pycom05g32570

Belongs to the NARF family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
31927757 .. 31931262
3506 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g32570.7

Sequence Viewer

Length: 1428 bp
ATGTCAGAGAAGTTCTCGGCGACGCTTCGAATCGGAGATCTCAACGATTTCATTGCACCGTCCCAGGGCTGCATAGTCTCAGGCCTCAAAGCCTCCTCGACCAAGCCCTCTGCCAAGCCTGAGGTTTCAACTTCTGGCAAGCAAGTGAAAACGGAACCGGTTAAAATTTCACTCAAAGATTGCTTAGCATGCAGTGGTTGCGTAACTTCAGCGGAGACAGTTATGTTGGAGAAGCAAAGTTTGGATGAGTTTCTTCTCAATATTGAAAAAGGAAAAGCTGTCATTGTCTCCCTATCTCCCCAATCAAGAGCTTCACTTGCCGTTTATTTTGGAGTTTCGCCGCTTCAGGTTTTTAGGAAACTCACAACATTTTTTAAGTCCTTGGGTGTAAAGGCTATATTTGACACAAGTACCAGTAGGGATTTAACTCTTGTTGAATCTTGTAACGAGTTCGTCTCAAGGTACAAACAAAGCCAGTTATCTGATGATGAAAGGCATCAATCTTCCTTGCCTATGATTTCATCAGCATGCCCAGGTTGGATATGCTATGCCGAAAAACAACTTGGATCCTATGTTCTGCCTTATATTTCATCGGTGAAGAGTCCCCAGCAAACAATTGGAGTTATTGTTAAAAATCATGTATGCCAAAAAATGGGTCTTAGGCCAGCTGATGTTTACCATGTAACTGTGATGCCTTGTTATGATAAAAAGCTTGAGGCTTCACGTGATGACTTCGTTTTTGAAGTCGATCAATCCGAAAATAATGAAAATGAAGGTCTTAGGGTTCCAGAGGTAGATTCGGTGTTGACATCCGGGGAAGTTTTAGATCTCATACAGTTGAAGGGAGTAGATTTCAAGGGCTTAGAAGAGTCTCCCCTAGATAACATGTTGACAAATTTTAATGAAGGGCATCTTTTTGGTGTCCATGGAAGCTCAGGGGGTTATGCGGAGACAATATTCAGTTATGGTGCTAAAGTGCTCTTTGGAAGAGAAATCAAGGGCCCTATTGATTTCAAAACAGTTAAAAATTCAGACTTCCAAGAAGTGACTTTGGAAGTGGACGGGAAGACTCTGTTGAAATTTGCACTCTGTTATGGCTTCCGCAACCTGCAAAATGTTGTCAGGAAAATCAAAATTGGAAAATGCGATTATCATTTTCTAGAGATCATGGCATGCCCTTCAGGTTGCTTGAATGGTGGAGGACAGATTAAGTCACAGCCCGGACAATCCACAAAGGAGTTGATTCAGTTATTACAAGCAGCTTATATGGAAAATGTCTTGGTTGCTGATCCTTTTGGAAATCCTTTGGTGCGAAACTTATACGATGAGTGGCTTGAGCATCCTGGCTCAGAGAAAGCTAAGCGACTCTTTCACACAGAGTACCACCCTATCGTGAAAAGCCTAACTTCTCAGTTGCACAATTGGTAA

Protein Analysis

476

Amino Acids

52.53

Weight (kDa)

6.24

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013504)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1116
AccB7I CCANNNNNTGG 1 cut(s) 652
AciI CCGC 4 cut(s) 212, 341, 947, 1102
AclWI GGATC 3 cut(s) 561, 574, 1283
AcsI RAATTY 4 cut(s) 165, 895, 1027, 1079
AcuI CTGAAG 3 cut(s) 192, 329, 1164
AcvI CACGTG 1 cut(s) 725
AfaI GTAC 3 cut(s) 412, 464, 1382
AfiI CCNNNNNNNGG 2 cut(s) 65, 652
AflIII ACRYGT 1 cut(s) 885
AgeI ACCGGT 1 cut(s) 157
AgsI TTSAA 9 cut(s) 129, 266, 437, 743, 841, 856, 1015, 1078, 1192
AjnI CCWGG 3 cut(s) 63, 532, 1342
AjuI GAANNNNNNNTTGG 4 cut(s) 224, 256, 546, 578
AloI GAACNNNNNNTCC 2 cut(s) 558, 590
AluBI AGCT 7 cut(s) 278, 311, 668, 712, 933, 1262, 1358
AluI AGCT 7 cut(s) 278, 311, 668, 712, 933, 1262, 1358
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 6 cut(s) 82, 209, 292, 460, 876, 944
AlwI GGATC 3 cut(s) 561, 574, 1283
AoxI GGCC 3 cut(s) 82, 662, 1000
ApaI GGGCCC 1 cut(s) 1004
ApeKI GCWGC 2 cut(s) 69, 1259
ApoI RAATTY 4 cut(s) 165, 895, 1027, 1079
ArsI GACNNNNNNTTYG 4 cut(s) 640, 672, 722, 754
AsiGI ACCGGT 1 cut(s) 157
AspS9I GGNCC 2 cut(s) 1000, 1001
AsuC2I CCSGG 2 cut(s) 814, 1221
AsuHPI GGTGA 1 cut(s) 607
AsuII TTCGAA 1 cut(s) 28
AxyI CCTNAGG 1 cut(s) 120
BaeGI GKGCMC 1 cut(s) 1004
BaeI ACNNNNGTAYC 2 cut(s) 394, 427
BamHI GGATCC 1 cut(s) 566
BanII GRGCYC 1 cut(s) 1004
BbrPI CACGTG 1 cut(s) 725
BbsI GAAGAC 1 cut(s) 1073
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 2 cut(s) 56, 1271
BceAI ACGGC 1 cut(s) 305
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 3 cut(s) 65, 534, 1344
BcnI CCSGG 2 cut(s) 814, 1221
BcoDI GTCTC 6 cut(s) 82, 209, 292, 460, 876, 944
BfaI CTAG 2 cut(s) 878, 1160
BfuAI ACCTGC 1 cut(s) 1116
BglII AGATCT 2 cut(s) 37, 826
BisI GCNGC 3 cut(s) 70, 341, 1260
BlpI GCTNAGC 2 cut(s) 184, 1359
BlsI GCNGC 3 cut(s) 71, 342, 1261
Bme1390I CCNGG 5 cut(s) 65, 534, 814, 1221, 1344
BmgT120I GGNCC 2 cut(s) 1000, 1001
BmiI GGNNCC 4 cut(s) 156, 568, 786, 1002
BmrFI CCNGG 5 cut(s) 65, 534, 814, 1221, 1344
BmsI GCATC 4 cut(s) 505, 681, 919, 1348
BpiI GAAGAC 1 cut(s) 1073
BplI GAGNNNNNCTC 3 cut(s) 31, 440, 472
Bpu10I CCTNAGC 1 cut(s) 934
Bpu1102I GCTNAGC 2 cut(s) 184, 1359
Bpu14I TTCGAA 1 cut(s) 28
BpuEI CTTGAG 3 cut(s) 442, 734, 1355
BpuMI CCSGG 2 cut(s) 814, 1221
BsaAI YACGTR 1 cut(s) 725
BsaJI CCNNGG 6 cut(s) 63, 64, 381, 532, 813, 925
BsaWI WCCGGW 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 612, 642
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 652
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 2 cut(s) 414, 475
Bse21I CCTNAGG 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 51
BseBI CCWGG 3 cut(s) 65, 534, 1344
BseDI CCNNGG 6 cut(s) 63, 64, 381, 532, 813, 925
BseGI GGATG 3 cut(s) 250, 809, 1339
BseLI CCNNNNNNNGG 2 cut(s) 65, 652
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 5 cut(s) 93, 111, 948, 1362, 1424
BseNI ACTGG 2 cut(s) 414, 475
BseRI GAGGAG 1 cut(s) 85
BseSI GKGCMC 1 cut(s) 1004
BseXI GCAGC 2 cut(s) 56, 1271
BseYI CCCAGC 1 cut(s) 606
BshFI GGCC 3 cut(s) 84, 664, 1002
BshTI ACCGGT 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 981
BsiSI CCGG 3 cut(s) 158, 813, 1221
BslFI GGGAC 2 cut(s) 46, 588
BslI CCNNNNNNNGG 2 cut(s) 65, 652
BsmAI GTCTC 6 cut(s) 82, 209, 292, 460, 876, 944
BsmBI CGTCTC 1 cut(s) 460
BsmFI GGGAC 2 cut(s) 46, 588
BsnI GGCC 3 cut(s) 84, 664, 1002
Bsp119I TTCGAA 1 cut(s) 28
Bsp120I GGGCCC 1 cut(s) 1000
Bsp1286I GDGCHC 2 cut(s) 981, 1004
Bsp143I GATC 6 cut(s) 37, 566, 748, 826, 1164, 1288
Bsp1720I GCTNAGC 2 cut(s) 184, 1359
Bsp19I CCATGG 1 cut(s) 925
BspACI CCGC 4 cut(s) 212, 341, 947, 1102
BspANI GGCC 3 cut(s) 84, 664, 1002
BspCNI CTCAG 5 cut(s) 92, 112, 947, 1361, 1423
BspLI GGNNCC 4 cut(s) 156, 568, 786, 1002
BspMI ACCTGC 1 cut(s) 1116
BspPI GGATC 3 cut(s) 561, 574, 1283
BspT104I TTCGAA 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 51
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 2 cut(s) 414, 475
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 6 cut(s) 63, 64, 381, 532, 813, 925
BssMI GATC 6 cut(s) 37, 566, 748, 826, 1164, 1288
BssT1I CCWWGG 2 cut(s) 381, 925
Bst2UI CCWGG 3 cut(s) 65, 534, 1344
Bst4CI ACNGT 5 cut(s) 60, 220, 688, 837, 1021
Bst6I CTCTTC 3 cut(s) 593, 861, 982
BstAPI GCANNNNNTGC 1 cut(s) 198
BstBAI YACGTR 1 cut(s) 725
BstBI TTCGAA 1 cut(s) 28
BstC8I GCNNGC 5 cut(s) 140, 190, 529, 666, 1174
BstDSI CCRYGG 1 cut(s) 925
BstF5I GGATG 3 cut(s) 250, 809, 1339
BstKTI GATC 6 cut(s) 40, 569, 751, 829, 1167, 1291
BstMAI GTCTC 6 cut(s) 82, 209, 292, 460, 876, 944
BstMBI GATC 6 cut(s) 37, 566, 748, 826, 1164, 1288
BstMWI GCNNNNNNNGC 3 cut(s) 189, 198, 317
BstNI CCWGG 3 cut(s) 65, 534, 1344
BstNSI RCATGY 4 cut(s) 192, 531, 889, 1176
BstSCI CCNGG 5 cut(s) 63, 532, 812, 1219, 1342
BstSLI GKGCMC 1 cut(s) 1004
BstV1I GCAGC 2 cut(s) 56, 1271
BstV2I GAAGAC 1 cut(s) 1073
BstX2I RGATCY 3 cut(s) 37, 566, 826
BstYI RGATCY 3 cut(s) 37, 566, 826
Bsu36I CCTNAGG 1 cut(s) 120
BsuRI GGCC 3 cut(s) 84, 664, 1002
BtgI CCRYGG 1 cut(s) 925
BtsCI GGATG 3 cut(s) 250, 809, 1339
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 199
BveI ACCTGC 1 cut(s) 1116
Cac8I GCNNGC 5 cut(s) 140, 190, 529, 666, 1174
Cfr10I RCCGGY 1 cut(s) 157
Cfr13I GGNCC 2 cut(s) 1000, 1001
CseI GACGC 1 cut(s) 31
Csp6I GTAC 3 cut(s) 411, 463, 1381
CspAI ACCGGT 1 cut(s) 157
CviAII CATG 8 cut(s) 189, 528, 638, 680, 886, 926, 1168, 1173
CviQI GTAC 3 cut(s) 411, 463, 1381
DpnI GATC 6 cut(s) 39, 568, 750, 828, 1166, 1290
DpnII GATC 6 cut(s) 37, 566, 748, 826, 1164, 1288
Eam1104I CTCTTC 3 cut(s) 593, 861, 982
EarI CTCTTC 3 cut(s) 593, 861, 982
Eco130I CCWWGG 2 cut(s) 381, 925
Eco147I AGGCCT 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 1004
Eco57I CTGAAG 3 cut(s) 192, 329, 1164
Eco72I CACGTG 1 cut(s) 725
Eco81I CCTNAGG 1 cut(s) 120
EcoO109I RGGNCCY 2 cut(s) 1000, 1001
EcoRII CCWGG 3 cut(s) 63, 532, 1342
EcoT14I CCWWGG 2 cut(s) 381, 925
EcoT38I GRGCYC 1 cut(s) 1004
ErhI CCWWGG 2 cut(s) 381, 925
Esp3I CGTCTC 1 cut(s) 460
FaeI CATG 8 cut(s) 192, 531, 641, 683, 889, 929, 1171, 1176
FalI AAGNNNNNCTT 6 cut(s) 897, 929, 1352, 1384, 1390, 1422
FaqI GGGAC 2 cut(s) 46, 588
FatI CATG 8 cut(s) 188, 527, 637, 679, 885, 925, 1167, 1172
Fnu4HI GCNGC 3 cut(s) 70, 341, 1260
FokI GGATG 3 cut(s) 257, 796, 1326
FriOI GRGCYC 1 cut(s) 1004
Fsp4HI GCNGC 3 cut(s) 70, 341, 1260
FspBI CTAG 2 cut(s) 878, 1160
GluI GCNGC 3 cut(s) 70, 341, 1260
GsaI CCCAGC 1 cut(s) 610
HaeIII GGCC 3 cut(s) 84, 664, 1002
HapII CCGG 3 cut(s) 158, 813, 1221
HgaI GACGC 1 cut(s) 31
Hin1II CATG 8 cut(s) 192, 531, 641, 683, 889, 929, 1171, 1176
HincII GTYRAC 2 cut(s) 807, 891
HindII GTYRAC 2 cut(s) 807, 891
HindIII AAGCTT 1 cut(s) 710
HinfI GANTC 8 cut(s) 30, 437, 601, 797, 869, 1069, 1243, 1365
HpaII CCGG 3 cut(s) 158, 813, 1221
HphI GGTGA 1 cut(s) 607
Hpy166II GTNNAC 4 cut(s) 676, 807, 891, 1060
Hpy188I TCNGA 6 cut(s) 7, 35, 484, 757, 1033, 1351
Hpy188III TCNNGA 5 cut(s) 306, 788, 1123, 1160, 1393
Hpy8I GTNNAC 4 cut(s) 676, 807, 891, 1060
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 4 cut(s) 767, 835, 899, 1188
HpyCH4III ACNGT 5 cut(s) 60, 220, 688, 837, 1021
HpyCH4IV ACGT 1 cut(s) 724
HpyCH4V TGCA 6 cut(s) 56, 72, 192, 1085, 1111, 1417
HpyF10VI GCNNNNNNNGC 3 cut(s) 189, 198, 317
HpySE526I ACGT 1 cut(s) 724
Hsp92II CATG 8 cut(s) 192, 531, 641, 683, 889, 929, 1171, 1176
Kzo9I GATC 6 cut(s) 37, 566, 748, 826, 1164, 1288
Lsp1109I GCAGC 2 cut(s) 56, 1271
LweI GCATC 4 cut(s) 505, 681, 919, 1348
MaeI CTAG 2 cut(s) 878, 1160
MaeII ACGT 1 cut(s) 724
MaeIII GTNAC 5 cut(s) 202, 443, 682, 1045, 1212
MalI GATC 6 cut(s) 39, 568, 750, 828, 1166, 1290
MboI GATC 6 cut(s) 37, 566, 748, 826, 1164, 1288
MboII GAAGA 6 cut(s) 245, 495, 610, 878, 999, 1078
MfeI CAATTG 2 cut(s) 615, 1420
MflI RGATCY 3 cut(s) 37, 566, 826
MhlI GDGCHC 2 cut(s) 981, 1004
MluCI AATT 7 cut(s) 165, 615, 895, 1027, 1079, 1134, 1420
MlyI GAGTC 4 cut(s) 610, 878, 1063, 1359
MmeI TCCRAC 2 cut(s) 207, 518
MnlI CCTC 8 cut(s) 95, 103, 106, 115, 118, 709, 784, 1193
MseI TTAA 7 cut(s) 162, 375, 425, 630, 900, 1023, 1209
MslI CAYNNNNRTG 1 cut(s) 526
MspA1I CMGCKG 2 cut(s) 212, 668
MspI CCGG 3 cut(s) 158, 813, 1221
MspR9I CCNGG 5 cut(s) 65, 534, 814, 1221, 1344
MunI CAATTG 2 cut(s) 615, 1420
MvaI CCWGG 3 cut(s) 65, 534, 1344
MwoI GCNNNNNNNGC 3 cut(s) 189, 198, 317
NciI CCSGG 2 cut(s) 814, 1221
NcoI CCATGG 1 cut(s) 925
NdeII GATC 6 cut(s) 37, 566, 748, 826, 1164, 1288
NlaIII CATG 8 cut(s) 192, 531, 641, 683, 889, 929, 1171, 1176
NlaIV GGNNCC 4 cut(s) 156, 568, 786, 1002
NmuCI GTSAC 2 cut(s) 1045, 1212
NspI RCATGY 4 cut(s) 192, 531, 889, 1176
NspV TTCGAA 1 cut(s) 28
PaeI GCATGC 3 cut(s) 192, 531, 1176
PasI CCCWGGG 1 cut(s) 64
PceI AGGCCT 1 cut(s) 84
PciI ACATGT 1 cut(s) 885
PcsI WCGNNNNNNNCGW 1 cut(s) 753
PfeI GAWTC 4 cut(s) 30, 437, 797, 1243
PflMI CCANNNNNTGG 1 cut(s) 652
PinAI ACCGGT 1 cut(s) 157
PkrI GCNGC 3 cut(s) 71, 342, 1261
PleI GAGTC 4 cut(s) 609, 877, 1063, 1359
PmaCI CACGTG 1 cut(s) 725
PmlI CACGTG 1 cut(s) 725
PpsI GAGTC 4 cut(s) 609, 877, 1063, 1359
Ppu21I YACGTR 1 cut(s) 725
PscI ACATGT 1 cut(s) 885
Psp6I CCWGG 3 cut(s) 63, 532, 1342
PspCI CACGTG 1 cut(s) 725
PspFI CCCAGC 1 cut(s) 606
PspGI CCWGG 3 cut(s) 63, 532, 1342
PspN4I GGNNCC 4 cut(s) 156, 568, 786, 1002
PspOMI GGGCCC 1 cut(s) 1000
PspPI GGNCC 2 cut(s) 1000, 1001
PsuI RGATCY 3 cut(s) 37, 566, 826
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 3 cut(s) 412, 464, 1382
RsaNI GTAC 3 cut(s) 411, 463, 1381
RseI CAYNNNNRTG 1 cut(s) 526
SaqAI TTAA 7 cut(s) 162, 375, 425, 630, 900, 1023, 1209
SatI GCNGC 3 cut(s) 70, 341, 1260
Sau3AI GATC 6 cut(s) 37, 566, 748, 826, 1164, 1288
Sau96I GGNCC 2 cut(s) 1000, 1001
SchI GAGTC 4 cut(s) 610, 878, 1063, 1359
ScrFI CCNGG 5 cut(s) 65, 534, 814, 1221, 1344
SduI GDGCHC 2 cut(s) 981, 1004
SfaNI GCATC 4 cut(s) 505, 681, 919, 1348
SfuI TTCGAA 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 526
SmlI CTYRAG 3 cut(s) 457, 713, 1334
SmoI CTYRAG 3 cut(s) 457, 713, 1334
SphI GCATGC 3 cut(s) 192, 531, 1176
Sse9I AATT 7 cut(s) 165, 615, 895, 1027, 1079, 1134, 1420
SseBI AGGCCT 1 cut(s) 84
SsiI CCGC 4 cut(s) 212, 341, 947, 1102
SspI AATATT 2 cut(s) 262, 957
SspMI CTAG 2 cut(s) 878, 1160
StuI AGGCCT 1 cut(s) 84
StyD4I CCNGG 5 cut(s) 63, 532, 812, 1219, 1342
StyI CCWWGG 2 cut(s) 381, 925
TaaI ACNGT 5 cut(s) 60, 220, 688, 837, 1021
TaiI ACGT 1 cut(s) 727
TaqI TCGA 3 cut(s) 28, 98, 747
TasI AATT 7 cut(s) 165, 615, 895, 1027, 1079, 1134, 1420
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 4 cut(s) 30, 437, 797, 1243
Tru1I TTAA 7 cut(s) 162, 375, 425, 630, 900, 1023, 1209
Tru9I TTAA 7 cut(s) 162, 375, 425, 630, 900, 1023, 1209
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 2 cut(s) 1045, 1212
TseI GCWGC 2 cut(s) 69, 1259
Tsp45I GTSAC 2 cut(s) 1045, 1212
TspDTI ATGAA 7 cut(s) 40, 504, 510, 579, 780, 786, 918
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 1 cut(s) 199
Van91I CCANNNNNTGG 1 cut(s) 652
XapI RAATTY 4 cut(s) 165, 895, 1027, 1079
XbaI TCTAGA 1 cut(s) 1159
XceI RCATGY 4 cut(s) 192, 531, 889, 1176
XcmI CCANNNNNNNNNTGG 1 cut(s) 614
XspI CTAG 2 cut(s) 878, 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.