FvH4_3g00590

Belongs to the NARF family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
298336 .. 303061
4726 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00590.t1

Sequence Viewer

Length: 1419 bp
ATGTCAGAGAAGTTCTCCGCCACGCTTCGAATCGGAGACCTCAACGATTACATAGCTCCGTCTCAGGCTTGCGTAGTCTCTCTCAAATCCACCTCCACAAAGCCCTCCGATAAGTCTCAGGTTTCGACTTCCGGCAAGGTATTGCAAACCGAACCGGTTAAAATTTCACTCAAAGATTGCTTAGCATGCAGTGGGTGCATAACGTCGGCGGAGACTGTTATGCTGGAGAAGCAAAGTTTGGATGAGTTTCTTTTGAATATTGATAAAGGAAAAGCCGTCATTGTTTCCCTATCTCCCCAATCAAGAGCTTCACTTGCTGTTCATTTTGGGATTTCACAACTTCAGGTCTTTAGGAAATTGACAACTCTTTTTAAGTCCTTGGGCGTAAAGGCTATATTTGACACAAGTTGCAGTAGAGATCTAACTCTTATTGAATCTTGTAATGAATTCATCACAAGGTACAAACAGTCTACTGATGATGAAAGCCGTAAATCTTTGTTGCCCATGATTTCATCAGCATGTCCAGGTTGGATATGCTATGCTGAAAAAACACTTGGATCCTATGTACTGCCTTATATTTCTTCAGTGAAGAGTCCCCAGCAAACAATTGGAGTTATTGTTAAAAAGCATATATGCCAAAAAATGGGTCTTAGGCCAGATGATGTTTACCATGTAACAGTGATGCCTTGTTATGACAAGAAGCTTGAGGCGTCACGTGATGACTTTGTATTTGAAGTTGATCGAGCCAATAGTAATGGGAATGGTAGTGTTAGCATTTCAGAGGTAGATTCAGTGTTGACAACTGGAGAAGTTTTAGATCTGATACAGTTAAAAGGCGCTGATTTTGGGGGCTTAGAAGAGTCTCCTCTAGATACCATGTTGACAAATTTTAGTGACGGACATCTTTACGGAGTCCACGGAAGCTCAGGGGGATATGCAGAAACAATTTTCCAATATGCTGCTAAAGTAATCTTTGGAAGAGAAATTGAAGGCCCTGTGGACTTCAGGACTATAAAAAATTCAGACTTTCAAGAAGTAACTTTAGAGGTGGAAGGGAAGACTGTTTTGAAATTTGCACTATGTTATGGTTTTCGGAACCTGCAAAATGTTGTCAGGAAAATCAAGATTGGGAAATGTGATTATCATTTTCTAGAGATCATGGCTTGCCCTTCAGGTTGCTTGAATGGTGGAGGACAGATCAAGCCAAAACCTGGGCAATCTGCAAAGCAGTTGATTCCGTTGTTACAAGCAGCTTATGCGGACAATGTTTTGGTATCTGATCCTTTTGGAAATCCAATAGTGCGAAGCTTATATAATGAGTGGCTTGAGAAACCTGGTTCAGATAAGGCTAAGCAACTCATGCACACAGAGTACCACCCTATCGTTAAAAGCATAACTTCTCAGTTACACAATTGGTGA

Protein Analysis

473

Amino Acids

51.9

Weight (kDa)

6.75

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fe_hyd_lg_C PF02906 91 - 397 4.7e-79 Iron only hydrogenase large subunit, C-terminal domain
Fe_hyd_SSU PF02256 428 - 460 4e-10 Iron hydrogenase small subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013504)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1107
AccB7I CCANNNNNTGG 2 cut(s) 643, 1211
AccI GTMKAC 1 cut(s) 470
AciI CCGC 3 cut(s) 18, 209, 1259
AclWI GGATC 3 cut(s) 552, 565, 1274
AcsI RAATTY 5 cut(s) 162, 446, 886, 1018, 1070
AcuI CTGAAG 4 cut(s) 326, 567, 988, 1155
AcvI CACGTG 1 cut(s) 716
AcyI GRCGYC 1 cut(s) 710
AfaI GTAC 3 cut(s) 461, 567, 1373
AfiI CCNNNNNNNGG 2 cut(s) 643, 1211
AgeI ACCGGT 1 cut(s) 154
AgsI TTSAA 7 cut(s) 256, 434, 734, 989, 1031, 1069, 1183
AjnI CCWGG 3 cut(s) 523, 1210, 1333
AjuI GAANNNNNNNTTGG 4 cut(s) 221, 253, 537, 569
AluBI AGCT 6 cut(s) 56, 308, 703, 924, 1253, 1308
AluI AGCT 6 cut(s) 56, 308, 703, 924, 1253, 1308
Alw26I GTCTC 6 cut(s) 30, 66, 82, 120, 206, 867
AlwI GGATC 3 cut(s) 552, 565, 1274
AoxI GGCC 2 cut(s) 653, 991
ApeKI GCWGC 2 cut(s) 959, 1250
ApoI RAATTY 5 cut(s) 162, 446, 886, 1018, 1070
ArsI GACNNNNNNTTYG 4 cut(s) 631, 663, 713, 745
AsiGI ACCGGT 1 cut(s) 154
AspLEI GCGC 1 cut(s) 839
AspS9I GGNCC 1 cut(s) 992
AsuII TTCGAA 1 cut(s) 28
BamHI GGATCC 1 cut(s) 557
BbrPI CACGTG 1 cut(s) 716
BbsI GAAGAC 1 cut(s) 1064
BbvI GCAGC 2 cut(s) 946, 1262
BceAI ACGGC 2 cut(s) 260, 471
BciT130I CCWGG 3 cut(s) 525, 1212, 1335
BcoDI GTCTC 6 cut(s) 30, 66, 82, 120, 206, 867
BfaI CTAG 2 cut(s) 869, 1151
BfoI RGCGCY 1 cut(s) 840
BfuAI ACCTGC 1 cut(s) 1107
BglII AGATCT 2 cut(s) 418, 817
BisI GCNGC 2 cut(s) 960, 1251
BlpI GCTNAGC 2 cut(s) 181, 1350
BlsI GCNGC 2 cut(s) 961, 1252
Bme1390I CCNGG 3 cut(s) 525, 1212, 1335
BmgT120I GGNCC 1 cut(s) 992
BmiI GGNNCC 2 cut(s) 559, 1097
BmrFI CCNGG 3 cut(s) 525, 1212, 1335
BmsI GCATC 1 cut(s) 672
BpiI GAAGAC 1 cut(s) 1064
BplI GAGNNNNNCTC 1 cut(s) 31
BpmI CTGGAG 2 cut(s) 245, 825
Bpu10I CCTNAGC 1 cut(s) 925
Bpu1102I GCTNAGC 2 cut(s) 181, 1350
Bpu14I TTCGAA 1 cut(s) 28
BpuEI CTTGAG 2 cut(s) 725, 1346
BsaAI YACGTR 1 cut(s) 716
BsaHI GRCGYC 1 cut(s) 710
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 3 cut(s) 378, 916, 1211
BsaWI WCCGGW 1 cut(s) 154
BsaXI ACNNNNNCTCC 2 cut(s) 603, 633
Bsc4I CCNNNNNNNGG 2 cut(s) 643, 1211
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 808
BseBI CCWGG 3 cut(s) 525, 1212, 1335
BseDI CCNNGG 3 cut(s) 378, 916, 1211
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 2 cut(s) 643, 1211
BseMII CTCAG 4 cut(s) 77, 131, 939, 1415
BseNI ACTGG 1 cut(s) 808
BseRI GAGGAG 1 cut(s) 855
BseXI GCAGC 2 cut(s) 946, 1262
BseYI CCCAGC 1 cut(s) 597
BshFI GGCC 2 cut(s) 655, 993
BshTI ACCGGT 1 cut(s) 154
BsiSI CCGG 2 cut(s) 132, 155
BslFI GGGAC 1 cut(s) 579
BslI CCNNNNNNNGG 2 cut(s) 643, 1211
BsmAI GTCTC 6 cut(s) 30, 66, 82, 120, 206, 867
BsmBI CGTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 579
BsnI GGCC 2 cut(s) 655, 993
Bso31I GGTCTC 1 cut(s) 30
Bsp119I TTCGAA 1 cut(s) 28
Bsp143I GATC 7 cut(s) 418, 557, 739, 817, 1155, 1197, 1279
Bsp1720I GCTNAGC 2 cut(s) 181, 1350
BspACI CCGC 3 cut(s) 18, 209, 1259
BspANI GGCC 2 cut(s) 655, 993
BspCNI CTCAG 4 cut(s) 76, 130, 938, 1414
BspLI GGNNCC 2 cut(s) 559, 1097
BspMI ACCTGC 1 cut(s) 1107
BspPI GGATC 3 cut(s) 552, 565, 1274
BspT104I TTCGAA 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 154
BsrI ACTGG 1 cut(s) 808
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 3 cut(s) 378, 916, 1211
BssMI GATC 7 cut(s) 418, 557, 739, 817, 1155, 1197, 1279
BssNI GRCGYC 1 cut(s) 710
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 3 cut(s) 525, 1212, 1335
Bst4CI ACNGT 5 cut(s) 217, 468, 679, 828, 1063
Bst6I CTCTTC 3 cut(s) 584, 852, 973
BstACI GRCGYC 1 cut(s) 710
BstAPI GCANNNNNTGC 3 cut(s) 195, 1256, 1360
BstBAI YACGTR 1 cut(s) 716
BstBI TTCGAA 1 cut(s) 28
BstC8I GCNNGC 3 cut(s) 70, 187, 1165
BstDEI CTNAG 8 cut(s) 63, 117, 181, 650, 853, 925, 1350, 1401
BstDSI CCRYGG 1 cut(s) 916
BstF5I GGATG 1 cut(s) 247
BstH2I RGCGCY 1 cut(s) 840
BstHHI GCGC 1 cut(s) 839
BstKTI GATC 7 cut(s) 421, 560, 742, 820, 1158, 1200, 1282
BstMAI GTCTC 6 cut(s) 30, 66, 82, 120, 206, 867
BstMBI GATC 7 cut(s) 418, 557, 739, 817, 1155, 1197, 1279
BstMWI GCNNNNNNNGC 6 cut(s) 186, 195, 229, 314, 1256, 1360
BstNI CCWGG 3 cut(s) 525, 1212, 1335
BstNSI RCATGY 2 cut(s) 189, 522
BstSCI CCNGG 3 cut(s) 523, 1210, 1333
BstV1I GCAGC 2 cut(s) 946, 1262
BstV2I GAAGAC 1 cut(s) 1064
BstX2I RGATCY 3 cut(s) 418, 557, 817
BstYI RGATCY 3 cut(s) 418, 557, 817
BsuRI GGCC 2 cut(s) 655, 993
BtgI CCRYGG 1 cut(s) 916
BtsCI GGATG 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 4 cut(s) 196, 591, 684, 798
BveI ACCTGC 1 cut(s) 1107
Cac8I GCNNGC 3 cut(s) 70, 187, 1165
CfoI GCGC 1 cut(s) 839
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 992
CseI GACGC 1 cut(s) 699
CsiI ACCWGGT 1 cut(s) 1333
Csp6I GTAC 3 cut(s) 460, 566, 1372
CspAI ACCGGT 1 cut(s) 154
CviAII CATG 7 cut(s) 186, 505, 519, 671, 877, 1159, 1360
CviQI GTAC 3 cut(s) 460, 566, 1372
DdeI CTNAG 8 cut(s) 63, 117, 181, 650, 853, 925, 1350, 1401
DpnI GATC 7 cut(s) 420, 559, 741, 819, 1157, 1199, 1281
DpnII GATC 7 cut(s) 418, 557, 739, 817, 1155, 1197, 1279
Eam1104I CTCTTC 3 cut(s) 584, 852, 973
EarI CTCTTC 3 cut(s) 584, 852, 973
EciI GGCGGA 2 cut(s) 7, 224
Eco130I CCWWGG 1 cut(s) 378
Eco31I GGTCTC 1 cut(s) 30
Eco57I CTGAAG 4 cut(s) 326, 567, 988, 1155
Eco72I CACGTG 1 cut(s) 716
EcoO109I RGGNCCY 1 cut(s) 992
EcoRI GAATTC 1 cut(s) 446
EcoRII CCWGG 3 cut(s) 523, 1210, 1333
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 7 cut(s) 189, 508, 522, 674, 880, 1162, 1363
FalI AAGNNNNNCTT 2 cut(s) 1381, 1413
FaqI GGGAC 1 cut(s) 579
FatI CATG 7 cut(s) 185, 504, 518, 670, 876, 1158, 1359
FblI GTMKAC 1 cut(s) 470
Fnu4HI GCNGC 2 cut(s) 960, 1251
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 2 cut(s) 960, 1251
FspBI CTAG 2 cut(s) 869, 1151
GlaI GCGC 1 cut(s) 838
GluI GCNGC 2 cut(s) 960, 1251
GsaI CCCAGC 1 cut(s) 601
GsuI CTGGAG 2 cut(s) 245, 825
HaeII RGCGCY 1 cut(s) 840
HaeIII GGCC 2 cut(s) 655, 993
HapII CCGG 2 cut(s) 132, 155
HgaI GACGC 1 cut(s) 699
HhaI GCGC 1 cut(s) 839
Hin1I GRCGYC 1 cut(s) 710
Hin1II CATG 7 cut(s) 189, 508, 522, 674, 880, 1162, 1363
Hin6I GCGC 1 cut(s) 837
HinP1I GCGC 1 cut(s) 837
HincII GTYRAC 2 cut(s) 798, 882
HindII GTYRAC 2 cut(s) 798, 882
HindIII AAGCTT 2 cut(s) 701, 1306
HinfI GANTC 7 cut(s) 30, 434, 592, 788, 860, 912, 1234
HpaII CCGG 2 cut(s) 132, 155
Hpy166II GTNNAC 6 cut(s) 471, 667, 798, 882, 916, 1000
Hpy188I TCNGA 9 cut(s) 7, 35, 109, 781, 822, 1024, 1095, 1279, 1342
Hpy188III TCNNGA 7 cut(s) 303, 869, 1006, 1031, 1114, 1123, 1151
Hpy8I GTNNAC 6 cut(s) 471, 667, 798, 882, 916, 1000
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 3 cut(s) 983, 1046, 1179
HpyCH4III ACNGT 5 cut(s) 217, 468, 679, 828, 1063
HpyCH4IV ACGT 2 cut(s) 203, 715
HpyCH4V TGCA 9 cut(s) 145, 189, 198, 411, 938, 1076, 1102, 1223, 1363
HpyF10VI GCNNNNNNNGC 6 cut(s) 186, 195, 229, 314, 1256, 1360
HpyF3I CTNAG 8 cut(s) 63, 117, 181, 650, 853, 925, 1350, 1401
HpySE526I ACGT 2 cut(s) 203, 715
Hsp92I GRCGYC 1 cut(s) 710
Hsp92II CATG 7 cut(s) 189, 508, 522, 674, 880, 1162, 1363
HspAI GCGC 1 cut(s) 837
Kzo9I GATC 7 cut(s) 418, 557, 739, 817, 1155, 1197, 1279
LmnI GCTCC 1 cut(s) 61
Lsp1109I GCAGC 2 cut(s) 946, 1262
LweI GCATC 1 cut(s) 672
MabI ACCWGGT 1 cut(s) 1333
MaeI CTAG 2 cut(s) 869, 1151
MaeII ACGT 2 cut(s) 203, 715
MaeIII GTNAC 6 cut(s) 673, 711, 893, 1036, 1242, 1404
MalI GATC 7 cut(s) 420, 559, 741, 819, 1157, 1199, 1281
MboI GATC 7 cut(s) 418, 557, 739, 817, 1155, 1197, 1279
MboII GAAGA 5 cut(s) 573, 601, 869, 990, 1069
MfeI CAATTG 2 cut(s) 606, 1411
MflI RGATCY 3 cut(s) 418, 557, 817
MlyI GAGTC 3 cut(s) 601, 869, 921
MmeI TCCRAC 1 cut(s) 509
MnlI CCTC 8 cut(s) 50, 103, 115, 700, 775, 876, 1039, 1184
MseI TTAA 5 cut(s) 159, 372, 621, 830, 1386
MslI CAYNNNNRTG 1 cut(s) 517
MspI CCGG 2 cut(s) 132, 155
MspR9I CCNGG 3 cut(s) 525, 1212, 1335
MunI CAATTG 2 cut(s) 606, 1411
MvaI CCWGG 3 cut(s) 525, 1212, 1335
MwoI GCNNNNNNNGC 6 cut(s) 186, 195, 229, 314, 1256, 1360
NdeII GATC 7 cut(s) 418, 557, 739, 817, 1155, 1197, 1279
NlaIII CATG 7 cut(s) 189, 508, 522, 674, 880, 1162, 1363
NlaIV GGNNCC 2 cut(s) 559, 1097
NmuCI GTSAC 2 cut(s) 711, 893
NspI RCATGY 2 cut(s) 189, 522
NspV TTCGAA 1 cut(s) 28
PaeI GCATGC 1 cut(s) 189
PfeI GAWTC 4 cut(s) 30, 434, 788, 1234
PflMI CCANNNNNTGG 2 cut(s) 643, 1211
PinAI ACCGGT 1 cut(s) 154
PkrI GCNGC 2 cut(s) 961, 1252
PleI GAGTC 3 cut(s) 600, 868, 920
PmaCI CACGTG 1 cut(s) 716
PmlI CACGTG 1 cut(s) 716
PpsI GAGTC 3 cut(s) 600, 868, 920
Ppu21I YACGTR 1 cut(s) 716
Psp6I CCWGG 3 cut(s) 523, 1210, 1333
PspCI CACGTG 1 cut(s) 716
PspFI CCCAGC 1 cut(s) 597
PspGI CCWGG 3 cut(s) 523, 1210, 1333
PspN4I GGNNCC 2 cut(s) 559, 1097
PspPI GGNCC 1 cut(s) 992
PsuI RGATCY 3 cut(s) 418, 557, 817
RsaI GTAC 3 cut(s) 461, 567, 1373
RsaNI GTAC 3 cut(s) 460, 566, 1372
RseI CAYNNNNRTG 1 cut(s) 517
SaqAI TTAA 5 cut(s) 159, 372, 621, 830, 1386
SatI GCNGC 2 cut(s) 960, 1251
Sau3AI GATC 7 cut(s) 418, 557, 739, 817, 1155, 1197, 1279
Sau96I GGNCC 1 cut(s) 992
SchI GAGTC 3 cut(s) 601, 869, 921
ScrFI CCNGG 3 cut(s) 525, 1212, 1335
SexAI ACCWGGT 1 cut(s) 1333
SfaNI GCATC 1 cut(s) 672
SfuI TTCGAA 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 517
SmlI CTYRAG 2 cut(s) 704, 1325
SmoI CTYRAG 2 cut(s) 704, 1325
SphI GCATGC 1 cut(s) 189
SsiI CCGC 3 cut(s) 18, 209, 1259
SspI AATATT 1 cut(s) 259
SspMI CTAG 2 cut(s) 869, 1151
StyD4I CCNGG 3 cut(s) 523, 1210, 1333
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 5 cut(s) 217, 468, 679, 828, 1063
TaiI ACGT 2 cut(s) 206, 718
TaqI TCGA 3 cut(s) 28, 125, 742
TatI WGTACW 1 cut(s) 565
TfiI GAWTC 4 cut(s) 30, 434, 788, 1234
Tru1I TTAA 5 cut(s) 159, 372, 621, 830, 1386
Tru9I TTAA 5 cut(s) 159, 372, 621, 830, 1386
TscAI CASTG 4 cut(s) 196, 591, 684, 798
TseFI GTSAC 2 cut(s) 711, 893
TseI GCWGC 2 cut(s) 959, 1250
Tsp45I GTSAC 2 cut(s) 711, 893
TspDTI ATGAA 5 cut(s) 311, 439, 459, 495, 501
TspGWI ACGGA 5 cut(s) 48, 912, 924, 933, 1227
TspRI CASTG 4 cut(s) 196, 591, 684, 798
Van91I CCANNNNNTGG 2 cut(s) 643, 1211
XapI RAATTY 5 cut(s) 162, 446, 886, 1018, 1070
XbaI TCTAGA 2 cut(s) 868, 1150
XceI RCATGY 2 cut(s) 189, 522
XcmI CCANNNNNNNNNTGG 1 cut(s) 605
XmiI GTMKAC 1 cut(s) 470
XspI CTAG 2 cut(s) 869, 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.