGTCAGGAAAATCAAAATTGGAAAATGTGATTATCATTTTCTAGAGATCATGGCGTGCCCTTCAGGTTGCTTGAATGGTGGAGGACAGGTTAAGCCACAGCCTGGGCAATCTGCAAAGGAGTTGATTCAGTTATTACAAACAGCCTATATGGAAAACGTTTTGATAGCAGATCCTTTTGGAAACCCTTTAGTGCAAAGCTTATACGATGAGTGGCTTGAGCATCCTGGTTCAGAGAAGGCTAAGCGACTCTTTCACACAGATTATCACCCTGTCGTGAAAAGCATAAGTTCTCAGTTACACAATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009628 GO:0016491 GO:0016651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050896 GO:0051536 GO:0051540 GO:0055114 GO:0070482

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe_hyd_SSU Fe_hyd_lg_C

Protein Analysis

478

Amino Acids

52.73

Weight (kDa)

7.01

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16440
fragaria_vesca	FvH4_3g00590
malus_domestica	MD00G1058500.v1.1 MD10G1336400.v1.1
prunus_persica	Prupe.4G007100_v2.0.a1
pyrus_communis	pycom05g32570
rosa_chinensis	RchiOBHm_Chr5g0000801
rosa_laevigata	RLG00000030897
rosa_multiflora	Rmu_sc0000255.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075430
rosa_rugosa	Rorug04G0386700 Rorug04G0386800.1 Rorug04G0386900
rosa_samantha	Rh5AG006600 Rh5BG008600 Rh5CG007200 Rh5DG007200
rosa_wichuraiana	Rw5G000680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1122
AccB7I	CCANNNNNTGG	2 cut(s)	658, 1226
AccIII	TCCGGA	1 cut(s)	1107
AciI	CCGC	1 cut(s)	218
AclI	AACGTT	1 cut(s)	1281
AclWI	GGATC	3 cut(s)	567, 580, 1289
AcsI	RAATTY	5 cut(s)	171, 339, 901, 1033, 1085
AcuI	CTGAAG	3 cut(s)	335, 582, 1170
AcvI	CACGTG	1 cut(s)	731
AfaI	GTAC	2 cut(s)	470, 683
AfiI	CCNNNNNNNGG	2 cut(s)	658, 1226
AgsI	TTSAA	7 cut(s)	135, 154, 443, 749, 755, 1084, 1198
AjnI	CCWGG	5 cut(s)	538, 930, 1044, 1225, 1348
AjuI	GAANNNNNNNTTGG	4 cut(s)	230, 262, 552, 584
AloI	GAACNNNNNNTCC	2 cut(s)	564, 596
AluBI	AGCT	6 cut(s)	284, 317, 501, 718, 939, 1323
AluI	AGCT	6 cut(s)	284, 317, 501, 718, 939, 1323
Alw21I	GWGCWC	1 cut(s)	987
Alw26I	GTCTC	3 cut(s)	82, 215, 298
AlwI	GGATC	3 cut(s)	567, 580, 1289
Aor13HI	TCCGGA	1 cut(s)	1107
AoxI	GGCC	2 cut(s)	668, 1006
ApoI	RAATTY	5 cut(s)	171, 339, 901, 1033, 1085
ArsI	GACNNNNNNTTYG	4 cut(s)	646, 678, 728, 760
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	1007
AsuHPI	GGTGA	2 cut(s)	336, 1382
AsuII	TTCGAA	1 cut(s)	28
AxyI	CCTNAGG	1 cut(s)	126
BaeGI	GKGCMC	1 cut(s)	1184
BamHI	GGATCC	1 cut(s)	572
BbrPI	CACGTG	1 cut(s)	731
BbsI	GAAGAC	2 cut(s)	870, 1079
Bbv12I	GWGCWC	1 cut(s)	987
BccI	CCATC	2 cut(s)	67, 881
BceAI	ACGGC	1 cut(s)	311
BciT130I	CCWGG	5 cut(s)	540, 932, 1046, 1227, 1350
BcoDI	GTCTC	3 cut(s)	82, 215, 298
BfaI	CTAG	2 cut(s)	141, 1166
BfoI	RGCGCY	1 cut(s)	59
BfuAI	ACCTGC	1 cut(s)	1122
BglII	AGATCT	1 cut(s)	37
BlpI	GCTNAGC	3 cut(s)	120, 190, 1365
Bme1390I	CCNGG	5 cut(s)	540, 932, 1046, 1227, 1350
BmgT120I	GGNCC	1 cut(s)	1007
BmiI	GGNNCC	2 cut(s)	574, 1112
BmrFI	CCNGG	5 cut(s)	540, 932, 1046, 1227, 1350
BmsI	GCATC	3 cut(s)	687, 925, 1354
BpiI	GAAGAC	2 cut(s)	870, 1079
BplI	GAGNNNNNCTC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	254
Bpu1102I	GCTNAGC	3 cut(s)	120, 190, 1365
Bpu14I	TTCGAA	1 cut(s)	28
BpuEI	CTTGAG	2 cut(s)	740, 1361
BsaAI	YACGTR	1 cut(s)	731
BsaJI	CCNNGG	2 cut(s)	931, 1226
BsaWI	WCCGGW	1 cut(s)	1107
BsaXI	ACNNNNNCTCC	4 cut(s)	618, 648, 1197, 1227
Bsc4I	CCNNNNNNNGG	2 cut(s)	658, 1226
Bse118I	RCCGGY	1 cut(s)	670
Bse1I	ACTGG	2 cut(s)	164, 481
Bse21I	CCTNAGG	1 cut(s)	126
BseAI	TCCGGA	1 cut(s)	1107
BseBI	CCWGG	5 cut(s)	540, 932, 1046, 1227, 1350
BseDI	CCNNGG	2 cut(s)	931, 1226
BseGI	GGATG	3 cut(s)	256, 892, 1345
BseLI	CCNNNNNNNGG	2 cut(s)	658, 1226
BseMII	CTCAG	3 cut(s)	77, 117, 1430
BseNI	ACTGG	2 cut(s)	164, 481
BseRI	GAGGAG	2 cut(s)	91, 294
BseSI	GKGCMC	1 cut(s)	1184
BseYI	CCCAGC	1 cut(s)	612
BshFI	GGCC	2 cut(s)	670, 1008
BsiHKAI	GWGCWC	1 cut(s)	987
BsiSI	CCGG	2 cut(s)	671, 1108
BslFI	GGGAC	1 cut(s)	594
BslI	CCNNNNNNNGG	2 cut(s)	658, 1226
BsmAI	GTCTC	3 cut(s)	82, 215, 298
BsmFI	GGGAC	1 cut(s)	594
BsnI	GGCC	2 cut(s)	670, 1008
Bsp119I	TTCGAA	1 cut(s)	28
Bsp1286I	GDGCHC	2 cut(s)	987, 1184
Bsp13I	TCCGGA	1 cut(s)	1107
Bsp143I	GATC	4 cut(s)	37, 572, 1170, 1294
Bsp1720I	GCTNAGC	3 cut(s)	120, 190, 1365
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	2 cut(s)	670, 1008
BspCNI	CTCAG	3 cut(s)	76, 118, 1429
BspEI	TCCGGA	1 cut(s)	1107
BspLI	GGNNCC	2 cut(s)	574, 1112
BspMI	ACCTGC	1 cut(s)	1122
BspPI	GGATC	3 cut(s)	567, 580, 1289
BspT104I	TTCGAA	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	670
BsrI	ACTGG	2 cut(s)	164, 481
BssAI	RCCGGY	1 cut(s)	670
BssECI	CCNNGG	2 cut(s)	931, 1226
BssMI	GATC	4 cut(s)	37, 572, 1170, 1294
Bst2UI	CCWGG	5 cut(s)	540, 932, 1046, 1227, 1350
Bst4CI	ACNGT	5 cut(s)	226, 694, 843, 1078, 1103
Bst6I	CTCTTC	3 cut(s)	599, 867, 988
BstBAI	YACGTR	1 cut(s)	731
BstBI	TTCGAA	1 cut(s)	28
BstC8I	GCNNGC	5 cut(s)	70, 146, 196, 672, 1180
BstDEI	CTNAG	9 cut(s)	63, 120, 126, 190, 665, 785, 868, 1365, 1416
BstF5I	GGATG	3 cut(s)	256, 892, 1345
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	4 cut(s)	40, 575, 1173, 1297
BstMAI	GTCTC	3 cut(s)	82, 215, 298
BstMBI	GATC	4 cut(s)	37, 572, 1170, 1294
BstMWI	GCNNNNNNNGC	3 cut(s)	195, 238, 323
BstNI	CCWGG	5 cut(s)	540, 932, 1046, 1227, 1350
BstNSI	RCATGY	2 cut(s)	198, 895
BstSCI	CCNGG	5 cut(s)	538, 930, 1044, 1225, 1348
BstSLI	GKGCMC	1 cut(s)	1184
BstV2I	GAAGAC	2 cut(s)	870, 1079
BstX2I	RGATCY	3 cut(s)	37, 572, 1294
BstYI	RGATCY	3 cut(s)	37, 572, 1294
Bsu36I	CCTNAGG	1 cut(s)	126
BsuRI	GGCC	2 cut(s)	670, 1008
BtsCI	GGATG	3 cut(s)	256, 892, 1345
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	205, 606
BveI	ACCTGC	1 cut(s)	1122
Cac8I	GCNNGC	5 cut(s)	70, 146, 196, 672, 1180
CfoI	GCGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	670
Cfr13I	GGNCC	1 cut(s)	1007
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	469, 682
CviAII	CATG	5 cut(s)	195, 520, 686, 892, 1174
CviQI	GTAC	2 cut(s)	469, 682
DdeI	CTNAG	9 cut(s)	63, 120, 126, 190, 665, 785, 868, 1365, 1416
DpnI	GATC	4 cut(s)	39, 574, 1172, 1296
DpnII	GATC	4 cut(s)	37, 572, 1170, 1294
DraI	TTTAAA	1 cut(s)	862
Eam1104I	CTCTTC	3 cut(s)	599, 867, 988
EarI	CTCTTC	3 cut(s)	599, 867, 988
Eco57I	CTGAAG	3 cut(s)	335, 582, 1170
Eco72I	CACGTG	1 cut(s)	731
Eco81I	CCTNAGG	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	1007
EcoRII	CCWGG	5 cut(s)	538, 930, 1044, 1225, 1348
FaeI	CATG	5 cut(s)	198, 523, 689, 895, 1177
FalI	AAGNNNNNCTT	4 cut(s)	903, 935, 1358, 1390
FaqI	GGGAC	1 cut(s)	594
FatI	CATG	5 cut(s)	194, 519, 685, 891, 1173
FokI	GGATG	3 cut(s)	263, 899, 1332
FspBI	CTAG	2 cut(s)	141, 1166
GlaI	GCGC	1 cut(s)	57
GsaI	CCCAGC	1 cut(s)	616
GsuI	CTGGAG	1 cut(s)	254
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	670, 1008
HapII	CCGG	2 cut(s)	671, 1108
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	5 cut(s)	198, 523, 689, 895, 1177
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HincII	GTYRAC	3 cut(s)	486, 813, 897
HindII	GTYRAC	3 cut(s)	486, 813, 897
HindIII	AAGCTT	2 cut(s)	716, 1321
HinfI	GANTC	8 cut(s)	90, 443, 607, 803, 875, 927, 1249, 1371
HpaII	CCGG	2 cut(s)	671, 1108
HphI	GGTGA	2 cut(s)	336, 1382
Hpy166II	GTNNAC	4 cut(s)	486, 682, 813, 897
Hpy188I	TCNGA	5 cut(s)	7, 796, 1022, 1039, 1357
Hpy188III	TCNNGA	7 cut(s)	312, 370, 884, 1108, 1129, 1166, 1399
Hpy8I	GTNNAC	4 cut(s)	486, 682, 813, 897
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	5 cut(s)	773, 905, 1061, 1194, 1354
HpyCH4III	ACNGT	5 cut(s)	226, 694, 843, 1078, 1103
HpyCH4IV	ACGT	2 cut(s)	730, 1281
HpyCH4V	TGCA	8 cut(s)	72, 198, 420, 953, 1091, 1117, 1238, 1318
HpyF10VI	GCNNNNNNNGC	3 cut(s)	195, 238, 323
HpyF3I	CTNAG	9 cut(s)	63, 120, 126, 190, 665, 785, 868, 1365, 1416
HpySE526I	ACGT	2 cut(s)	730, 1281
Hsp92II	CATG	5 cut(s)	198, 523, 689, 895, 1177
HspAI	GCGC	1 cut(s)	56
Kpn2I	TCCGGA	1 cut(s)	1107
KroI	GCCGGC	1 cut(s)	670
KroNI	GCCGGC	1 cut(s)	672
Kzo9I	GATC	4 cut(s)	37, 572, 1170, 1294
LweI	GCATC	3 cut(s)	687, 925, 1354
MaeI	CTAG	2 cut(s)	141, 1166
MaeII	ACGT	2 cut(s)	730, 1281
MaeIII	GTNAC	5 cut(s)	208, 688, 1051, 1097, 1419
MalI	GATC	4 cut(s)	39, 574, 1172, 1296
MboI	GATC	4 cut(s)	37, 572, 1170, 1294
MboII	GAAGA	8 cut(s)	501, 575, 588, 616, 870, 884, 1005, 1084
MfeI	CAATTG	3 cut(s)	149, 621, 1426
MflI	RGATCY	3 cut(s)	37, 572, 1294
MhlI	GDGCHC	2 cut(s)	987, 1184
MlyI	GAGTC	5 cut(s)	84, 616, 884, 936, 1365
MmeI	TCCRAC	1 cut(s)	524
MnlI	CCTC	8 cut(s)	109, 112, 121, 124, 315, 715, 790, 1199
MroI	TCCGGA	1 cut(s)	1107
MroNI	GCCGGC	1 cut(s)	670
MslI	CAYNNNNRTG	2 cut(s)	532, 921
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	2 cut(s)	671, 1108
MspR9I	CCNGG	5 cut(s)	540, 932, 1046, 1227, 1350
MunI	CAATTG	3 cut(s)	149, 621, 1426
MvaI	CCWGG	5 cut(s)	540, 932, 1046, 1227, 1350
MwoI	GCNNNNNNNGC	3 cut(s)	195, 238, 323
NaeI	GCCGGC	1 cut(s)	672
NdeII	GATC	4 cut(s)	37, 572, 1170, 1294
NgoMIV	GCCGGC	1 cut(s)	670
NlaIII	CATG	5 cut(s)	198, 523, 689, 895, 1177
NlaIV	GGNNCC	2 cut(s)	574, 1112
NmuCI	GTSAC	2 cut(s)	688, 1051
NspI	RCATGY	2 cut(s)	198, 895
NspV	TTCGAA	1 cut(s)	28
PaeI	GCATGC	1 cut(s)	198
PdiI	GCCGGC	1 cut(s)	672
PfeI	GAWTC	3 cut(s)	443, 803, 1249
PflMI	CCANNNNNTGG	2 cut(s)	658, 1226
PfoI	TCCNGGA	1 cut(s)	1044
PleI	GAGTC	5 cut(s)	84, 615, 883, 935, 1365
PmaCI	CACGTG	1 cut(s)	731
PmlI	CACGTG	1 cut(s)	731
PpsI	GAGTC	5 cut(s)	84, 615, 883, 935, 1365
Ppu21I	YACGTR	1 cut(s)	731
Psp1406I	AACGTT	1 cut(s)	1281
Psp6I	CCWGG	5 cut(s)	538, 930, 1044, 1225, 1348
PspCI	CACGTG	1 cut(s)	731
PspFI	CCCAGC	1 cut(s)	612
PspGI	CCWGG	5 cut(s)	538, 930, 1044, 1225, 1348
PspN4I	GGNNCC	2 cut(s)	574, 1112
PspPI	GGNCC	1 cut(s)	1007
PsuI	RGATCY	3 cut(s)	37, 572, 1294
RsaI	GTAC	2 cut(s)	470, 683
RsaNI	GTAC	2 cut(s)	469, 682
RseI	CAYNNNNRTG	2 cut(s)	532, 921
Sau3AI	GATC	4 cut(s)	37, 572, 1170, 1294
Sau96I	GGNCC	1 cut(s)	1007
SchI	GAGTC	5 cut(s)	84, 616, 884, 936, 1365
ScrFI	CCNGG	5 cut(s)	540, 932, 1046, 1227, 1350
SduI	GDGCHC	2 cut(s)	987, 1184
SfaNI	GCATC	3 cut(s)	687, 925, 1354
SfuI	TTCGAA	1 cut(s)	28
SmiMI	CAYNNNNRTG	2 cut(s)	532, 921
SmlI	CTYRAG	2 cut(s)	719, 1340
SmoI	CTYRAG	2 cut(s)	719, 1340
SphI	GCATGC	1 cut(s)	198
SsiI	CCGC	1 cut(s)	218
SspI	AATATT	2 cut(s)	268, 963
SspMI	CTAG	2 cut(s)	141, 1166
StyD4I	CCNGG	5 cut(s)	538, 930, 1044, 1225, 1348
TaaI	ACNGT	5 cut(s)	226, 694, 843, 1078, 1103
TaiI	ACGT	2 cut(s)	733, 1284
TaqI	TCGA	1 cut(s)	28
TfiI	GAWTC	3 cut(s)	443, 803, 1249
TscAI	CASTG	2 cut(s)	205, 606
TseFI	GTSAC	2 cut(s)	688, 1051
Tsp45I	GTSAC	2 cut(s)	688, 1051
TspDTI	ATGAA	5 cut(s)	40, 448, 516, 792, 924
TspGWI	ACGGA	1 cut(s)	956
TspRI	CASTG	2 cut(s)	205, 606
Van91I	CCANNNNNTGG	2 cut(s)	658, 1226
XapI	RAATTY	5 cut(s)	171, 339, 901, 1033, 1085
XbaI	TCTAGA	1 cut(s)	1165
XceI	RCATGY	2 cut(s)	198, 895
XcmI	CCANNNNNNNNNTGG	2 cut(s)	620, 938
XspI	CTAG	2 cut(s)	141, 1166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.