MD04G1061200.v1.1

Homeobox-leucine zipper protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
8078422 .. 8080537
2116 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1061200.v1.1.491

Sequence Viewer

Length: 933 bp
ATGATGGTTGAAAGAGAAGATTTGGGCCTGAGTCTCAGCTTGAATTTTCCTCAGACCCATAACAATCACAGCAACACCACCACCACCACCAGCAGCAGCAGCTTTCGGCTCAATCTGATGCCTTCTCTGCTCCCAACTTCTGCTTCTTCTACTTCTGGCTTTCTTCCCCAAAAGCCCCTCTGGAATGACTCCTTGCCTTCTTCAGATCTAAACTCCAACTCCGAGACTTACCGGGCCGGACCCCGATCGTTCCTTCGGGGCATCGACGTGAACCGGCTTCCTTCGACGGTCGACTGCGAAGACGAAGCGGGCGTTTCCTCCCCCAACAGCACCGTGTCGAGCGTGAGCGGCAAGCGGAGCGAGAGAGACGCCAACGGCGAGGATCTCGACCTCGAGAGGGACGGCTCTCGAGGCATCAGCGACGAAGAGGATGGCGAGGCGTGCAGGAAGAAGCTCAGGCTCTCCAAGGATCAGTCCGCCATTCTCGAGGAGAGCTTCAAGGAGCACAACACTCTCAACCCTAAGCAAAAATTGGCGTTGGCCAAACAGCTTGGGCTTCGGCCTAGACAAGTGGAAGTCTGGTTTCAGAACAGAAGAGCAAGAACAAAGTTGAAGCAAACAGAGGTGGACTGTGAGTTCTTGAAGAGATGCTGTGAGAATCTGACAGAGGAGAACAGGCGGTTGCAAAAGGAGGTTCAGGAGCTGAGAGCACTGAAACTTTCCCCGCAGTTCTACATGCAGATGACCCCACCCACAACACTCACCATGTGCCCTTCGTGTGAGCGTGTCGGGGTCCCACCCAACTCATCATCATCCGCTGCTGATCCCCGGCCCCATCTGCAGCCACGGCCTGGGCCCATCAACCCTTGGGCCTCCGCCACCACCATCCCCCACCGGCCGTCGCCGTTCGACGCCTTTCACGCCCGGTCGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

311

Amino Acids

34.59

Weight (kDa)

7.62

Isoelectric Point (pI)

63.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HD-ZIP_N PF04618 2 - 123 7.6e-32 HD-ZIP protein N terminus
Homeodomain PF00046 149 - 203 3.9e-16 Homeodomain
HALZ PF02183 205 - 239 2.4e-11 Homeobox associated leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013964)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16780
fragaria_vesca FvH4_5g19570
malus_domestica MD04G1061200.v1.1 MD06G1054800.v1.1
prunus_persica Prupe.5G064300_v2.0.a1
pyrus_communis pycom04g05500 pycom06g04580
rosa_chinensis RchiOBHm_Chr7g0204271
rosa_laevigata RLG00000003479
rosa_multiflora Rmu_sc0004975.1_g000005
rosa_roxburghii Rroxscaffold_3G00253270
rosa_rugosa Rorug07G0081500
rosa_samantha Rh7AG212100 Rh7BG210300 Rh7CG224200 Rh7DG219000
rosa_wichuraiana Rw7G018390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 851
AccBSI CCGCTC 1 cut(s) 348
AccI GTMKAC 1 cut(s) 291
AciI CCGC 8 cut(s) 308, 348, 355, 477, 679, 725, 816, 876
AclWI GGATC 3 cut(s) 390, 477, 818
AcoI YGGCCR 2 cut(s) 540, 896
AcsI RAATTY 1 cut(s) 43
AcuI CTGAAG 1 cut(s) 186
AcyI GRCGYC 2 cut(s) 369, 912
AdeI CACNNNGTG 1 cut(s) 768
AfiI CCNNNNNNNGG 2 cut(s) 397, 851
AgsI TTSAA 5 cut(s) 11, 43, 499, 613, 643
AjiI CACGTC 1 cut(s) 268
AjnI CCWGG 1 cut(s) 850
AjuI GAANNNNNNNTTGG 2 cut(s) 127, 159
AloI GAACNNNNNNTCC 2 cut(s) 620, 652
AluBI AGCT 6 cut(s) 39, 102, 454, 495, 550, 703
AluI AGCT 6 cut(s) 39, 102, 454, 495, 550, 703
Alw21I GWGCWC 2 cut(s) 507, 712
Alw26I GTCTC 3 cut(s) 38, 218, 360
AlwI GGATC 3 cut(s) 390, 477, 818
AlwNI CAGNNNCTG 1 cut(s) 703
Ama87I CYCGRG 3 cut(s) 392, 408, 485
AoxI GGCC 9 cut(s) 25, 234, 540, 560, 830, 848, 854, 870, 896
ApaI GGGCCC 1 cut(s) 858
ApeKI GCWGC 5 cut(s) 93, 96, 99, 818, 841
ApoI RAATTY 1 cut(s) 43
AspS9I GGNCC 8 cut(s) 25, 234, 239, 793, 831, 854, 855, 870
AsuC2I CCSGG 3 cut(s) 233, 829, 925
AsuHPI GGTGA 1 cut(s) 754
AvaI CYCGRG 3 cut(s) 392, 408, 485
AvaII GGWCC 2 cut(s) 239, 793
BaeGI GKGCMC 2 cut(s) 773, 858
BalI TGGCCA 1 cut(s) 542
BanII GRGCYC 1 cut(s) 858
BbsI GAAGAC 1 cut(s) 306
Bbv12I GWGCWC 2 cut(s) 507, 712
BbvI GCAGC 5 cut(s) 105, 108, 111, 805, 853
BccI CCATC 4 cut(s) 425, 843, 866, 893
BceAI ACGGC 5 cut(s) 391, 418, 863, 883, 889
BciT130I CCWGG 1 cut(s) 852
BcnI CCSGG 3 cut(s) 233, 829, 925
BcoDI GTCTC 3 cut(s) 38, 218, 360
BfaI CTAG 1 cut(s) 564
BfmI CTRYAG 1 cut(s) 839
BglII AGATCT 1 cut(s) 205
BisI GCNGC 6 cut(s) 94, 97, 100, 349, 819, 842
BlsI GCNGC 6 cut(s) 95, 98, 101, 350, 820, 843
Bme1390I CCNGG 4 cut(s) 233, 829, 852, 925
Bme18I GGWCC 2 cut(s) 239, 793
BmeT110I CYCGRG 3 cut(s) 392, 408, 485
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 8 cut(s) 25, 234, 239, 793, 831, 854, 855, 870
BmiI GGNNCC 5 cut(s) 241, 794, 795, 833, 856
BmrFI CCNGG 4 cut(s) 233, 829, 852, 925
BmsI GCATC 4 cut(s) 108, 270, 423, 638
BpiI GAAGAC 1 cut(s) 306
Bpu10I CCTNAGC 2 cut(s) 455, 522
BpuMI CCSGG 3 cut(s) 233, 829, 925
BsaHI GRCGYC 2 cut(s) 369, 912
BsaJI CCNNGG 5 cut(s) 465, 827, 845, 851, 866
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 397, 851
Bse118I RCCGGY 2 cut(s) 273, 894
BseBI CCWGG 1 cut(s) 852
BseDI CCNNGG 5 cut(s) 465, 827, 845, 851, 866
BseGI GGATG 3 cut(s) 436, 812, 885
BseLI CCNNNNNNNGG 2 cut(s) 397, 851
BseMII CTCAG 5 cut(s) 20, 49, 65, 469, 695
BseRI GAGGAG 2 cut(s) 503, 683
BseSI GKGCMC 2 cut(s) 773, 858
BseX3I CGGCCG 1 cut(s) 896
BseXI GCAGC 5 cut(s) 105, 108, 111, 805, 853
BsgI GTGCAG 1 cut(s) 463
Bsh1285I CGRYCG 4 cut(s) 248, 291, 899, 929
BshFI GGCC 9 cut(s) 27, 236, 542, 562, 832, 850, 856, 872, 898
BsiEI CGRYCG 4 cut(s) 248, 291, 899, 929
BsiHKAI GWGCWC 2 cut(s) 507, 712
BsiHKCI CYCGRG 3 cut(s) 392, 408, 485
BsiSI CCGG 6 cut(s) 232, 237, 274, 829, 895, 925
BslFI GGGAC 2 cut(s) 413, 779
BslI CCNNNNNNNGG 2 cut(s) 397, 851
BsmAI GTCTC 3 cut(s) 38, 218, 360
BsmBI CGTCTC 1 cut(s) 360
BsmFI GGGAC 2 cut(s) 413, 779
BsnI GGCC 9 cut(s) 27, 236, 542, 562, 832, 850, 856, 872, 898
BsoBI CYCGRG 3 cut(s) 392, 408, 485
Bsp120I GGGCCC 1 cut(s) 854
Bsp1286I GDGCHC 4 cut(s) 507, 712, 773, 858
Bsp143I GATC 5 cut(s) 205, 245, 382, 469, 823
BspACI CCGC 8 cut(s) 308, 348, 355, 477, 679, 725, 816, 876
BspANI GGCC 9 cut(s) 27, 236, 542, 562, 832, 850, 856, 872, 898
BspCNI CTCAG 5 cut(s) 21, 48, 64, 468, 696
BspLI GGNNCC 5 cut(s) 241, 794, 795, 833, 856
BspMAI CTGCAG 1 cut(s) 843
BspPI GGATC 3 cut(s) 390, 477, 818
BspQI GCTCTTC 1 cut(s) 589
BsrBI CCGCTC 1 cut(s) 348
BsrFI RCCGGY 2 cut(s) 273, 894
BssAI RCCGGY 2 cut(s) 273, 894
BssECI CCNNGG 5 cut(s) 465, 827, 845, 851, 866
BssMI GATC 5 cut(s) 205, 245, 382, 469, 823
BssNI GRCGYC 2 cut(s) 369, 912
BssT1I CCWWGG 2 cut(s) 465, 866
Bst2UI CCWGG 1 cut(s) 852
Bst4CI ACNGT 3 cut(s) 289, 334, 632
Bst6I CTCTTC 3 cut(s) 420, 589, 638
BstACI GRCGYC 2 cut(s) 369, 912
BstC8I GCNNGC 3 cut(s) 310, 353, 442
BstDEI CTNAG 6 cut(s) 29, 35, 51, 455, 522, 704
BstDSI CCRYGG 1 cut(s) 845
BstF5I GGATG 3 cut(s) 436, 812, 885
BstKTI GATC 5 cut(s) 208, 248, 385, 472, 826
BstMAI GTCTC 3 cut(s) 38, 218, 360
BstMBI GATC 5 cut(s) 205, 245, 382, 469, 823
BstMCI CGRYCG 4 cut(s) 248, 291, 899, 929
BstMWI GCNNNNNNNGC 9 cut(s) 99, 127, 348, 357, 411, 441, 838, 847, 920
BstNI CCWGG 1 cut(s) 852
BstNSI RCATGY 1 cut(s) 739
BstSCI CCNGG 4 cut(s) 231, 827, 850, 923
BstSFI CTRYAG 1 cut(s) 839
BstSLI GKGCMC 2 cut(s) 773, 858
BstV1I GCAGC 5 cut(s) 105, 108, 111, 805, 853
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 2 cut(s) 205, 382
BstYI RGATCY 2 cut(s) 205, 382
BstZI CGGCCG 1 cut(s) 896
BsuRI GGCC 9 cut(s) 27, 236, 542, 562, 832, 850, 856, 872, 898
BtgI CCRYGG 1 cut(s) 845
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 3 cut(s) 436, 812, 885
BtsIMutI CAGTG 1 cut(s) 710
Cac8I GCNNGC 3 cut(s) 310, 353, 442
CaiI CAGNNNCTG 1 cut(s) 703
Cfr10I RCCGGY 2 cut(s) 273, 894
Cfr13I GGNCC 8 cut(s) 25, 234, 239, 793, 831, 854, 855, 870
CseI GACGC 2 cut(s) 377, 920
CviAII CATG 2 cut(s) 736, 766
DdeI CTNAG 6 cut(s) 29, 35, 51, 455, 522, 704
DpnI GATC 5 cut(s) 207, 247, 384, 471, 825
DpnII GATC 5 cut(s) 205, 245, 382, 469, 823
DraIII CACNNNGTG 1 cut(s) 768
EaeI YGGCCR 2 cut(s) 540, 896
EagI CGGCCG 1 cut(s) 896
Eam1104I CTCTTC 3 cut(s) 420, 589, 638
EarI CTCTTC 3 cut(s) 420, 589, 638
EciI GGCGGA 2 cut(s) 466, 865
EclXI CGGCCG 1 cut(s) 896
Eco130I CCWWGG 2 cut(s) 465, 866
Eco24I GRGCYC 1 cut(s) 858
Eco47I GGWCC 2 cut(s) 239, 793
Eco52I CGGCCG 1 cut(s) 896
Eco57I CTGAAG 1 cut(s) 186
Eco88I CYCGRG 3 cut(s) 392, 408, 485
EcoO109I RGGNCCY 1 cut(s) 793
EcoRII CCWGG 1 cut(s) 850
EcoT14I CCWWGG 2 cut(s) 465, 866
EcoT38I GRGCYC 1 cut(s) 858
ErhI CCWWGG 2 cut(s) 465, 866
Esp3I CGTCTC 1 cut(s) 360
FaeI CATG 2 cut(s) 739, 769
FaiI YATR 3 cut(s) 60, 737, 767
FaqI GGGAC 2 cut(s) 413, 779
FatI CATG 2 cut(s) 735, 765
FauI CCCGC 2 cut(s) 301, 732
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 6 cut(s) 94, 97, 100, 349, 819, 842
FokI GGATG 3 cut(s) 443, 799, 872
FriOI GRGCYC 1 cut(s) 858
Fsp4HI GCNGC 6 cut(s) 94, 97, 100, 349, 819, 842
FspBI CTAG 1 cut(s) 564
GluI GCNGC 6 cut(s) 94, 97, 100, 349, 819, 842
HaeIII GGCC 9 cut(s) 27, 236, 542, 562, 832, 850, 856, 872, 898
HapII CCGG 6 cut(s) 232, 237, 274, 829, 895, 925
HgaI GACGC 2 cut(s) 377, 920
Hin1I GRCGYC 2 cut(s) 369, 912
Hin1II CATG 2 cut(s) 739, 769
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 3 cut(s) 31, 188, 658
HpaII CCGG 6 cut(s) 232, 237, 274, 829, 895, 925
HphI GGTGA 1 cut(s) 754
Hpy166II GTNNAC 3 cut(s) 271, 292, 628
Hpy188I TCNGA 6 cut(s) 54, 117, 205, 223, 588, 663
Hpy188III TCNNGA 7 cut(s) 181, 386, 394, 408, 485, 640, 698
Hpy8I GTNNAC 3 cut(s) 271, 292, 628
Hpy99I CGWCG 5 cut(s) 269, 289, 425, 904, 914
HpyAV CCTTC 5 cut(s) 132, 207, 263, 291, 783
HpyCH4III ACNGT 3 cut(s) 289, 334, 632
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 4 cut(s) 444, 685, 739, 841
HpyF10VI GCNNNNNNNGC 9 cut(s) 99, 127, 348, 357, 411, 441, 838, 847, 920
HpyF3I CTNAG 6 cut(s) 29, 35, 51, 455, 522, 704
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 2 cut(s) 369, 912
Hsp92II CATG 2 cut(s) 739, 769
KflI GGGWCCC 1 cut(s) 793
Kzo9I GATC 5 cut(s) 205, 245, 382, 469, 823
LguI GCTCTTC 1 cut(s) 589
LmnI GCTCC 4 cut(s) 135, 357, 502, 700
Lsp1109I GCAGC 5 cut(s) 105, 108, 111, 805, 853
LweI GCATC 4 cut(s) 108, 270, 423, 638
MaeI CTAG 1 cut(s) 564
MaeII ACGT 1 cut(s) 267
MalI GATC 5 cut(s) 207, 247, 384, 471, 825
MbiI CCGCTC 1 cut(s) 348
MboI GATC 5 cut(s) 205, 245, 382, 469, 823
MboII GAAGA 9 cut(s) 29, 138, 155, 192, 311, 437, 460, 606, 655
MflI RGATCY 2 cut(s) 205, 382
MhlI GDGCHC 4 cut(s) 507, 712, 773, 858
MlsI TGGCCA 1 cut(s) 542
MluCI AATT 2 cut(s) 43, 530
MluNI TGGCCA 1 cut(s) 542
MlyI GAGTC 2 cut(s) 40, 182
MmeI TCCRAC 1 cut(s) 240
Mox20I TGGCCA 1 cut(s) 542
MscI TGGCCA 1 cut(s) 542
MslI CAYNNNNRTG 2 cut(s) 266, 740
Msp20I TGGCCA 1 cut(s) 542
MspA1I CMGCKG 1 cut(s) 818
MspI CCGG 6 cut(s) 232, 237, 274, 829, 895, 925
MspR9I CCNGG 4 cut(s) 233, 829, 852, 925
MvaI CCWGG 1 cut(s) 852
MwoI GCNNNNNNNGC 9 cut(s) 99, 127, 348, 357, 411, 441, 838, 847, 920
NciI CCSGG 3 cut(s) 233, 829, 925
NdeII GATC 5 cut(s) 205, 245, 382, 469, 823
NlaIII CATG 2 cut(s) 739, 769
NlaIV GGNNCC 5 cut(s) 241, 794, 795, 833, 856
NspI RCATGY 1 cut(s) 739
PaeR7I CTCGAG 3 cut(s) 392, 408, 485
PciSI GCTCTTC 1 cut(s) 589
PcsI WCGNNNNNNNCGW 2 cut(s) 309, 375
PfeI GAWTC 1 cut(s) 658
PflMI CCANNNNNTGG 1 cut(s) 851
PkrI GCNGC 6 cut(s) 95, 98, 101, 350, 820, 843
Ple19I CGATCG 1 cut(s) 248
PleI GAGTC 2 cut(s) 39, 182
PpsI GAGTC 2 cut(s) 39, 182
PpuMI RGGWCCY 1 cut(s) 793
Psp5II RGGWCCY 1 cut(s) 793
Psp6I CCWGG 1 cut(s) 850
PspGI CCWGG 1 cut(s) 850
PspN4I GGNNCC 5 cut(s) 241, 794, 795, 833, 856
PspOMI GGGCCC 1 cut(s) 854
PspPI GGNCC 8 cut(s) 25, 234, 239, 793, 831, 854, 855, 870
PspPPI RGGWCCY 1 cut(s) 793
PstI CTGCAG 1 cut(s) 843
PstNI CAGNNNCTG 1 cut(s) 703
PsuI RGATCY 2 cut(s) 205, 382
PvuI CGATCG 1 cut(s) 248
RseI CAYNNNNRTG 2 cut(s) 266, 740
SalI GTCGAC 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 589
SatI GCNGC 6 cut(s) 94, 97, 100, 349, 819, 842
Sau3AI GATC 5 cut(s) 205, 245, 382, 469, 823
Sau96I GGNCC 8 cut(s) 25, 234, 239, 793, 831, 854, 855, 870
SchI GAGTC 2 cut(s) 40, 182
ScrFI CCNGG 4 cut(s) 233, 829, 852, 925
SduI GDGCHC 4 cut(s) 507, 712, 773, 858
SfaNI GCATC 4 cut(s) 108, 270, 423, 638
SfcI CTRYAG 1 cut(s) 839
Sfr274I CTCGAG 3 cut(s) 392, 408, 485
SinI GGWCC 2 cut(s) 239, 793
SlaI CTCGAG 3 cut(s) 392, 408, 485
SmiMI CAYNNNNRTG 2 cut(s) 266, 740
SmlI CTYRAG 3 cut(s) 392, 408, 485
SmoI CTYRAG 3 cut(s) 392, 408, 485
Sse9I AATT 2 cut(s) 43, 530
SsiI CCGC 8 cut(s) 308, 348, 355, 477, 679, 725, 816, 876
SspMI CTAG 1 cut(s) 564
StyD4I CCNGG 4 cut(s) 231, 827, 850, 923
StyI CCWWGG 2 cut(s) 465, 866
TaaI ACNGT 3 cut(s) 289, 334, 632
TaiI ACGT 1 cut(s) 270
TaqI TCGA 9 cut(s) 264, 284, 291, 338, 387, 393, 409, 486, 909
TasI AATT 2 cut(s) 43, 530
TauI GCSGC 1 cut(s) 351
TfiI GAWTC 1 cut(s) 658
TscAI CASTG 1 cut(s) 717
TseI GCWGC 5 cut(s) 93, 96, 99, 818, 841
TspRI CASTG 1 cut(s) 717
Van91I CCANNNNNTGG 1 cut(s) 851
VpaK11BI GGWCC 2 cut(s) 239, 793
XapI RAATTY 1 cut(s) 43
XceI RCATGY 1 cut(s) 739
XhoI CTCGAG 3 cut(s) 392, 408, 485
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.