pycom04g05500

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0013964
Physical Location & Seq
Forward (+)
5303673 .. 5305196
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g05500.4

Sequence Viewer

Length: 936 bp
ATGATGGTTGAAAGAGAAGATTTGGGTCTGAGTCTCAGCTTGAATTTTCCTCAGACCCATAACAATCACAGCAACAGCAGCAGCGGCGGCTTTCGGCTCAATCTGATGCCTTCTCTGCTCCCAACTTCTGCTTCTTCTACTTCTGGCTTTCTTCCCCAAAAGCCCCTCTGGAATGACCCCTTGCCTTCTTCAGATCTAAACTCCAACTCCGAGACATACCGGGCCGTGCCCCGATCGTTCCTTCGGGGCATCGACGTGAACCGGCCGCCTTCGACGGGCGATTGCGAAGACGAAGCGGGGGTGTCCTCCCCCAACAGCACCGTGTCGAGTGTGAGCGGCAAGCGGAGCGAGAGAGACGCCAACGGCGAGGATCTCGACCTCGAGAGGGATGGCTCTCGAGGCATCAGCGACGAAGAGGATGGCGAGGCGTGCAGGAAGAAGCTCAGGCTCTCCAAGGACCAGTCCGCCATTCTCGAAGAGAGCTTCAAGGAGCACAACACTCTCAACCCTAAGCAAAAATTGGCGTTGGCCAAACAGCTTGGGCTTCGGCCTAGACAAGTGGAAGTCTGGTTTCAGAACAGAAGAGCAAGAACAAAGTTGAAGCAAACAGAGGTGGACTGTGAGTTCTTGAAGAGATGCTGTGAGAATCTGACAGAGGAGAACAGGCGGTTGCAAAAAGAGGTTCAGGAGCTGAGAGCACTGAAACTTTCCCCGCAGTTCTACATGCAGATGACCCCACCCACAACACTCACCATGTGCCCCTCGTGTGAGCGTGTCGGGGTCCCACCCAACTCATCATCATCCGCTGCTGATCCCCGGTCCCATCTTCAGATGGGGCCAGTTCAACCACGGCCTGGGCCCATCAACCCCTGGGCCTCCGCCACCACCATCCCCCACCGGCCGTTGCCGTTCGACGCCTTTCACGCCCGGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010016 GO:0010017 GO:0010022 GO:0010033 GO:0010073 GO:0010154 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010582 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048364 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071365 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071840 GO:0080090 GO:0080127 GO:0090567 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905328 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HALZ HD-ZIP_N Homeobox

Protein Analysis

312

Amino Acids

34.64

Weight (kDa)

7.62

Isoelectric Point (pI)

64.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013964)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16780
fragaria_vesca FvH4_5g19570
malus_domestica MD04G1061200.v1.1 MD06G1054800.v1.1
prunus_persica Prupe.5G064300_v2.0.a1
pyrus_communis pycom04g05500 pycom06g04580
rosa_chinensis RchiOBHm_Chr7g0204271
rosa_laevigata RLG00000003479
rosa_multiflora Rmu_sc0004975.1_g000005
rosa_roxburghii Rroxscaffold_3G00253270
rosa_rugosa Rorug07G0081500
rosa_samantha Rh7AG212100 Rh7BG210300 Rh7CG224200 Rh7DG219000
rosa_wichuraiana Rw7G018390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 854
AccBSI CCGCTC 1 cut(s) 336
AclWI GGATC 2 cut(s) 378, 806
AcoI YGGCCR 3 cut(s) 263, 528, 899
AcsI RAATTY 1 cut(s) 43
AcuI CTGAAG 2 cut(s) 174, 812
AcyI GRCGYC 2 cut(s) 357, 915
AdeI CACNNNGTG 1 cut(s) 756
AfiI CCNNNNNNNGG 3 cut(s) 275, 385, 854
AgsI TTSAA 6 cut(s) 11, 43, 487, 601, 631, 845
AjiI CACGTC 1 cut(s) 256
AjnI CCWGG 2 cut(s) 853, 869
AjuI GAANNNNNNNTTGG 2 cut(s) 115, 147
AloI GAACNNNNNNTCC 2 cut(s) 608, 640
AluBI AGCT 5 cut(s) 39, 442, 483, 538, 691
AluI AGCT 5 cut(s) 39, 442, 483, 538, 691
Alw21I GWGCWC 2 cut(s) 495, 700
Alw26I GTCTC 3 cut(s) 38, 206, 348
AlwI GGATC 2 cut(s) 378, 806
AlwNI CAGNNNCTG 1 cut(s) 691
Ama87I CYCGRG 2 cut(s) 380, 396
AoxI GGCC 9 cut(s) 222, 263, 528, 548, 836, 851, 857, 873, 899
ApaI GGGCCC 1 cut(s) 861
ApeKI GCWGC 3 cut(s) 78, 81, 806
ApoI RAATTY 1 cut(s) 43
AspS9I GGNCC 8 cut(s) 222, 457, 781, 819, 836, 857, 858, 873
AsuC2I CCSGG 3 cut(s) 221, 817, 928
AsuHPI GGTGA 1 cut(s) 742
AvaI CYCGRG 2 cut(s) 380, 396
AvaII GGWCC 3 cut(s) 457, 781, 819
BaeGI GKGCMC 3 cut(s) 231, 761, 861
BalI TGGCCA 1 cut(s) 530
BanII GRGCYC 1 cut(s) 861
BauI CACGAG 1 cut(s) 763
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 2 cut(s) 495, 700
BbvI GCAGC 3 cut(s) 90, 93, 793
BccI CCATC 6 cut(s) 383, 413, 826, 831, 869, 896
BceAI ACGGC 5 cut(s) 209, 379, 866, 886, 892
BciT130I CCWGG 2 cut(s) 855, 871
BcnI CCSGG 3 cut(s) 221, 817, 928
BcoDI GTCTC 3 cut(s) 38, 206, 348
BfaI CTAG 1 cut(s) 552
BglII AGATCT 1 cut(s) 193
BisI GCNGC 7 cut(s) 79, 82, 85, 88, 266, 337, 807
BlsI GCNGC 7 cut(s) 80, 83, 86, 89, 267, 338, 808
Bme1390I CCNGG 5 cut(s) 221, 817, 855, 871, 928
Bme18I GGWCC 3 cut(s) 457, 781, 819
BmeT110I CYCGRG 2 cut(s) 380, 396
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 8 cut(s) 222, 457, 781, 819, 836, 857, 858, 873
BmiI GGNNCC 5 cut(s) 782, 783, 821, 837, 859
BmrFI CCNGG 5 cut(s) 221, 817, 855, 871, 928
BmsI GCATC 4 cut(s) 96, 258, 411, 626
BpiI GAAGAC 1 cut(s) 294
Bpu10I CCTNAGC 2 cut(s) 443, 510
BpuMI CCSGG 3 cut(s) 221, 817, 928
BsaHI GRCGYC 2 cut(s) 357, 915
BsaJI CCNNGG 6 cut(s) 453, 815, 848, 854, 869, 870
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 3 cut(s) 275, 385, 854
Bse118I RCCGGY 2 cut(s) 261, 897
Bse1I ACTGG 2 cut(s) 460, 839
BseBI CCWGG 2 cut(s) 855, 871
BseDI CCNNGG 6 cut(s) 453, 815, 848, 854, 869, 870
BseGI GGATG 4 cut(s) 394, 424, 800, 888
BseLI CCNNNNNNNGG 3 cut(s) 275, 385, 854
BseMII CTCAG 5 cut(s) 20, 49, 65, 457, 683
BseNI ACTGG 2 cut(s) 460, 839
BseRI GAGGAG 1 cut(s) 671
BseSI GKGCMC 3 cut(s) 231, 761, 861
BseX3I CGGCCG 2 cut(s) 263, 899
BseXI GCAGC 3 cut(s) 90, 93, 793
BsgI GTGCAG 1 cut(s) 451
Bsh1285I CGRYCG 4 cut(s) 236, 266, 902, 932
BshFI GGCC 9 cut(s) 224, 265, 530, 550, 838, 853, 859, 875, 901
BsiEI CGRYCG 4 cut(s) 236, 266, 902, 932
BsiHKAI GWGCWC 2 cut(s) 495, 700
BsiHKCI CYCGRG 2 cut(s) 380, 396
BsiSI CCGG 5 cut(s) 220, 262, 817, 898, 928
BslFI GGGAC 2 cut(s) 767, 805
BslI CCNNNNNNNGG 3 cut(s) 275, 385, 854
BsmAI GTCTC 3 cut(s) 38, 206, 348
BsmBI CGTCTC 1 cut(s) 348
BsmFI GGGAC 2 cut(s) 767, 805
BsnI GGCC 9 cut(s) 224, 265, 530, 550, 838, 853, 859, 875, 901
BsoBI CYCGRG 2 cut(s) 380, 396
Bsp120I GGGCCC 1 cut(s) 857
Bsp1286I GDGCHC 5 cut(s) 231, 495, 700, 761, 861
Bsp143I GATC 4 cut(s) 193, 233, 370, 811
BspANI GGCC 9 cut(s) 224, 265, 530, 550, 838, 853, 859, 875, 901
BspCNI CTCAG 5 cut(s) 21, 48, 64, 456, 684
BspLI GGNNCC 5 cut(s) 782, 783, 821, 837, 859
BspPI GGATC 2 cut(s) 378, 806
BspQI GCTCTTC 1 cut(s) 577
BsrBI CCGCTC 1 cut(s) 336
BsrFI RCCGGY 2 cut(s) 261, 897
BsrI ACTGG 2 cut(s) 460, 839
BssAI RCCGGY 2 cut(s) 261, 897
BssECI CCNNGG 6 cut(s) 453, 815, 848, 854, 869, 870
BssMI GATC 4 cut(s) 193, 233, 370, 811
BssNI GRCGYC 2 cut(s) 357, 915
BssSI CACGAG 1 cut(s) 763
BssT1I CCWWGG 1 cut(s) 453
Bst2BI CACGAG 1 cut(s) 763
Bst2UI CCWGG 2 cut(s) 855, 871
Bst4CI ACNGT 2 cut(s) 322, 620
Bst6I CTCTTC 4 cut(s) 408, 471, 577, 626
BstACI GRCGYC 2 cut(s) 357, 915
BstC8I GCNNGC 2 cut(s) 341, 430
BstDEI CTNAG 6 cut(s) 29, 35, 51, 443, 510, 692
BstDSI CCRYGG 1 cut(s) 848
BstF5I GGATG 4 cut(s) 394, 424, 800, 888
BstKTI GATC 4 cut(s) 196, 236, 373, 814
BstMAI GTCTC 3 cut(s) 38, 206, 348
BstMBI GATC 4 cut(s) 193, 233, 370, 811
BstMCI CGRYCG 4 cut(s) 236, 266, 902, 932
BstMWI GCNNNNNNNGC 8 cut(s) 78, 84, 87, 115, 345, 399, 429, 923
BstNI CCWGG 2 cut(s) 855, 871
BstNSI RCATGY 1 cut(s) 727
BstSCI CCNGG 5 cut(s) 219, 815, 853, 869, 926
BstSLI GKGCMC 3 cut(s) 231, 761, 861
BstV1I GCAGC 3 cut(s) 90, 93, 793
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 2 cut(s) 193, 370
BstYI RGATCY 2 cut(s) 193, 370
BstZI CGGCCG 2 cut(s) 263, 899
BsuRI GGCC 9 cut(s) 224, 265, 530, 550, 838, 853, 859, 875, 901
BtgI CCRYGG 1 cut(s) 848
BtrI CACGTC 1 cut(s) 256
BtsCI GGATG 4 cut(s) 394, 424, 800, 888
BtsIMutI CAGTG 1 cut(s) 698
Cac8I GCNNGC 2 cut(s) 341, 430
CaiI CAGNNNCTG 1 cut(s) 691
Cfr10I RCCGGY 2 cut(s) 261, 897
Cfr13I GGNCC 8 cut(s) 222, 457, 781, 819, 836, 857, 858, 873
CseI GACGC 2 cut(s) 365, 923
CviAII CATG 2 cut(s) 724, 754
DdeI CTNAG 6 cut(s) 29, 35, 51, 443, 510, 692
DpnI GATC 4 cut(s) 195, 235, 372, 813
DpnII GATC 4 cut(s) 193, 233, 370, 811
DraIII CACNNNGTG 1 cut(s) 756
EaeI YGGCCR 3 cut(s) 263, 528, 899
EagI CGGCCG 2 cut(s) 263, 899
Eam1104I CTCTTC 4 cut(s) 408, 471, 577, 626
EarI CTCTTC 4 cut(s) 408, 471, 577, 626
EciI GGCGGA 2 cut(s) 454, 868
EclXI CGGCCG 2 cut(s) 263, 899
Eco130I CCWWGG 1 cut(s) 453
Eco24I GRGCYC 1 cut(s) 861
Eco47I GGWCC 3 cut(s) 457, 781, 819
Eco52I CGGCCG 2 cut(s) 263, 899
Eco57I CTGAAG 2 cut(s) 174, 812
Eco88I CYCGRG 2 cut(s) 380, 396
EcoO109I RGGNCCY 1 cut(s) 781
EcoRII CCWGG 2 cut(s) 853, 869
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 1 cut(s) 861
ErhI CCWWGG 1 cut(s) 453
Esp3I CGTCTC 1 cut(s) 348
FaeI CATG 2 cut(s) 727, 757
FaiI YATR 4 cut(s) 60, 217, 725, 755
FaqI GGGAC 2 cut(s) 767, 805
FatI CATG 2 cut(s) 723, 753
FauI CCCGC 2 cut(s) 289, 720
Fnu4HI GCNGC 7 cut(s) 79, 82, 85, 88, 266, 337, 807
FokI GGATG 4 cut(s) 401, 431, 787, 875
FriOI GRGCYC 1 cut(s) 861
Fsp4HI GCNGC 7 cut(s) 79, 82, 85, 88, 266, 337, 807
FspBI CTAG 1 cut(s) 552
GluI GCNGC 7 cut(s) 79, 82, 85, 88, 266, 337, 807
HaeIII GGCC 9 cut(s) 224, 265, 530, 550, 838, 853, 859, 875, 901
HapII CCGG 5 cut(s) 220, 262, 817, 898, 928
HgaI GACGC 2 cut(s) 365, 923
Hin1I GRCGYC 2 cut(s) 357, 915
Hin1II CATG 2 cut(s) 727, 757
HinfI GANTC 2 cut(s) 31, 646
HpaII CCGG 5 cut(s) 220, 262, 817, 898, 928
HphI GGTGA 1 cut(s) 742
Hpy166II GTNNAC 2 cut(s) 259, 616
Hpy188I TCNGA 8 cut(s) 30, 54, 105, 193, 211, 576, 651, 831
Hpy188III TCNNGA 7 cut(s) 169, 374, 382, 396, 473, 628, 686
Hpy8I GTNNAC 2 cut(s) 259, 616
Hpy99I CGWCG 4 cut(s) 257, 277, 413, 917
HpyAV CCTTC 4 cut(s) 120, 195, 251, 279
HpyCH4III ACNGT 2 cut(s) 322, 620
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 3 cut(s) 432, 673, 727
HpyF10VI GCNNNNNNNGC 8 cut(s) 78, 84, 87, 115, 345, 399, 429, 923
HpyF3I CTNAG 6 cut(s) 29, 35, 51, 443, 510, 692
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 2 cut(s) 357, 915
Hsp92II CATG 2 cut(s) 727, 757
KflI GGGWCCC 1 cut(s) 781
Kzo9I GATC 4 cut(s) 193, 233, 370, 811
LguI GCTCTTC 1 cut(s) 577
LmnI GCTCC 4 cut(s) 123, 345, 490, 688
Lsp1109I GCAGC 3 cut(s) 90, 93, 793
LweI GCATC 4 cut(s) 96, 258, 411, 626
MaeI CTAG 1 cut(s) 552
MaeII ACGT 1 cut(s) 255
MalI GATC 4 cut(s) 195, 235, 372, 813
MbiI CCGCTC 1 cut(s) 336
MboI GATC 4 cut(s) 193, 233, 370, 811
MflI RGATCY 2 cut(s) 193, 370
MhlI GDGCHC 5 cut(s) 231, 495, 700, 761, 861
MlsI TGGCCA 1 cut(s) 530
MluCI AATT 2 cut(s) 43, 518
MluNI TGGCCA 1 cut(s) 530
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 228
Mox20I TGGCCA 1 cut(s) 530
MscI TGGCCA 1 cut(s) 530
MslI CAYNNNNRTG 2 cut(s) 254, 728
Msp20I TGGCCA 1 cut(s) 530
MspA1I CMGCKG 2 cut(s) 84, 806
MspI CCGG 5 cut(s) 220, 262, 817, 898, 928
MspR9I CCNGG 5 cut(s) 221, 817, 855, 871, 928
MvaI CCWGG 2 cut(s) 855, 871
MwoI GCNNNNNNNGC 8 cut(s) 78, 84, 87, 115, 345, 399, 429, 923
NciI CCSGG 3 cut(s) 221, 817, 928
NdeII GATC 4 cut(s) 193, 233, 370, 811
NlaIII CATG 2 cut(s) 727, 757
NlaIV GGNNCC 5 cut(s) 782, 783, 821, 837, 859
NspI RCATGY 1 cut(s) 727
PaeR7I CTCGAG 2 cut(s) 380, 396
PasI CCCWGGG 1 cut(s) 870
PciSI GCTCTTC 1 cut(s) 577
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PfeI GAWTC 1 cut(s) 646
PflMI CCANNNNNTGG 1 cut(s) 854
PkrI GCNGC 7 cut(s) 80, 83, 86, 89, 267, 338, 808
Ple19I CGATCG 1 cut(s) 236
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 781
Psp5II RGGWCCY 1 cut(s) 781
Psp6I CCWGG 2 cut(s) 853, 869
PspGI CCWGG 2 cut(s) 853, 869
PspN4I GGNNCC 5 cut(s) 782, 783, 821, 837, 859
PspOMI GGGCCC 1 cut(s) 857
PspPI GGNCC 8 cut(s) 222, 457, 781, 819, 836, 857, 858, 873
PspPPI RGGWCCY 1 cut(s) 781
PstNI CAGNNNCTG 1 cut(s) 691
PsuI RGATCY 2 cut(s) 193, 370
PvuI CGATCG 1 cut(s) 236
RseI CAYNNNNRTG 2 cut(s) 254, 728
SapI GCTCTTC 1 cut(s) 577
SatI GCNGC 7 cut(s) 79, 82, 85, 88, 266, 337, 807
Sau3AI GATC 4 cut(s) 193, 233, 370, 811
Sau96I GGNCC 8 cut(s) 222, 457, 781, 819, 836, 857, 858, 873
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 5 cut(s) 221, 817, 855, 871, 928
SduI GDGCHC 5 cut(s) 231, 495, 700, 761, 861
SetI ASST 9 cut(s) 41, 258, 381, 444, 485, 540, 615, 684, 693
SfaNI GCATC 4 cut(s) 96, 258, 411, 626
Sfr274I CTCGAG 2 cut(s) 380, 396
SinI GGWCC 3 cut(s) 457, 781, 819
SlaI CTCGAG 2 cut(s) 380, 396
SmiMI CAYNNNNRTG 2 cut(s) 254, 728
SmlI CTYRAG 2 cut(s) 380, 396
SmoI CTYRAG 2 cut(s) 380, 396
Sse9I AATT 2 cut(s) 43, 518
SspMI CTAG 1 cut(s) 552
StyD4I CCNGG 5 cut(s) 219, 815, 853, 869, 926
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 2 cut(s) 322, 620
TaiI ACGT 1 cut(s) 258
TaqI TCGA 8 cut(s) 252, 272, 326, 375, 381, 397, 474, 912
TasI AATT 2 cut(s) 43, 518
TauI GCSGC 4 cut(s) 87, 90, 268, 339
TfiI GAWTC 1 cut(s) 646
TscAI CASTG 1 cut(s) 705
TseI GCWGC 3 cut(s) 78, 81, 806
TspRI CASTG 1 cut(s) 705
Van91I CCANNNNNTGG 1 cut(s) 854
VpaK11BI GGWCC 3 cut(s) 457, 781, 819
XapI RAATTY 1 cut(s) 43
XceI RCATGY 1 cut(s) 727
XhoI CTCGAG 2 cut(s) 380, 396
XspI CTAG 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.