AT4G16780

homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013964
Physical Location & Seq
Forward (+)
9449114 .. 9450905
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16780.1

Sequence Viewer

Length: 855 bp
ATGATGTTCGAGAAAGACGATCTGGGTCTAAGCTTAGGCTTGAATTTTCCAAAGAAACAGATCAATCTCAAATCAAATCCATCTGTTTCTGTTACTCCTTCTTCTTCTTCTTTTGGATTATTCAGAAGATCTTCATGGAACGAGAGTTTTACTTCTTCAGTTCCAAACTCAGATTCGTCACAAAAAGAAACAAGAACTTTCATCCGAGGAATCGACGTGAACAGACCACCGTCTACAGCGGAATACGGCGACGAAGACGCTGGAGTATCTTCACCTAACAGTACAGTCTCAAGCTCTACAGGGAAAAGAAGCGAGAGAGAAGAAGACACAGATCCACAAGGCTCAAGAGGAATCAGTGACGATGAAGATGGTGATAACTCCAGGAAAAAGCTTAGACTTTCCAAAGATCAATCTGCTATTCTTGAAGAGACCTTCAAAGATCACAGTACTCTCAATCCGAAGCAGAAGCAAGCATTGGCTAAACAATTAGGGTTACGAGCAAGACAAGTGGAAGTTTGGTTTCAGAACAGACGAGCAAGAACAAAGCTGAAGCAAACGGAGGTAGACTGCGAGTTCTTACGGAGATGCTGCGAGAATCTAACGGAAGAGAACCGTCGGCTACAAAAAGAAGTAACGGAATTGAGAGCACTTAAGCTCTCTCCTCAGTTCTACATGCACATGAGCCCACCCACTACTTTGACCATGTGCCCTTCATGTGAACACGTGTCGGTCCCGCCACCACAACCTCAGGCTGCTACGTCAGCGCACCACCGGTCGTTGCCGGTCAATGCGTGGGCTCCTGCGACGAGGATATCTCACGGCTTGACTTTTGACGCTCTTCGTCCTAGGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010016 GO:0010017 GO:0010022 GO:0010033 GO:0010073 GO:0010154 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010582 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048364 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071365 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071840 GO:0080090 GO:0080127 GO:0090567 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905328 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HALZ HD-ZIP_N Homeobox

Protein Analysis

284

Amino Acids

31.85

Weight (kDa)

8.96

Isoelectric Point (pI)

75.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HD-ZIP_N PF04618 2 - 107 3.1e-32 HD-ZIP protein N terminus
Homeodomain PF00046 128 - 182 3.1e-16 Homeodomain
HALZ PF02183 184 - 218 7e-11 Homeobox associated leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013964)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16780
fragaria_vesca FvH4_5g19570
malus_domestica MD04G1061200.v1.1 MD06G1054800.v1.1
prunus_persica Prupe.5G064300_v2.0.a1
pyrus_communis pycom04g05500 pycom06g04580
rosa_chinensis RchiOBHm_Chr7g0204271
rosa_laevigata RLG00000003479
rosa_multiflora Rmu_sc0004975.1_g000005
rosa_roxburghii Rroxscaffold_3G00253270
rosa_rugosa Rorug07G0081500
rosa_samantha Rh7AG212100 Rh7BG210300 Rh7CG224200 Rh7DG219000
rosa_wichuraiana Rw7G018390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 233, 564
AciI CCGC 2 cut(s) 239, 734
AclWI GGATC 1 cut(s) 326
AcsI RAATTY 1 cut(s) 43
AcuI CTGAAG 2 cut(s) 141, 569
AcvI CACGTG 1 cut(s) 724
AfaI GTAC 2 cut(s) 283, 448
AflII CTTAAG 1 cut(s) 650
AflIII ACRYGT 2 cut(s) 721, 723
AgeI ACCGGT 1 cut(s) 771
AgsI TTSAA 3 cut(s) 43, 425, 436
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 1 cut(s) 380
AjuI GAANNNNNNNTTGG 4 cut(s) 157, 189, 458, 490
AluBI AGCT 5 cut(s) 33, 294, 391, 547, 655
AluI AGCT 5 cut(s) 33, 294, 391, 547, 655
Alw21I GWGCWC 1 cut(s) 649
Alw26I GTCTC 2 cut(s) 292, 422
AlwI GGATC 1 cut(s) 326
ApeKI GCWGC 2 cut(s) 588, 752
ApoI RAATTY 1 cut(s) 43
AsiGI ACCGGT 1 cut(s) 771
Asp700I GAANNNNTTC 1 cut(s) 130
AspA2I CCTAGG 1 cut(s) 845
AspLEI GCGC 1 cut(s) 766
AspS9I GGNCC 2 cut(s) 730, 849
AsuHPI GGTGA 2 cut(s) 264, 383
AvaII GGWCC 2 cut(s) 730, 849
AvrII CCTAGG 1 cut(s) 845
AxyI CCTNAGG 1 cut(s) 747
BaeGI GKGCMC 1 cut(s) 710
BanII GRGCYC 2 cut(s) 686, 799
BbrPI CACGTG 1 cut(s) 724
BbsI GAAGAC 2 cut(s) 261, 330
Bbv12I GWGCWC 1 cut(s) 649
BbvI GCAGC 2 cut(s) 575, 739
BccI CCATC 2 cut(s) 88, 362
BceAI ACGGC 2 cut(s) 262, 835
BciT130I CCWGG 1 cut(s) 382
BcoDI GTCTC 2 cut(s) 292, 422
BfaI CTAG 1 cut(s) 846
BfmI CTRYAG 2 cut(s) 234, 297
BfrI CTTAAG 1 cut(s) 650
BglII AGATCT 1 cut(s) 128
BisI GCNGC 2 cut(s) 589, 753
BlnI CCTAGG 1 cut(s) 845
BlsI GCNGC 2 cut(s) 590, 754
BmcAI AGTACT 1 cut(s) 448
Bme1390I CCNGG 1 cut(s) 382
Bme18I GGWCC 2 cut(s) 730, 849
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 2 cut(s) 730, 849
BmiI GGNNCC 2 cut(s) 732, 798
BmrFI CCNGG 1 cut(s) 382
BmsI GCATC 1 cut(s) 575
BoxI GACNNNNGTC 1 cut(s) 229
BpiI GAAGAC 2 cut(s) 261, 330
BplI GAGNNNNNCTC 2 cut(s) 799, 831
BpmI CTGGAG 2 cut(s) 282, 364
Bpu10I CCTNAGC 1 cut(s) 34
BpuEI CTTGAG 2 cut(s) 274, 328
BsaAI YACGTR 1 cut(s) 724
BsaI GGTCTC 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 205, 845
BsaWI WCCGGW 1 cut(s) 771
Bse118I RCCGGY 2 cut(s) 771, 781
Bse21I CCTNAGG 1 cut(s) 747
BseBI CCWGG 1 cut(s) 382
BseDI CCNNGG 2 cut(s) 205, 845
BseGI GGATG 1 cut(s) 201
BseMII CTCAG 3 cut(s) 183, 677, 761
BseRI GAGGAG 1 cut(s) 651
BseSI GKGCMC 1 cut(s) 710
BseXI GCAGC 2 cut(s) 575, 739
Bsh1285I CGRYCG 1 cut(s) 776
BshTI ACCGGT 1 cut(s) 771
BsiEI CGRYCG 1 cut(s) 776
BsiHKAI GWGCWC 1 cut(s) 649
BsiSI CCGG 2 cut(s) 772, 782
BslFI GGGAC 1 cut(s) 716
BsmAI GTCTC 2 cut(s) 292, 422
BsmFI GGGAC 1 cut(s) 716
Bso31I GGTCTC 1 cut(s) 422
Bsp1286I GDGCHC 4 cut(s) 649, 686, 710, 799
Bsp143I GATC 6 cut(s) 19, 60, 128, 331, 406, 439
BspACI CCGC 2 cut(s) 239, 734
BspCNI CTCAG 3 cut(s) 182, 676, 760
BspLI GGNNCC 2 cut(s) 732, 798
BspPI GGATC 1 cut(s) 326
BspQI GCTCTTC 1 cut(s) 843
BspTI CTTAAG 1 cut(s) 650
BspTNI GGTCTC 1 cut(s) 422
BsrFI RCCGGY 2 cut(s) 771, 781
BssAI RCCGGY 2 cut(s) 771, 781
BssECI CCNNGG 2 cut(s) 205, 845
BssMI GATC 6 cut(s) 19, 60, 128, 331, 406, 439
BssT1I CCWWGG 1 cut(s) 845
Bst2UI CCWGG 1 cut(s) 382
Bst4CI ACNGT 5 cut(s) 231, 281, 286, 446, 614
Bst6I CTCTTC 3 cut(s) 420, 600, 843
BstAFI CTTAAG 1 cut(s) 650
BstBAI YACGTR 1 cut(s) 724
BstC8I GCNNGC 1 cut(s) 471
BstDEI CTNAG 6 cut(s) 29, 34, 169, 392, 663, 747
BstF5I GGATG 1 cut(s) 201
BstHHI GCGC 1 cut(s) 766
BstKTI GATC 6 cut(s) 22, 63, 131, 334, 409, 442
BstMAI GTCTC 2 cut(s) 292, 422
BstMBI GATC 6 cut(s) 19, 60, 128, 331, 406, 439
BstMCI CGRYCG 1 cut(s) 776
BstMWI GCNNNNNNNGC 1 cut(s) 761
BstNI CCWGG 1 cut(s) 382
BstNSI RCATGY 1 cut(s) 676
BstPAI GACNNNNGTC 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 380
BstSFI CTRYAG 2 cut(s) 234, 297
BstSLI GKGCMC 1 cut(s) 710
BstV1I GCAGC 2 cut(s) 575, 739
BstV2I GAAGAC 2 cut(s) 261, 330
BstX2I RGATCY 2 cut(s) 128, 331
BstYI RGATCY 2 cut(s) 128, 331
Bsu36I CCTNAGG 1 cut(s) 747
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 471
CfoI GCGC 1 cut(s) 766
Cfr10I RCCGGY 2 cut(s) 771, 781
Cfr13I GGNCC 2 cut(s) 730, 849
CseI GACGC 2 cut(s) 266, 842
Csp6I GTAC 2 cut(s) 282, 447
CspAI ACCGGT 1 cut(s) 771
CspCI CAANNNNNGTGG 2 cut(s) 489, 524
CviAII CATG 5 cut(s) 135, 673, 679, 703, 714
CviQI GTAC 2 cut(s) 282, 447
DdeI CTNAG 6 cut(s) 29, 34, 169, 392, 663, 747
DpnI GATC 6 cut(s) 21, 62, 130, 333, 408, 441
DpnII GATC 6 cut(s) 19, 60, 128, 331, 406, 439
Eam1104I CTCTTC 3 cut(s) 420, 600, 843
EarI CTCTTC 3 cut(s) 420, 600, 843
Eco130I CCWWGG 1 cut(s) 845
Eco24I GRGCYC 2 cut(s) 686, 799
Eco31I GGTCTC 1 cut(s) 422
Eco32I GATATC 1 cut(s) 813
Eco47I GGWCC 2 cut(s) 730, 849
Eco57I CTGAAG 2 cut(s) 141, 569
Eco72I CACGTG 1 cut(s) 724
Eco81I CCTNAGG 1 cut(s) 747
EcoO109I RGGNCCY 1 cut(s) 849
EcoRII CCWGG 1 cut(s) 380
EcoRV GATATC 1 cut(s) 813
EcoT14I CCWWGG 1 cut(s) 845
EcoT38I GRGCYC 2 cut(s) 686, 799
ErhI CCWWGG 1 cut(s) 845
FaeI CATG 5 cut(s) 138, 676, 682, 706, 717
FaiI YATR 5 cut(s) 136, 674, 680, 704, 715
FaqI GGGAC 1 cut(s) 716
FatI CATG 5 cut(s) 134, 672, 678, 702, 713
FauI CCCGC 1 cut(s) 741
FblI GTMKAC 2 cut(s) 233, 564
Fnu4HI GCNGC 2 cut(s) 589, 753
FokI GGATG 1 cut(s) 188
FriOI GRGCYC 2 cut(s) 686, 799
Fsp4HI GCNGC 2 cut(s) 589, 753
FspBI CTAG 1 cut(s) 846
GlaI GCGC 1 cut(s) 765
GluI GCNGC 2 cut(s) 589, 753
GsuI CTGGAG 2 cut(s) 282, 364
HapII CCGG 2 cut(s) 772, 782
HgaI GACGC 2 cut(s) 266, 842
HhaI GCGC 1 cut(s) 766
Hin1II CATG 5 cut(s) 138, 676, 682, 706, 717
Hin6I GCGC 1 cut(s) 764
HinP1I GCGC 1 cut(s) 764
HindIII AAGCTT 2 cut(s) 31, 389
HinfI GANTC 4 cut(s) 173, 210, 351, 595
HpaII CCGG 2 cut(s) 772, 782
HphI GGTGA 2 cut(s) 264, 383
Hpy166II GTNNAC 4 cut(s) 220, 234, 565, 719
Hpy188I TCNGA 5 cut(s) 125, 172, 206, 459, 525
Hpy188III TCNNGA 3 cut(s) 10, 345, 422
Hpy8I GTNNAC 4 cut(s) 220, 234, 565, 719
Hpy99I CGWCG 4 cut(s) 218, 254, 618, 808
HpyAV CCTTC 3 cut(s) 108, 442, 720
HpyCH4III ACNGT 5 cut(s) 231, 281, 286, 446, 614
HpyCH4IV ACGT 3 cut(s) 216, 723, 758
HpyCH4V TGCA 1 cut(s) 676
HpyF10VI GCNNNNNNNGC 1 cut(s) 761
HpyF3I CTNAG 6 cut(s) 29, 34, 169, 392, 663, 747
HpySE526I ACGT 3 cut(s) 216, 723, 758
Hsp92II CATG 5 cut(s) 138, 676, 682, 706, 717
HspAI GCGC 1 cut(s) 764
Kzo9I GATC 6 cut(s) 19, 60, 128, 331, 406, 439
LguI GCTCTTC 1 cut(s) 843
LmnI GCTCC 1 cut(s) 802
LpnPI CCDG 9 cut(s) 8, 246, 285, 367, 394, 734, 785, 795, 813
Lsp1109I GCAGC 2 cut(s) 575, 739
LweI GCATC 1 cut(s) 575
MaeI CTAG 1 cut(s) 846
MaeII ACGT 3 cut(s) 216, 723, 758
MaeIII GTNAC 5 cut(s) 91, 177, 356, 492, 631
MalI GATC 6 cut(s) 21, 62, 130, 333, 408, 441
MboI GATC 6 cut(s) 19, 60, 128, 331, 406, 439
MflI RGATCY 2 cut(s) 128, 331
MhlI GDGCHC 4 cut(s) 649, 686, 710, 799
MluCI AATT 3 cut(s) 43, 485, 638
MnlI CCTC 6 cut(s) 200, 341, 553, 672, 756, 801
MroXI GAANNNNTTC 1 cut(s) 130
MseI TTAA 1 cut(s) 651
MslI CAYNNNNRTG 1 cut(s) 677
MspA1I CMGCKG 1 cut(s) 239
MspCI CTTAAG 1 cut(s) 650
MspI CCGG 2 cut(s) 772, 782
MspR9I CCNGG 1 cut(s) 382
MvaI CCWGG 1 cut(s) 382
MwoI GCNNNNNNNGC 1 cut(s) 761
NdeII GATC 6 cut(s) 19, 60, 128, 331, 406, 439
NlaIII CATG 5 cut(s) 138, 676, 682, 706, 717
NlaIV GGNNCC 2 cut(s) 732, 798
NmuCI GTSAC 2 cut(s) 177, 356
NspI RCATGY 1 cut(s) 676
PciSI GCTCTTC 1 cut(s) 843
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PdmI GAANNNNTTC 1 cut(s) 130
PfeI GAWTC 4 cut(s) 173, 210, 351, 595
PfoI TCCNGGA 1 cut(s) 380
PinAI ACCGGT 1 cut(s) 771
PkrI GCNGC 2 cut(s) 590, 754
PmaCI CACGTG 1 cut(s) 724
PmlI CACGTG 1 cut(s) 724
Ppu21I YACGTR 1 cut(s) 724
PpuMI RGGWCCY 1 cut(s) 849
PshAI GACNNNNGTC 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 849
Psp6I CCWGG 1 cut(s) 380
PspCI CACGTG 1 cut(s) 724
PspGI CCWGG 1 cut(s) 380
PspN4I GGNNCC 2 cut(s) 732, 798
PspPI GGNCC 2 cut(s) 730, 849
PspPPI RGGWCCY 1 cut(s) 849
PsuI RGATCY 2 cut(s) 128, 331
RsaI GTAC 2 cut(s) 283, 448
RsaNI GTAC 2 cut(s) 282, 447
RseI CAYNNNNRTG 1 cut(s) 677
SapI GCTCTTC 1 cut(s) 843
SaqAI TTAA 1 cut(s) 651
SatI GCNGC 2 cut(s) 589, 753
Sau3AI GATC 6 cut(s) 19, 60, 128, 331, 406, 439
Sau96I GGNCC 2 cut(s) 730, 849
ScaI AGTACT 1 cut(s) 448
ScrFI CCNGG 1 cut(s) 382
SduI GDGCHC 4 cut(s) 649, 686, 710, 799
SfaNI GCATC 1 cut(s) 575
SfcI CTRYAG 2 cut(s) 234, 297
SinI GGWCC 2 cut(s) 730, 849
SmiMI CAYNNNNRTG 1 cut(s) 677
SmlI CTYRAG 3 cut(s) 289, 343, 650
SmoI CTYRAG 3 cut(s) 289, 343, 650
Sse9I AATT 3 cut(s) 43, 485, 638
SsiI CCGC 2 cut(s) 239, 734
SspMI CTAG 1 cut(s) 846
StyD4I CCNGG 1 cut(s) 380
StyI CCWWGG 1 cut(s) 845
TaaI ACNGT 5 cut(s) 231, 281, 286, 446, 614
TaiI ACGT 3 cut(s) 219, 726, 761
TaqI TCGA 2 cut(s) 9, 213
TaqII GACCGA 1 cut(s) 718
TasI AATT 3 cut(s) 43, 485, 638
TatI WGTACW 2 cut(s) 281, 446
TfiI GAWTC 4 cut(s) 173, 210, 351, 595
Tru1I TTAA 1 cut(s) 651
Tru9I TTAA 1 cut(s) 651
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 2 cut(s) 177, 356
TseI GCWGC 2 cut(s) 588, 752
Tsp45I GTSAC 2 cut(s) 177, 356
TspDTI ATGAA 4 cut(s) 123, 190, 378, 702
TspGWI ACGGA 4 cut(s) 572, 595, 617, 650
TspRI CASTG 1 cut(s) 361
Vha464I CTTAAG 1 cut(s) 650
VpaK11BI GGWCC 2 cut(s) 730, 849
XapI RAATTY 1 cut(s) 43
XceI RCATGY 1 cut(s) 676
XmaJI CCTAGG 1 cut(s) 845
XmiI GTMKAC 2 cut(s) 233, 564
XmnI GAANNNNTTC 1 cut(s) 130
XspI CTAG 1 cut(s) 846
ZrmI AGTACT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.