Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0013964

Physical Location & Seq

Genomic Coordinates Forward (+)

21206479 .. 21208887

Gene Structure 2409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG219000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGATGGTTCAAAGAGAAGATTTGGGTCTGAGTCTGAGCTTGAGTGCTTTCCCTCACCAGAATCATAATCCCAACAGCAATAACAATAACAACAACAACAACCTTCAGCTCAATCTCATGCCCTCTTTGGTCCCAACTTCATCTTCGTCTCCTCATTCTGGGTTCAATCCCCAAAAGCCCTCTTGGAATGATGCGTTGGCTTCTTCAGATCGAAACTCGGACACGTGTCGCGCCGCGCCCCGGTCCTTCCTCCGGGGCATCGACGTGAACAGGCTGCCGTCGACGGGCGACTGCGAGGACGTGTCGTCGCCGAACAGCACTGTATCAAGCGTGAGCGGGAAGCGAAGCGAGCGAGAGGCCAATGGCGAAGATCTCGACCTCGAAAGAGACGGCTCACGAGGCATGAGCGACGAAGAGGACGGCGAGACCTCGAGAAAGAAGCTTAGGCTCTCCAAGGACCAGTCGGCCATTCTCGAAGAGAGCTTCAAGGAGCACAACACCCTCAACCCTAAGCAAAAGCTGGCTTTGGCTAAGCAGCTCGGGCTCAGGCCTAGACAGGTGGAAGTCTGGTTTCAGAACAGAAGGGCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010016 GO:0010017 GO:0010022 GO:0010033 GO:0010073 GO:0010154 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010582 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048364 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071365 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071840 GO:0080090 GO:0080127 GO:0090567 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905328 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

197

Amino Acids

21.91

Weight (kDa)

6.92

Isoelectric Point (pI)

59.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HD-ZIP_N	PF04618	2 - 119	2.5e-28	HD-ZIP protein N terminus
Homeodomain	PF00046	145 - 197	8.3e-16	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16780
fragaria_vesca	FvH4_5g19570
malus_domestica	MD04G1061200.v1.1 MD06G1054800.v1.1
prunus_persica	Prupe.5G064300_v2.0.a1
pyrus_communis	pycom04g05500 pycom06g04580
rosa_chinensis	RchiOBHm_Chr7g0204271
rosa_laevigata	RLG00000003479
rosa_multiflora	Rmu_sc0004975.1_g000005
rosa_roxburghii	Rroxscaffold_3G00253270
rosa_rugosa	Rorug07G0081500
rosa_samantha	Rh7AG212100 Rh7BG210300 Rh7CG224200 Rh7DG219000
rosa_wichuraiana	Rw7G018390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	281
AccII	CGCG	2 cut(s)	231, 236
AciI	CCGC	2 cut(s)	234, 336
AcoI	YGGCCR	1 cut(s)	465
AcuI	CTGAAG	2 cut(s)	89, 189
AcvI	CACGTG	1 cut(s)	225
AfiI	CCNNNNNNNGG	4 cut(s)	158, 240, 252, 284
AflIII	ACRYGT	3 cut(s)	222, 224, 300
AgsI	TTSAA	3 cut(s)	11, 166, 487
AhdI	GACNNNNNGTC	1 cut(s)	304
AjiI	CACGTC	2 cut(s)	265, 301
AjuI	GAANNNNNNNTTGG	4 cut(s)	127, 159, 179, 211
AluBI	AGCT	6 cut(s)	39, 109, 442, 483, 520, 538
AluI	AGCT	6 cut(s)	39, 109, 442, 483, 520, 538
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	3 cut(s)	153, 381, 419
Ama87I	CYCGRG	2 cut(s)	430, 539
AoxI	GGCC	3 cut(s)	357, 465, 548
ApeKI	GCWGC	2 cut(s)	274, 535
AspLEI	GCGC	2 cut(s)	233, 238
AspS9I	GGNCC	3 cut(s)	130, 243, 457
AsuC2I	CCSGG	2 cut(s)	241, 254
AsuHPI	GGTGA	1 cut(s)	47
AvaI	CYCGRG	2 cut(s)	430, 539
AvaII	GGWCC	3 cut(s)	130, 243, 457
BanII	GRGCYC	1 cut(s)	546
BauI	CACGAG	1 cut(s)	396
BbrPI	CACGTG	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	2 cut(s)	261, 547
BceAI	ACGGC	3 cut(s)	262, 406, 436
BcnI	CCSGG	2 cut(s)	241, 254
BcoDI	GTCTC	3 cut(s)	153, 381, 419
BfaI	CTAG	1 cut(s)	552
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	3 cut(s)	234, 275, 536
BlpI	GCTNAGC	1 cut(s)	531
BlsI	GCNGC	3 cut(s)	235, 276, 537
Bme1390I	CCNGG	2 cut(s)	241, 254
Bme18I	GGWCC	3 cut(s)	130, 243, 457
BmeRI	GACNNNNNGTC	1 cut(s)	304
BmeT110I	CYCGRG	2 cut(s)	430, 539
BmgBI	CACGTC	2 cut(s)	265, 301
BmgT120I	GGNCC	3 cut(s)	130, 243, 457
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	2 cut(s)	241, 254
BmsI	GCATC	2 cut(s)	181, 267
BoxI	GACNNNNGTC	1 cut(s)	225
Bpu10I	CCTNAGC	3 cut(s)	443, 510, 545
Bpu1102I	GCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	61
BpuMI	CCSGG	2 cut(s)	241, 254
BsaAI	YACGTR	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	419
BsaJI	CCNNGG	3 cut(s)	239, 253, 453
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 240, 252, 284
Bse1I	ACTGG	1 cut(s)	460
BseDI	CCNNGG	3 cut(s)	239, 253, 453
BseLI	CCNNNNNNNGG	4 cut(s)	158, 240, 252, 284
BseMII	CTCAG	3 cut(s)	20, 26, 559
BseNI	ACTGG	1 cut(s)	460
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	261, 547
Bsh1236I	CGCG	2 cut(s)	231, 236
BshFI	GGCC	3 cut(s)	359, 467, 550
BsiHKAI	GWGCWC	1 cut(s)	495
BsiHKCI	CYCGRG	2 cut(s)	430, 539
BsiSI	CCGG	2 cut(s)	241, 253
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	4 cut(s)	158, 240, 252, 284
BsmAI	GTCTC	3 cut(s)	153, 381, 419
BsmBI	CGTCTC	2 cut(s)	153, 381
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	3 cut(s)	359, 467, 550
Bso31I	GGTCTC	1 cut(s)	419
BsoBI	CYCGRG	2 cut(s)	430, 539
Bsp1286I	GDGCHC	2 cut(s)	495, 546
Bsp143I	GATC	2 cut(s)	208, 370
Bsp1720I	GCTNAGC	1 cut(s)	531
BspACI	CCGC	2 cut(s)	234, 336
BspANI	GGCC	3 cut(s)	359, 467, 550
BspCNI	CTCAG	3 cut(s)	21, 27, 558
BspFNI	CGCG	2 cut(s)	231, 236
BspLI	GGNNCC	1 cut(s)	132
BspTNI	GGTCTC	1 cut(s)	419
BsrBI	CCGCTC	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	3 cut(s)	239, 253, 453
BssMI	GATC	2 cut(s)	208, 370
BssSI	CACGAG	1 cut(s)	396
BssT1I	CCWWGG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	2 cut(s)	408, 471
BstBAI	YACGTR	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	350, 522
BstDEI	CTNAG	6 cut(s)	29, 35, 443, 510, 531, 545
BstFNI	CGCG	2 cut(s)	231, 236
BstHHI	GCGC	2 cut(s)	233, 238
BstKTI	GATC	2 cut(s)	211, 373
BstMAI	GTCTC	3 cut(s)	153, 381, 419
BstMBI	GATC	2 cut(s)	208, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	349, 399, 541
BstPAI	GACNNNNGTC	1 cut(s)	225
BstSCI	CCNGG	2 cut(s)	239, 252
BstUI	CGCG	2 cut(s)	231, 236
BstV1I	GCAGC	2 cut(s)	261, 547
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	3 cut(s)	359, 467, 550
BtrI	CACGTC	2 cut(s)	265, 301
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	2 cut(s)	350, 522
CfoI	GCGC	2 cut(s)	233, 238
Cfr13I	GGNCC	3 cut(s)	130, 243, 457
CviAII	CATG	2 cut(s)	118, 403
DdeI	CTNAG	6 cut(s)	29, 35, 443, 510, 531, 545
DpnI	GATC	2 cut(s)	210, 372
DpnII	GATC	2 cut(s)	208, 370
DriI	GACNNNNNGTC	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	465
Eam1104I	CTCTTC	2 cut(s)	408, 471
Eam1105I	GACNNNNNGTC	1 cut(s)	304
EarI	CTCTTC	2 cut(s)	408, 471
Eco130I	CCWWGG	1 cut(s)	453
Eco147I	AGGCCT	1 cut(s)	550
Eco24I	GRGCYC	1 cut(s)	546
Eco31I	GGTCTC	1 cut(s)	419
Eco47I	GGWCC	3 cut(s)	130, 243, 457
Eco57I	CTGAAG	2 cut(s)	89, 189
Eco72I	CACGTG	1 cut(s)	225
Eco88I	CYCGRG	2 cut(s)	430, 539
EcoT14I	CCWWGG	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	453
Esp3I	CGTCTC	2 cut(s)	153, 381
FaeI	CATG	2 cut(s)	121, 406
FaiI	YATR	3 cut(s)	66, 119, 404
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	2 cut(s)	117, 402
FauI	CCCGC	1 cut(s)	329
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	3 cut(s)	234, 275, 536
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	3 cut(s)	234, 275, 536
FspBI	CTAG	1 cut(s)	552
GlaI	GCGC	2 cut(s)	232, 237
GluI	GCNGC	3 cut(s)	234, 275, 536
HaeIII	GGCC	3 cut(s)	359, 467, 550
HapII	CCGG	2 cut(s)	241, 253
HhaI	GCGC	2 cut(s)	233, 238
Hin1II	CATG	2 cut(s)	121, 406
Hin6I	GCGC	2 cut(s)	231, 236
HinP1I	GCGC	2 cut(s)	231, 236
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	2 cut(s)	31, 61
HpaII	CCGG	2 cut(s)	241, 253
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	2 cut(s)	268, 282
Hpy188I	TCNGA	5 cut(s)	30, 36, 208, 220, 576
Hpy188III	TCNNGA	4 cut(s)	374, 396, 432, 473
Hpy8I	GTNNAC	2 cut(s)	268, 282
Hpy99I	CGWCG	5 cut(s)	266, 283, 286, 310, 413
HpyAV	CCTTC	3 cut(s)	113, 256, 576
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	3 cut(s)	224, 264, 300
HpyF10VI	GCNNNNNNNGC	3 cut(s)	349, 399, 541
HpyF3I	CTNAG	6 cut(s)	29, 35, 443, 510, 531, 545
HpySE526I	ACGT	3 cut(s)	224, 264, 300
Hsp92II	CATG	2 cut(s)	121, 406
HspAI	GCGC	2 cut(s)	231, 236
Kzo9I	GATC	2 cut(s)	208, 370
LmnI	GCTCC	1 cut(s)	490
Lsp1109I	GCAGC	2 cut(s)	261, 547
LweI	GCATC	2 cut(s)	181, 267
MaeI	CTAG	1 cut(s)	552
MaeII	ACGT	3 cut(s)	224, 264, 300
MalI	GATC	2 cut(s)	210, 372
MbiI	CCGCTC	1 cut(s)	336
MboI	GATC	2 cut(s)	208, 370
MboII	GAAGA	6 cut(s)	29, 135, 195, 380, 425, 488
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	2 cut(s)	495, 546
MlyI	GAGTC	1 cut(s)	40
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	2 cut(s)	241, 253
MspR9I	CCNGG	2 cut(s)	241, 254
MteI	GCGCNGCGC	1 cut(s)	234
MvnI	CGCG	2 cut(s)	231, 236
MwoI	GCNNNNNNNGC	3 cut(s)	349, 399, 541
NciI	CCSGG	2 cut(s)	241, 254
NdeII	GATC	2 cut(s)	208, 370
NlaIII	CATG	2 cut(s)	121, 406
NlaIV	GGNNCC	1 cut(s)	132
PaeR7I	CTCGAG	1 cut(s)	430
PceI	AGGCCT	1 cut(s)	550
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	3 cut(s)	235, 276, 537
PleI	GAGTC	1 cut(s)	39
PmaCI	CACGTG	1 cut(s)	225
PmlI	CACGTG	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	39
Ppu21I	YACGTR	1 cut(s)	225
PshAI	GACNNNNGTC	1 cut(s)	225
PspCI	CACGTG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	3 cut(s)	130, 243, 457
PsuI	RGATCY	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	263
SalI	GTCGAC	1 cut(s)	280
SatI	GCNGC	3 cut(s)	234, 275, 536
Sau3AI	GATC	2 cut(s)	208, 370
Sau96I	GGNCC	3 cut(s)	130, 243, 457
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	2 cut(s)	241, 254
SduI	GDGCHC	2 cut(s)	495, 546
SfaNI	GCATC	2 cut(s)	181, 267
Sfr274I	CTCGAG	1 cut(s)	430
SgrDI	CGTCGACG	1 cut(s)	280
SinI	GGWCC	3 cut(s)	130, 243, 457
SlaI	CTCGAG	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	2 cut(s)	40, 430
SmoI	CTYRAG	2 cut(s)	40, 430
SseBI	AGGCCT	1 cut(s)	550
SsiI	CCGC	2 cut(s)	234, 336
SspMI	CTAG	1 cut(s)	552
StuI	AGGCCT	1 cut(s)	550
StyD4I	CCNGG	2 cut(s)	239, 252
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	3 cut(s)	227, 267, 303
TaqI	TCGA	7 cut(s)	211, 261, 281, 375, 381, 431, 474
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	61
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	2 cut(s)	274, 535
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	325
VpaK11BI	GGWCC	3 cut(s)	130, 243, 457
XhoI	CTCGAG	1 cut(s)	430
XmiI	GTMKAC	1 cut(s)	281
XspI	CTAG	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.