MD06G1054800.v1.1

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0013964
Physical Location & Seq
Forward (+)
8047099 .. 8049357
2259 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1054800.v1.1.491

Sequence Viewer

Length: 933 bp
ATGATGGTTGAAAGCGAGGATTTGGGTCTCGGTCTCAGCTTGAATTTTCCTCACACCCATAACAATCAAAGCAGCAGCCGCTTTCAGCTGAATCTGATGCCTTCTCTCCTCCCAACTTCTGCTGCTGCTTCTTCTTCTCCTTCTGGCTTTCTTCCCCAAATGCCCCTCTGGAATAATCCCTTGCCTTCTTCAGATCTAAATTCTAACTCGGAGACGTGCCGGGCCGGGCCCCGATCATTCCTGCGGGGCATCGACGTGAACCAGCTGCCACCGACGGGCGATTGCGAAGAAGCGGGGGTGTCCTCCCCCAACAGCACCGTGTCGACCGTGAGTGGCAAGCGGAGCGAGAGAGACACCAATGGCGAAGATCTGGACCTCGAGAGGGACTGCTCTCGAGGCCTCAGCGACGAAGAGGACGGCGAGACCTCCAGAAAGAAGCTCAGGCTCTCTAAGGACCAGTCCGGCATTCTCGAAGAGAGCTTCAAGGAGCACAACACTCTCAACCCTAAGCAAAAATTGGCGTTGGCGAAACAGCTTGGTCTTCGGCCTAGACAAGTGGAGGTCTGGTTTCAGAACAGAAGAGCAAGAACCAAGCTGAAGCAAACAGAGGTGGACTGTGAGTTCTTGAAGAGGTGCTGTGAGAATCTGACGGAGCGGAACAGGCGGTTGCAAAAAGAGGTTCAGGAGCTGAGAGCACTGAAACTTTCCCCGCAGTTCTATATGCAGATGACCCCACCCACAACACTCACCATGTGCCCCTCGTGTGAGCGTGTCGGGGTCCCAACCAACTCCTCATCGTCCGCGGCCGATCCTCGGCCCCACTCGCAGATGGGCCCCGTTCAGCGGCATCCGTTGCCTATCAAACCCTGGGCCTCCGCCGCCACCGTCCCCCACCGGCCGTTGCCTTTCGACATCTTCCATCCCCGGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010016 GO:0010017 GO:0010022 GO:0010033 GO:0010073 GO:0010154 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010582 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048364 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071365 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071840 GO:0080090 GO:0080127 GO:0090567 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905328 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HALZ HD-ZIP_N Homeobox

Protein Analysis

311

Amino Acids

34.6

Weight (kDa)

8.42

Isoelectric Point (pI)

64.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HD-ZIP_N PF04618 2 - 118 1.3e-27 HD-ZIP protein N terminus
Homeodomain PF00046 144 - 198 3.7e-16 Homeodomain
HALZ PF02183 200 - 234 6.7e-10 Homeobox associated leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013964)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16780
fragaria_vesca FvH4_5g19570
malus_domestica MD04G1061200.v1.1 MD06G1054800.v1.1
prunus_persica Prupe.5G064300_v2.0.a1
pyrus_communis pycom04g05500 pycom06g04580
rosa_chinensis RchiOBHm_Chr7g0204271
rosa_laevigata RLG00000003479
rosa_multiflora Rmu_sc0004975.1_g000005
rosa_roxburghii Rroxscaffold_3G00253270
rosa_rugosa Rorug07G0081500
rosa_samantha Rh7AG212100 Rh7BG210300 Rh7CG224200 Rh7DG219000
rosa_wichuraiana Rw7G018390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 655
AccI GTMKAC 1 cut(s) 323
AccII CGCG 1 cut(s) 803
AclWI GGATC 1 cut(s) 803
AcoI YGGCCR 2 cut(s) 804, 896
AcsI RAATTY 2 cut(s) 43, 199
AcuI CTGAAG 2 cut(s) 174, 617
AdeI CACNNNGTG 1 cut(s) 753
AfiI CCNNNNNNNGG 4 cut(s) 275, 382, 813, 843
AgsI TTSAA 4 cut(s) 11, 43, 484, 628
AjiI CACGTC 2 cut(s) 216, 256
AjnI CCWGG 1 cut(s) 866
AloI GAACNNNNNNTCC 2 cut(s) 605, 637
AluBI AGCT 8 cut(s) 39, 88, 265, 439, 480, 535, 595, 688
AluI AGCT 8 cut(s) 39, 88, 265, 439, 480, 535, 595, 688
Alw21I GWGCWC 2 cut(s) 492, 697
Alw26I GTCTC 5 cut(s) 32, 38, 206, 345, 416
AlwI GGATC 1 cut(s) 803
AlwNI CAGNNNCTG 1 cut(s) 688
Ama87I CYCGRG 2 cut(s) 377, 393
AoxI GGCC 9 cut(s) 222, 227, 397, 545, 804, 815, 832, 870, 896
ApaI GGGCCC 2 cut(s) 231, 836
ApeKI GCWGC 5 cut(s) 72, 75, 122, 125, 265
ApoI RAATTY 2 cut(s) 43, 199
AsuC2I CCSGG 3 cut(s) 221, 226, 925
AsuHPI GGTGA 1 cut(s) 739
AvaI CYCGRG 2 cut(s) 377, 393
AvaII GGWCC 3 cut(s) 373, 454, 778
BaeGI GKGCMC 3 cut(s) 231, 758, 836
BanII GRGCYC 2 cut(s) 231, 836
BauI CACGAG 1 cut(s) 760
BbsI GAAGAC 1 cut(s) 533
Bbv12I GWGCWC 2 cut(s) 492, 697
BbvCI CCTCAGC 1 cut(s) 401
BbvI GCAGC 5 cut(s) 84, 87, 109, 112, 252
BccI CCATC 2 cut(s) 823, 927
BceAI ACGGC 2 cut(s) 433, 883
BciT130I CCWGG 1 cut(s) 868
BcnI CCSGG 3 cut(s) 221, 226, 925
BcoDI GTCTC 5 cut(s) 32, 38, 206, 345, 416
BfaI CTAG 1 cut(s) 549
BglII AGATCT 2 cut(s) 193, 367
BisI GCNGC 9 cut(s) 73, 76, 79, 123, 126, 266, 804, 845, 879
BlsI GCNGC 9 cut(s) 74, 77, 80, 124, 127, 267, 805, 846, 880
Bme1390I CCNGG 4 cut(s) 221, 226, 868, 925
Bme18I GGWCC 3 cut(s) 373, 454, 778
BmeT110I CYCGRG 2 cut(s) 377, 393
BmgBI CACGTC 2 cut(s) 216, 256
BmiI GGNNCC 7 cut(s) 229, 230, 779, 780, 818, 834, 835
BmrFI CCNGG 4 cut(s) 221, 226, 868, 925
BmsI GCATC 3 cut(s) 87, 258, 856
BpiI GAAGAC 1 cut(s) 533
BpmI CTGGAG 1 cut(s) 412
Bpu10I CCTNAGC 3 cut(s) 401, 440, 507
BpuMI CCSGG 3 cut(s) 221, 226, 925
BsaI GGTCTC 3 cut(s) 32, 38, 416
BsaJI CCNNGG 5 cut(s) 801, 812, 866, 867, 923
BsaXI ACNNNNNCTCC 2 cut(s) 551, 581
Bsc4I CCNNNNNNNGG 4 cut(s) 275, 382, 813, 843
Bse118I RCCGGY 1 cut(s) 894
Bse1I ACTGG 1 cut(s) 457
BseBI CCWGG 1 cut(s) 868
BseDI CCNNGG 5 cut(s) 801, 812, 866, 867, 923
BseGI GGATG 2 cut(s) 847, 919
BseLI CCNNNNNNNGG 4 cut(s) 275, 382, 813, 843
BseMII CTCAG 4 cut(s) 49, 415, 454, 680
BseNI ACTGG 1 cut(s) 457
BseRI GAGGAG 2 cut(s) 98, 781
BseSI GKGCMC 3 cut(s) 231, 758, 836
BseX3I CGGCCG 2 cut(s) 804, 896
BseXI GCAGC 5 cut(s) 84, 87, 109, 112, 252
Bsh1236I CGCG 1 cut(s) 803
Bsh1285I CGRYCG 4 cut(s) 327, 807, 899, 929
BshFI GGCC 9 cut(s) 224, 229, 399, 547, 806, 817, 834, 872, 898
BsiEI CGRYCG 4 cut(s) 327, 807, 899, 929
BsiHKAI GWGCWC 2 cut(s) 492, 697
BsiHKCI CYCGRG 2 cut(s) 377, 393
BsiSI CCGG 5 cut(s) 220, 225, 462, 895, 925
BslFI GGGAC 3 cut(s) 398, 764, 872
BslI CCNNNNNNNGG 4 cut(s) 275, 382, 813, 843
BsmAI GTCTC 5 cut(s) 32, 38, 206, 345, 416
BsmBI CGTCTC 1 cut(s) 206
BsmFI GGGAC 3 cut(s) 398, 764, 872
BsmI GAATGC 1 cut(s) 465
BsnI GGCC 9 cut(s) 224, 229, 399, 547, 806, 817, 834, 872, 898
Bso31I GGTCTC 3 cut(s) 32, 38, 416
BsoBI CYCGRG 2 cut(s) 377, 393
Bsp120I GGGCCC 2 cut(s) 227, 832
Bsp1286I GDGCHC 5 cut(s) 231, 492, 697, 758, 836
Bsp143I GATC 4 cut(s) 193, 233, 367, 808
BspANI GGCC 9 cut(s) 224, 229, 399, 547, 806, 817, 834, 872, 898
BspCNI CTCAG 4 cut(s) 48, 414, 453, 681
BspFNI CGCG 1 cut(s) 803
BspLI GGNNCC 7 cut(s) 229, 230, 779, 780, 818, 834, 835
BspPI GGATC 1 cut(s) 803
BspQI GCTCTTC 1 cut(s) 574
BspTNI GGTCTC 3 cut(s) 32, 38, 416
BsrBI CCGCTC 1 cut(s) 655
BsrFI RCCGGY 1 cut(s) 894
BsrI ACTGG 1 cut(s) 457
BssAI RCCGGY 1 cut(s) 894
BssECI CCNNGG 5 cut(s) 801, 812, 866, 867, 923
BssMI GATC 4 cut(s) 193, 233, 367, 808
BssSI CACGAG 1 cut(s) 760
Bst2BI CACGAG 1 cut(s) 760
Bst2UI CCWGG 1 cut(s) 868
Bst4CI ACNGT 4 cut(s) 319, 328, 617, 886
Bst6I CTCTTC 4 cut(s) 405, 468, 574, 623
BstAPI GCANNNNNTGC 1 cut(s) 853
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 6 cut(s) 35, 401, 440, 450, 507, 689
BstDSI CCRYGG 1 cut(s) 801
BstF5I GGATG 2 cut(s) 847, 919
BstFNI CGCG 1 cut(s) 803
BstKTI GATC 4 cut(s) 196, 236, 370, 811
BstMAI GTCTC 5 cut(s) 32, 38, 206, 345, 416
BstMBI GATC 4 cut(s) 193, 233, 367, 808
BstMCI CGRYCG 4 cut(s) 327, 807, 899, 929
BstMWI GCNNNNNNNGC 7 cut(s) 78, 342, 396, 661, 823, 853, 878
BstNI CCWGG 1 cut(s) 868
BstSCI CCNGG 4 cut(s) 219, 224, 866, 923
BstSLI GKGCMC 3 cut(s) 231, 758, 836
BstUI CGCG 1 cut(s) 803
BstV1I GCAGC 5 cut(s) 84, 87, 109, 112, 252
BstV2I GAAGAC 1 cut(s) 533
BstX2I RGATCY 2 cut(s) 193, 367
BstYI RGATCY 2 cut(s) 193, 367
BstZI CGGCCG 2 cut(s) 804, 896
BsuRI GGCC 9 cut(s) 224, 229, 399, 547, 806, 817, 834, 872, 898
BtgI CCRYGG 1 cut(s) 801
BtrI CACGTC 2 cut(s) 216, 256
BtsCI GGATG 2 cut(s) 847, 919
BtsIMutI CAGTG 1 cut(s) 695
Cac8I GCNNGC 1 cut(s) 338
CaiI CAGNNNCTG 1 cut(s) 688
Cfr10I RCCGGY 1 cut(s) 894
Cfr42I CCGCGG 1 cut(s) 804
CviAII CATG 1 cut(s) 751
DdeI CTNAG 6 cut(s) 35, 401, 440, 450, 507, 689
DpnI GATC 4 cut(s) 195, 235, 369, 810
DpnII GATC 4 cut(s) 193, 233, 367, 808
DraIII CACNNNGTG 1 cut(s) 753
EaeI YGGCCR 2 cut(s) 804, 896
EagI CGGCCG 2 cut(s) 804, 896
Eam1104I CTCTTC 4 cut(s) 405, 468, 574, 623
EarI CTCTTC 4 cut(s) 405, 468, 574, 623
EciI GGCGGA 1 cut(s) 865
EclXI CGGCCG 2 cut(s) 804, 896
Eco147I AGGCCT 1 cut(s) 399
Eco24I GRGCYC 2 cut(s) 231, 836
Eco31I GGTCTC 3 cut(s) 32, 38, 416
Eco47I GGWCC 3 cut(s) 373, 454, 778
Eco52I CGGCCG 2 cut(s) 804, 896
Eco57I CTGAAG 2 cut(s) 174, 617
Eco88I CYCGRG 2 cut(s) 377, 393
EcoO109I RGGNCCY 3 cut(s) 228, 778, 833
EcoRII CCWGG 1 cut(s) 866
EcoT38I GRGCYC 2 cut(s) 231, 836
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 1 cut(s) 754
FaiI YATR 4 cut(s) 60, 720, 722, 752
FaqI GGGAC 3 cut(s) 398, 764, 872
FatI CATG 1 cut(s) 750
FauI CCCGC 3 cut(s) 237, 286, 717
FblI GTMKAC 1 cut(s) 323
Fnu4HI GCNGC 9 cut(s) 73, 76, 79, 123, 126, 266, 804, 845, 879
FokI GGATG 2 cut(s) 834, 906
FriOI GRGCYC 2 cut(s) 231, 836
Fsp4HI GCNGC 9 cut(s) 73, 76, 79, 123, 126, 266, 804, 845, 879
FspBI CTAG 1 cut(s) 549
GluI GCNGC 9 cut(s) 73, 76, 79, 123, 126, 266, 804, 845, 879
GsuI CTGGAG 1 cut(s) 412
HaeIII GGCC 9 cut(s) 224, 229, 399, 547, 806, 817, 834, 872, 898
HapII CCGG 5 cut(s) 220, 225, 462, 895, 925
Hin1II CATG 1 cut(s) 754
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HinfI GANTC 2 cut(s) 91, 643
HpaII CCGG 5 cut(s) 220, 225, 462, 895, 925
HphI GGTGA 1 cut(s) 739
Hpy166II GTNNAC 3 cut(s) 259, 324, 613
Hpy188I TCNGA 5 cut(s) 96, 193, 211, 573, 648
Hpy188III TCNNGA 8 cut(s) 169, 371, 379, 393, 429, 470, 625, 683
Hpy8I GTNNAC 3 cut(s) 259, 324, 613
Hpy99I CGWCG 3 cut(s) 257, 277, 410
HpyAV CCTTC 3 cut(s) 111, 150, 195
HpyCH4III ACNGT 4 cut(s) 319, 328, 617, 886
HpyCH4IV ACGT 2 cut(s) 215, 255
HpyCH4V TGCA 2 cut(s) 670, 724
HpyF10VI GCNNNNNNNGC 7 cut(s) 78, 342, 396, 661, 823, 853, 878
HpyF3I CTNAG 6 cut(s) 35, 401, 440, 450, 507, 689
HpySE526I ACGT 2 cut(s) 215, 255
Hsp92II CATG 1 cut(s) 754
KflI GGGWCCC 1 cut(s) 778
KspI CCGCGG 1 cut(s) 804
Kzo9I GATC 4 cut(s) 193, 233, 367, 808
LguI GCTCTTC 1 cut(s) 574
LmnI GCTCC 4 cut(s) 342, 487, 652, 685
Lsp1109I GCAGC 5 cut(s) 84, 87, 109, 112, 252
LweI GCATC 3 cut(s) 87, 258, 856
MaeI CTAG 1 cut(s) 549
MaeII ACGT 2 cut(s) 215, 255
MalI GATC 4 cut(s) 195, 235, 369, 810
MbiI CCGCTC 1 cut(s) 655
MboI GATC 4 cut(s) 193, 233, 367, 808
MflI RGATCY 2 cut(s) 193, 367
MhlI GDGCHC 5 cut(s) 231, 492, 697, 758, 836
MluCI AATT 3 cut(s) 43, 199, 515
MslI CAYNNNNRTG 1 cut(s) 254
MspA1I CMGCKG 4 cut(s) 88, 265, 803, 844
MspI CCGG 5 cut(s) 220, 225, 462, 895, 925
MspR9I CCNGG 4 cut(s) 221, 226, 868, 925
Mva1269I GAATGC 1 cut(s) 465
MvaI CCWGG 1 cut(s) 868
MvnI CGCG 1 cut(s) 803
MwoI GCNNNNNNNGC 7 cut(s) 78, 342, 396, 661, 823, 853, 878
NciI CCSGG 3 cut(s) 221, 226, 925
NdeII GATC 4 cut(s) 193, 233, 367, 808
NlaIII CATG 1 cut(s) 754
NlaIV GGNNCC 7 cut(s) 229, 230, 779, 780, 818, 834, 835
NmeAIII GCCGAG 1 cut(s) 793
PaeR7I CTCGAG 2 cut(s) 377, 393
PasI CCCWGGG 1 cut(s) 867
PceI AGGCCT 1 cut(s) 399
PciSI GCTCTTC 1 cut(s) 574
PctI GAATGC 1 cut(s) 465
PfeI GAWTC 2 cut(s) 91, 643
PkrI GCNGC 9 cut(s) 74, 77, 80, 124, 127, 267, 805, 846, 880
PpuMI RGGWCCY 1 cut(s) 778
Psp5II RGGWCCY 1 cut(s) 778
Psp6I CCWGG 1 cut(s) 866
PspGI CCWGG 1 cut(s) 866
PspN4I GGNNCC 7 cut(s) 229, 230, 779, 780, 818, 834, 835
PspOMI GGGCCC 2 cut(s) 227, 832
PspPPI RGGWCCY 1 cut(s) 778
PstNI CAGNNNCTG 1 cut(s) 688
PsuI RGATCY 2 cut(s) 193, 367
PvuII CAGCTG 2 cut(s) 88, 265
RseI CAYNNNNRTG 1 cut(s) 254
SacII CCGCGG 1 cut(s) 804
SalI GTCGAC 1 cut(s) 322
SapI GCTCTTC 1 cut(s) 574
SatI GCNGC 9 cut(s) 73, 76, 79, 123, 126, 266, 804, 845, 879
Sau3AI GATC 4 cut(s) 193, 233, 367, 808
ScrFI CCNGG 4 cut(s) 221, 226, 868, 925
SduI GDGCHC 5 cut(s) 231, 492, 697, 758, 836
SfaNI GCATC 3 cut(s) 87, 258, 856
Sfr274I CTCGAG 2 cut(s) 377, 393
Sfr303I CCGCGG 1 cut(s) 804
SgrBI CCGCGG 1 cut(s) 804
SinI GGWCC 3 cut(s) 373, 454, 778
SlaI CTCGAG 2 cut(s) 377, 393
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 2 cut(s) 377, 393
SmoI CTYRAG 2 cut(s) 377, 393
Sse9I AATT 3 cut(s) 43, 199, 515
SseBI AGGCCT 1 cut(s) 399
SspMI CTAG 1 cut(s) 549
StuI AGGCCT 1 cut(s) 399
StyD4I CCNGG 4 cut(s) 219, 224, 866, 923
TaaI ACNGT 4 cut(s) 319, 328, 617, 886
TaiI ACGT 2 cut(s) 218, 258
TaqI TCGA 6 cut(s) 252, 323, 378, 394, 471, 909
TaqII GACCGA 1 cut(s) 20
TasI AATT 3 cut(s) 43, 199, 515
TauI GCSGC 4 cut(s) 81, 806, 847, 881
TfiI GAWTC 2 cut(s) 91, 643
TscAI CASTG 1 cut(s) 702
TseI GCWGC 5 cut(s) 72, 75, 122, 125, 265
TspGWI ACGGA 2 cut(s) 665, 840
TspRI CASTG 1 cut(s) 702
VpaK11BI GGWCC 3 cut(s) 373, 454, 778
XapI RAATTY 2 cut(s) 43, 199
XhoI CTCGAG 2 cut(s) 377, 393
XmiI GTMKAC 1 cut(s) 323
XspI CTAG 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.