Prupe.5G064300_v2.0.a1

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013964
Physical Location & Seq
Reverse (-)
7821535 .. 7824168
2634 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G064300.1

Sequence Viewer

Length: 960 bp
ATGATGGTTGAGAGAGATCAAGATTTGGGTTTGAGTCTGAGCTTGAGTTTTCCTCAGACCCACAACCACCACAACAACAACAACAACAACAGCAGCAGCACCACCAGCACCCTTCAGCTCAATCTCATGCCTTCTTTGGCCCCTACTTCTGCTTCTTCTCCTTCTGGGTTTCTTCCTCAAAAACCCTCTTGGAATGAGGCCTTGATTTCTTCAGATCGAAACTCCAACTCCGAAACGTTCCGGGTCGGGCCCCGATCGTTCCTTCGGGGCATCGACGTGAACCGGTTGCCTTCAACGGGCGACTGCGAAGACGAGGCGGGCGTGTCGTCGCCCAACAGCACGGTGTCGAGCGTGAGCGGCAAGCGGAGCGAGAGAGAGGCCAATGGCGAAGATCTCGACATCGAGACTCGAGGCATCAGCGATGAAGAAGACGGCGAGACCTCTAGAAAGAAGCTCAGGCTCTCCAAGGACCAGTCCGCCATTCTCGAAGAGAGCTTCAAGGAGCACAACACTCTCAACCCAAAGCAAAAGTTGGCGTTGGCTAAACAGCTTGGCCTCCGGCCTAGACAAGTGGAAGTCTGGTTTCAGAACAGAAGAGCAAGGACTAAGTTGAAGCAAACGGAGGTGGACTGTGAGTTCTTGAAGAGGTGCTGTGAGAATCTGACAGAGGAGAACAGGCGGTTGCAGAAGGAGGTTCAGGAGCTGAGAGCACTGAAACTTTCCCCACAGTTCTACATGCAAATGACCCCACCCACGACACTCACCATGTGCCCCTCGTGTGAGCGTGTCGCGGTCCCACCCAACTCCTCATCCTCAACCGTCGAGCCCCGGCCCCACCCCCACCCCCACCCCCAAATGGGTTCGGTCCAGACCCGGCCCGTCCCCATCAACCCGTGGGCATCCGCCACCCCAATCCCCCACCGGCCGCTGCCGTTCGAAGCCTTCCACACCCGGACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010016 GO:0010017 GO:0010022 GO:0010033 GO:0010073 GO:0010154 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010582 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048364 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071365 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071840 GO:0080090 GO:0080127 GO:0090567 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905328 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HALZ HD-ZIP_N Homeobox

Protein Analysis

320

Amino Acids

35.76

Weight (kDa)

7.69

Isoelectric Point (pI)

62.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013964)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16780
fragaria_vesca FvH4_5g19570
malus_domestica MD04G1061200.v1.1 MD06G1054800.v1.1
prunus_persica Prupe.5G064300_v2.0.a1
pyrus_communis pycom04g05500 pycom06g04580
rosa_chinensis RchiOBHm_Chr7g0204271
rosa_laevigata RLG00000003479
rosa_multiflora Rmu_sc0004975.1_g000005
rosa_roxburghii Rroxscaffold_3G00253270
rosa_rugosa Rorug07G0081500
rosa_samantha Rh7AG212100 Rh7BG210300 Rh7CG224200 Rh7DG219000
rosa_wichuraiana Rw7G018390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 357
AccII CGCG 1 cut(s) 791
AciI CCGC 8 cut(s) 317, 357, 364, 477, 679, 791, 903, 926
AclI AACGTT 1 cut(s) 236
AcoI YGGCCR 1 cut(s) 923
AcuI CTGAAG 2 cut(s) 98, 195
AdeI CACNNNGTG 1 cut(s) 768
AfiI CCNNNNNNNGG 3 cut(s) 296, 856, 857
AgeI ACCGGT 1 cut(s) 282
AgsI TTSAA 4 cut(s) 294, 499, 613, 643
AjiI CACGTC 1 cut(s) 277
AloI GAACNNNNNNTCC 2 cut(s) 620, 652
AluBI AGCT 6 cut(s) 42, 118, 454, 495, 550, 703
AluI AGCT 6 cut(s) 42, 118, 454, 495, 550, 703
Alw21I GWGCWC 2 cut(s) 507, 712
Alw26I GTCTC 2 cut(s) 398, 431
AlwNI CAGNNNCTG 1 cut(s) 703
Ama87I CYCGRG 1 cut(s) 408
AoxI GGCC 9 cut(s) 138, 198, 248, 378, 553, 560, 830, 875, 923
ApaI GGGCCC 1 cut(s) 252
ApeKI GCWGC 3 cut(s) 93, 96, 928
AsiGI ACCGGT 1 cut(s) 282
AspS9I GGNCC 8 cut(s) 139, 248, 249, 469, 793, 831, 865, 876
AsuC2I CCSGG 4 cut(s) 242, 829, 874, 952
AsuHPI GGTGA 1 cut(s) 754
AsuII TTCGAA 1 cut(s) 936
AvaI CYCGRG 1 cut(s) 408
AvaII GGWCC 3 cut(s) 469, 793, 865
BaeGI GKGCMC 2 cut(s) 252, 773
BanII GRGCYC 2 cut(s) 252, 828
BauI CACGAG 1 cut(s) 775
BbsI GAAGAC 2 cut(s) 315, 435
Bbv12I GWGCWC 2 cut(s) 507, 712
BbvI GCAGC 3 cut(s) 105, 108, 915
BccI CCATC 1 cut(s) 893
BceAI ACGGC 2 cut(s) 448, 916
BcnI CCSGG 4 cut(s) 242, 829, 874, 952
BcoDI GTCTC 2 cut(s) 398, 431
BfaI CTAG 2 cut(s) 444, 564
BglII AGATCT 1 cut(s) 391
BisI GCNGC 5 cut(s) 94, 97, 358, 926, 929
BlsI GCNGC 5 cut(s) 95, 98, 359, 927, 930
Bme1390I CCNGG 4 cut(s) 242, 829, 874, 952
Bme18I GGWCC 3 cut(s) 469, 793, 865
BmeT110I CYCGRG 1 cut(s) 408
BmgBI CACGTC 1 cut(s) 277
BmgT120I GGNCC 8 cut(s) 139, 248, 249, 469, 793, 831, 865, 876
BmiI GGNNCC 5 cut(s) 141, 250, 251, 795, 833
BmrFI CCNGG 4 cut(s) 242, 829, 874, 952
BmsI GCATC 3 cut(s) 279, 423, 908
BpiI GAAGAC 2 cut(s) 315, 435
BplI GAGNNNNNCTC 2 cut(s) 37, 69
Bpu10I CCTNAGC 1 cut(s) 455
Bpu14I TTCGAA 1 cut(s) 936
BpuEI CTTGAG 1 cut(s) 64
BpuMI CCSGG 4 cut(s) 242, 829, 874, 952
BsaI GGTCTC 1 cut(s) 431
BsaJI CCNNGG 3 cut(s) 465, 827, 893
BsaWI WCCGGW 1 cut(s) 282
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 3 cut(s) 296, 856, 857
Bse118I RCCGGY 2 cut(s) 282, 921
Bse1I ACTGG 1 cut(s) 472
BseDI CCNNGG 3 cut(s) 465, 827, 893
BseGI GGATG 2 cut(s) 809, 899
BseLI CCNNNNNNNGG 3 cut(s) 296, 856, 857
BseMII CTCAG 4 cut(s) 29, 68, 469, 695
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 2 cut(s) 683, 796
BseSI GKGCMC 2 cut(s) 252, 773
BseX3I CGGCCG 1 cut(s) 923
BseXI GCAGC 3 cut(s) 105, 108, 915
Bsh1236I CGCG 1 cut(s) 791
Bsh1285I CGRYCG 2 cut(s) 257, 926
BshFI GGCC 9 cut(s) 140, 200, 250, 380, 555, 562, 832, 877, 925
BshTI ACCGGT 1 cut(s) 282
BsiEI CGRYCG 2 cut(s) 257, 926
BsiHKAI GWGCWC 2 cut(s) 507, 712
BsiHKCI CYCGRG 1 cut(s) 408
BsiSI CCGG 7 cut(s) 241, 283, 559, 829, 874, 922, 952
BslFI GGGAC 2 cut(s) 779, 866
BslI CCNNNNNNNGG 3 cut(s) 296, 856, 857
BsmAI GTCTC 2 cut(s) 398, 431
BsmFI GGGAC 2 cut(s) 779, 866
BsnI GGCC 9 cut(s) 140, 200, 250, 380, 555, 562, 832, 877, 925
Bso31I GGTCTC 1 cut(s) 431
BsoBI CYCGRG 1 cut(s) 408
Bsp119I TTCGAA 1 cut(s) 936
Bsp120I GGGCCC 1 cut(s) 248
Bsp1286I GDGCHC 5 cut(s) 252, 507, 712, 773, 828
Bsp143I GATC 4 cut(s) 16, 214, 254, 391
BspACI CCGC 8 cut(s) 317, 357, 364, 477, 679, 791, 903, 926
BspANI GGCC 9 cut(s) 140, 200, 250, 380, 555, 562, 832, 877, 925
BspCNI CTCAG 4 cut(s) 30, 67, 468, 696
BspFNI CGCG 1 cut(s) 791
BspLI GGNNCC 5 cut(s) 141, 250, 251, 795, 833
BspQI GCTCTTC 1 cut(s) 589
BspT104I TTCGAA 1 cut(s) 936
BspTNI GGTCTC 1 cut(s) 431
BsrBI CCGCTC 1 cut(s) 357
BsrFI RCCGGY 2 cut(s) 282, 921
BsrI ACTGG 1 cut(s) 472
BssAI RCCGGY 2 cut(s) 282, 921
BssECI CCNNGG 3 cut(s) 465, 827, 893
BssMI GATC 4 cut(s) 16, 214, 254, 391
BssSI CACGAG 1 cut(s) 775
BssT1I CCWWGG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 775
Bst4CI ACNGT 4 cut(s) 343, 632, 729, 820
Bst6I CTCTTC 3 cut(s) 483, 589, 638
BstBI TTCGAA 1 cut(s) 936
BstC8I GCNNGC 2 cut(s) 319, 362
BstDEI CTNAG 5 cut(s) 38, 54, 455, 606, 704
BstDSI CCRYGG 1 cut(s) 893
BstF5I GGATG 2 cut(s) 809, 899
BstFNI CGCG 1 cut(s) 791
BstKTI GATC 4 cut(s) 19, 217, 257, 394
BstMAI GTCTC 2 cut(s) 398, 431
BstMBI GATC 4 cut(s) 16, 214, 254, 391
BstMCI CGRYCG 2 cut(s) 257, 926
BstMWI GCNNNNNNNGC 3 cut(s) 105, 357, 366
BstNSI RCATGY 1 cut(s) 739
BstSCI CCNGG 4 cut(s) 240, 827, 872, 950
BstSLI GKGCMC 2 cut(s) 252, 773
BstUI CGCG 1 cut(s) 791
BstV1I GCAGC 3 cut(s) 105, 108, 915
BstV2I GAAGAC 2 cut(s) 315, 435
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
BstZI CGGCCG 1 cut(s) 923
BsuRI GGCC 9 cut(s) 140, 200, 250, 380, 555, 562, 832, 877, 925
BtgI CCRYGG 1 cut(s) 893
BtgZI GCGATG 1 cut(s) 435
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 2 cut(s) 809, 899
BtsIMutI CAGTG 1 cut(s) 710
Cac8I GCNNGC 2 cut(s) 319, 362
CaiI CAGNNNCTG 1 cut(s) 703
Cfr10I RCCGGY 2 cut(s) 282, 921
Cfr13I GGNCC 8 cut(s) 139, 248, 249, 469, 793, 831, 865, 876
CspAI ACCGGT 1 cut(s) 282
CviAII CATG 3 cut(s) 127, 736, 766
DdeI CTNAG 5 cut(s) 38, 54, 455, 606, 704
DpnI GATC 4 cut(s) 18, 216, 256, 393
DpnII GATC 4 cut(s) 16, 214, 254, 391
DraIII CACNNNGTG 1 cut(s) 768
EaeI YGGCCR 1 cut(s) 923
EagI CGGCCG 1 cut(s) 923
Eam1104I CTCTTC 3 cut(s) 483, 589, 638
EarI CTCTTC 3 cut(s) 483, 589, 638
EciI GGCGGA 2 cut(s) 466, 892
EclXI CGGCCG 1 cut(s) 923
Eco130I CCWWGG 1 cut(s) 465
Eco147I AGGCCT 1 cut(s) 200
Eco24I GRGCYC 2 cut(s) 252, 828
Eco31I GGTCTC 1 cut(s) 431
Eco47I GGWCC 3 cut(s) 469, 793, 865
Eco52I CGGCCG 1 cut(s) 923
Eco57I CTGAAG 2 cut(s) 98, 195
Eco88I CYCGRG 1 cut(s) 408
EcoO109I RGGNCCY 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 2 cut(s) 252, 828
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 3 cut(s) 130, 739, 769
FaiI YATR 3 cut(s) 128, 737, 767
FaqI GGGAC 2 cut(s) 779, 866
FatI CATG 3 cut(s) 126, 735, 765
FauI CCCGC 1 cut(s) 310
Fnu4HI GCNGC 5 cut(s) 94, 97, 358, 926, 929
FokI GGATG 2 cut(s) 796, 886
FriOI GRGCYC 2 cut(s) 252, 828
Fsp4HI GCNGC 5 cut(s) 94, 97, 358, 926, 929
FspBI CTAG 2 cut(s) 444, 564
GluI GCNGC 5 cut(s) 94, 97, 358, 926, 929
HaeIII GGCC 9 cut(s) 140, 200, 250, 380, 555, 562, 832, 877, 925
HapII CCGG 7 cut(s) 241, 283, 559, 829, 874, 922, 952
Hin1II CATG 3 cut(s) 130, 739, 769
HinfI GANTC 3 cut(s) 34, 406, 658
HpaII CCGG 7 cut(s) 241, 283, 559, 829, 874, 922, 952
HphI GGTGA 1 cut(s) 754
Hpy166II GTNNAC 2 cut(s) 280, 628
Hpy188I TCNGA 6 cut(s) 39, 57, 214, 232, 588, 663
Hpy188III TCNNGA 8 cut(s) 20, 395, 403, 444, 485, 640, 698, 868
Hpy8I GTNNAC 2 cut(s) 280, 628
Hpy99I CGWCG 3 cut(s) 278, 331, 824
HpyAV CCTTC 7 cut(s) 122, 141, 171, 272, 300, 682, 952
HpyCH4III ACNGT 4 cut(s) 343, 632, 729, 820
HpyCH4IV ACGT 3 cut(s) 236, 276, 956
HpyCH4V TGCA 2 cut(s) 685, 739
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 357, 366
HpyF3I CTNAG 5 cut(s) 38, 54, 455, 606, 704
HpySE526I ACGT 3 cut(s) 236, 276, 956
Hsp92II CATG 3 cut(s) 130, 739, 769
Kzo9I GATC 4 cut(s) 16, 214, 254, 391
LguI GCTCTTC 1 cut(s) 589
LmnI GCTCC 3 cut(s) 366, 502, 700
Lsp1109I GCAGC 3 cut(s) 105, 108, 915
LweI GCATC 3 cut(s) 279, 423, 908
MaeI CTAG 2 cut(s) 444, 564
MaeII ACGT 3 cut(s) 236, 276, 956
MalI GATC 4 cut(s) 18, 216, 256, 393
MbiI CCGCTC 1 cut(s) 357
MboI GATC 4 cut(s) 16, 214, 254, 391
MflI RGATCY 1 cut(s) 391
MhlI GDGCHC 5 cut(s) 252, 507, 712, 773, 828
MlyI GAGTC 2 cut(s) 43, 400
MmeI TCCRAC 1 cut(s) 249
MslI CAYNNNNRTG 2 cut(s) 275, 740
MspA1I CMGCKG 1 cut(s) 928
MspI CCGG 7 cut(s) 241, 283, 559, 829, 874, 922, 952
MspR9I CCNGG 4 cut(s) 242, 829, 874, 952
MvnI CGCG 1 cut(s) 791
MwoI GCNNNNNNNGC 3 cut(s) 105, 357, 366
NciI CCSGG 4 cut(s) 242, 829, 874, 952
NdeII GATC 4 cut(s) 16, 214, 254, 391
NlaIII CATG 3 cut(s) 130, 739, 769
NlaIV GGNNCC 5 cut(s) 141, 250, 251, 795, 833
NspI RCATGY 1 cut(s) 739
NspV TTCGAA 1 cut(s) 936
PaeR7I CTCGAG 1 cut(s) 408
PceI AGGCCT 1 cut(s) 200
PciSI GCTCTTC 1 cut(s) 589
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PfeI GAWTC 1 cut(s) 658
PinAI ACCGGT 1 cut(s) 282
PkrI GCNGC 5 cut(s) 95, 98, 359, 927, 930
Ple19I CGATCG 1 cut(s) 257
PleI GAGTC 2 cut(s) 42, 400
PpsI GAGTC 2 cut(s) 42, 400
Psp1406I AACGTT 1 cut(s) 236
PspN4I GGNNCC 5 cut(s) 141, 250, 251, 795, 833
PspOMI GGGCCC 1 cut(s) 248
PspPI GGNCC 8 cut(s) 139, 248, 249, 469, 793, 831, 865, 876
PspXI VCTCGAGB 1 cut(s) 408
PstNI CAGNNNCTG 1 cut(s) 703
PsuI RGATCY 1 cut(s) 391
PvuI CGATCG 1 cut(s) 257
RseI CAYNNNNRTG 2 cut(s) 275, 740
SapI GCTCTTC 1 cut(s) 589
SatI GCNGC 5 cut(s) 94, 97, 358, 926, 929
Sau3AI GATC 4 cut(s) 16, 214, 254, 391
Sau96I GGNCC 8 cut(s) 139, 248, 249, 469, 793, 831, 865, 876
SchI GAGTC 2 cut(s) 43, 400
ScrFI CCNGG 4 cut(s) 242, 829, 874, 952
SduI GDGCHC 5 cut(s) 252, 507, 712, 773, 828
SfaNI GCATC 3 cut(s) 279, 423, 908
Sfr274I CTCGAG 1 cut(s) 408
SfuI TTCGAA 1 cut(s) 936
SinI GGWCC 3 cut(s) 469, 793, 865
SlaI CTCGAG 1 cut(s) 408
SmiMI CAYNNNNRTG 2 cut(s) 275, 740
SmlI CTYRAG 2 cut(s) 43, 408
SmoI CTYRAG 2 cut(s) 43, 408
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 8 cut(s) 317, 357, 364, 477, 679, 791, 903, 926
SspMI CTAG 2 cut(s) 444, 564
StuI AGGCCT 1 cut(s) 200
StyD4I CCNGG 4 cut(s) 240, 827, 872, 950
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 4 cut(s) 343, 632, 729, 820
TaiI ACGT 3 cut(s) 239, 279, 959
TaqI TCGA 9 cut(s) 217, 273, 347, 396, 402, 409, 486, 822, 936
TaqII GACCGA 1 cut(s) 853
TauI GCSGC 2 cut(s) 360, 928
TfiI GAWTC 1 cut(s) 658
TscAI CASTG 1 cut(s) 717
TseI GCWGC 3 cut(s) 93, 96, 928
TspDTI ATGAA 1 cut(s) 438
TspGWI ACGGA 1 cut(s) 635
TspRI CASTG 1 cut(s) 717
VpaK11BI GGWCC 3 cut(s) 469, 793, 865
XbaI TCTAGA 1 cut(s) 443
XceI RCATGY 1 cut(s) 739
XhoI CTCGAG 1 cut(s) 408
XspI CTAG 2 cut(s) 444, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.