No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G17250 AT4G17250 AT4G17250 AT5G47580 |
| fragaria_vesca | FvH4_3g26880 |
| malus_domestica | MD06G1060700.v1.1 |
| prunus_persica | Prupe.5G071700_v2.0.a1 Prupe.5G071900_v2.0.a1 |
| pyrus_communis | pycom06g05020 pycom06g05070 |
| rosa_chinensis | RchiOBHm_Chr7g0202951 RchiOBHm_Chr7g0202961 |
| rosa_laevigata | RLG00000003561 RLG00000003563 |
| rosa_multiflora | Rmu_sc0007263.1_g000002 Rmu_sc0008159.1_g000003 Rmu_sc0008159.1_g000011 Rmu_sc0013377.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00254140 Rroxscaffold_3G00254160 |
| rosa_rugosa | Rorug07G0074000 |
| rosa_samantha | Rh7AG202100 Rh7BG202200 Rh7CG213200 Rh7DG209000 Rh7DG209200 |
| rosa_wichuraiana | Rw7G017660 Rw7G017670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 135 |
| AccI | GTMKAC | 2 cut(s) | 584, 2079 |
| AciI | CCGC | 1 cut(s) | 2036 |
| AclWI | GGATC | 2 cut(s) | 231, 1683 |
| AcoI | YGGCCR | 2 cut(s) | 852, 1296 |
| AcsI | RAATTY | 2 cut(s) | 161, 632 |
| AcuI | CTGAAG | 1 cut(s) | 759 |
| AdeI | CACNNNGTG | 1 cut(s) | 2116 |
| AfaI | GTAC | 5 cut(s) | 415, 542, 1847, 1877, 2194 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 62, 320, 750, 1468, 1812 |
| AgeI | ACCGGT | 1 cut(s) | 1053 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 853, 885 |
| Alw21I | GWGCWC | 2 cut(s) | 537, 1356 |
| Alw26I | GTCTC | 4 cut(s) | 838, 977, 1898, 2109 |
| AlwI | GGATC | 2 cut(s) | 231, 1683 |
| AoxI | GGCC | 5 cut(s) | 852, 1296, 1431, 1458, 1814 |
| ApaI | GGGCCC | 1 cut(s) | 1462 |
| ApeKI | GCWGC | 9 cut(s) | 77, 80, 273, 276, 845, 1023, 1026, 1622, 1832 |
| ApoI | RAATTY | 2 cut(s) | 161, 632 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1187, 1219 |
| AsiGI | ACCGGT | 1 cut(s) | 1053 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1395 |
| AspS9I | GGNCC | 5 cut(s) | 748, 1458, 1459, 1815, 2151 |
| AsuC2I | CCSGG | 1 cut(s) | 772 |
| AsuHPI | GGTGA | 4 cut(s) | 181, 373, 1162, 2038 |
| AsuII | TTCGAA | 2 cut(s) | 1575, 1681 |
| AsuNHI | GCTAGC | 1 cut(s) | 1103 |
| AvaII | GGWCC | 2 cut(s) | 748, 2151 |
| BaeGI | GKGCMC | 1 cut(s) | 1462 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 385, 418 |
| BalI | TGGCCA | 2 cut(s) | 854, 1298 |
| BanI | GGYRCC | 1 cut(s) | 135 |
| BanII | GRGCYC | 3 cut(s) | 537, 1356, 1462 |
| BbsI | GAAGAC | 1 cut(s) | 274 |
| Bbv12I | GWGCWC | 2 cut(s) | 537, 1356 |
| BbvI | GCAGC | 9 cut(s) | 64, 92, 285, 288, 832, 1010, 1038, 1609, 1844 |
| BceAI | ACGGC | 4 cut(s) | 34, 142, 375, 1983 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 265, 299 |
| BciVI | GTATCC | 2 cut(s) | 413, 1776 |
| BcnI | CCSGG | 1 cut(s) | 772 |
| BcoDI | GTCTC | 4 cut(s) | 838, 977, 1898, 2109 |
| BfaI | CTAG | 7 cut(s) | 243, 374, 657, 779, 830, 1104, 2219 |
| BfmI | CTRYAG | 4 cut(s) | 78, 846, 1024, 1623 |
| BfuI | GTATCC | 2 cut(s) | 413, 1776 |
| BglII | AGATCT | 2 cut(s) | 340, 622 |
| Bme1390I | CCNGG | 1 cut(s) | 772 |
| Bme18I | GGWCC | 2 cut(s) | 748, 2151 |
| BmgT120I | GGNCC | 5 cut(s) | 748, 1458, 1459, 1815, 2151 |
| BmiI | GGNNCC | 4 cut(s) | 137, 606, 862, 1460 |
| BmrFI | CCNGG | 1 cut(s) | 772 |
| BmrI | ACTGGG | 1 cut(s) | 2182 |
| BmsI | GCATC | 5 cut(s) | 999, 1050, 1252, 1943, 2078 |
| BmtI | GCTAGC | 1 cut(s) | 1107 |
| BmuI | ACTGGG | 1 cut(s) | 2182 |
| BpiI | GAAGAC | 1 cut(s) | 274 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1635, 1667 |
| BpmI | CTGGAG | 2 cut(s) | 855, 1458 |
| Bpu10I | CCTNAGC | 1 cut(s) | 609 |
| Bpu14I | TTCGAA | 2 cut(s) | 1575, 1681 |
| BpuEI | CTTGAG | 7 cut(s) | 423, 508, 521, 872, 1508, 1812, 2090 |
| BpuMI | CCSGG | 1 cut(s) | 772 |
| BsaAI | YACGTR | 1 cut(s) | 1283 |
| BsaBI | GATNNNNATC | 1 cut(s) | 725 |
| BsaJI | CCNNGG | 3 cut(s) | 744, 770, 1015 |
| BsaWI | WCCGGW | 3 cut(s) | 750, 1053, 1208 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 524, 554, 853, 883, 1895, 1925 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 62, 320, 750, 1468, 1812 |
| Bse118I | RCCGGY | 1 cut(s) | 1053 |
| Bse1I | ACTGG | 3 cut(s) | 706, 1817, 2188 |
| Bse3DI | GCAATG | 3 cut(s) | 796, 1074, 2046 |
| Bse8I | GATNNNNATC | 1 cut(s) | 725 |
| BseDI | CCNNGG | 3 cut(s) | 744, 770, 1015 |
| BseGI | GGATG | 5 cut(s) | 56, 645, 1014, 1958, 2176 |
| BseJI | GATNNNNATC | 1 cut(s) | 725 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 62, 320, 750, 1468, 1812 |
| BseMI | GCAATG | 3 cut(s) | 796, 1074, 2046 |
| BseMII | CTCAG | 4 cut(s) | 283, 677, 969, 1191 |
| BseNI | ACTGG | 3 cut(s) | 706, 1817, 2188 |
| BseRI | GAGGAG | 4 cut(s) | 335, 1271, 1274, 1916 |
| BseSI | GKGCMC | 1 cut(s) | 1462 |
| BseXI | GCAGC | 9 cut(s) | 64, 92, 285, 288, 832, 1010, 1038, 1609, 1844 |
| BseYI | CCCAGC | 1 cut(s) | 511 |
| BshFI | GGCC | 5 cut(s) | 854, 1298, 1433, 1460, 1816 |
| BshNI | GGYRCC | 1 cut(s) | 135 |
| BshTI | ACCGGT | 1 cut(s) | 1053 |
| BsiHKAI | GWGCWC | 2 cut(s) | 537, 1356 |
| BsiSI | CCGG | 5 cut(s) | 133, 751, 772, 1054, 1209 |
| BslFI | GGGAC | 3 cut(s) | 494, 978, 2170 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 62, 320, 750, 1468, 1812 |
| BsmAI | GTCTC | 4 cut(s) | 838, 977, 1898, 2109 |
| BsmFI | GGGAC | 3 cut(s) | 494, 978, 2170 |
| BsnI | GGCC | 5 cut(s) | 854, 1298, 1433, 1460, 1816 |
| Bsp119I | TTCGAA | 2 cut(s) | 1575, 1681 |
| Bsp120I | GGGCCC | 1 cut(s) | 1458 |
| Bsp1286I | GDGCHC | 3 cut(s) | 537, 1356, 1462 |
| Bsp19I | CCATGG | 2 cut(s) | 744, 1015 |
| BspACI | CCGC | 1 cut(s) | 2036 |
| BspANI | GGCC | 5 cut(s) | 854, 1298, 1433, 1460, 1816 |
| BspCNI | CTCAG | 4 cut(s) | 282, 676, 970, 1192 |
| BspHI | TCATGA | 1 cut(s) | 348 |
| BspLI | GGNNCC | 4 cut(s) | 137, 606, 862, 1460 |
| BspMAI | CTGCAG | 4 cut(s) | 82, 850, 1028, 1627 |
| BspOI | GCTAGC | 1 cut(s) | 1107 |
| BspPI | GGATC | 2 cut(s) | 231, 1683 |
| BspQI | GCTCTTC | 1 cut(s) | 1503 |
| BspT104I | TTCGAA | 2 cut(s) | 1575, 1681 |
| BspT107I | GGYRCC | 1 cut(s) | 135 |
| BsrDI | GCAATG | 3 cut(s) | 796, 1074, 2046 |
| BsrFI | RCCGGY | 1 cut(s) | 1053 |
| BsrI | ACTGG | 3 cut(s) | 706, 1817, 2188 |
| BssAI | RCCGGY | 1 cut(s) | 1053 |
| BssECI | CCNNGG | 3 cut(s) | 744, 770, 1015 |
| BssNAI | GTATAC | 1 cut(s) | 585 |
| BssT1I | CCWWGG | 2 cut(s) | 744, 1015 |
| Bst1107I | GTATAC | 1 cut(s) | 585 |
| Bst4CI | ACNGT | 7 cut(s) | 140, 295, 508, 865, 1086, 1129, 1292 |
| Bst6I | CTCTTC | 4 cut(s) | 542, 592, 1503, 1572 |
| BstBAI | YACGTR | 1 cut(s) | 1283 |
| BstBI | TTCGAA | 2 cut(s) | 1575, 1681 |
| BstDEI | CTNAG | 7 cut(s) | 26, 269, 609, 663, 978, 1200, 1585 |
| BstDSI | CCRYGG | 2 cut(s) | 744, 1015 |
| BstF5I | GGATG | 5 cut(s) | 56, 645, 1014, 1958, 2176 |
| BstMAI | GTCTC | 4 cut(s) | 838, 977, 1898, 2109 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 851, 1519 |
| BstNSI | RCATGY | 1 cut(s) | 2095 |
| BstSCI | CCNGG | 1 cut(s) | 770 |
| BstSFI | CTRYAG | 4 cut(s) | 78, 846, 1024, 1623 |
| BstSLI | GKGCMC | 1 cut(s) | 1462 |
| BstV1I | GCAGC | 9 cut(s) | 64, 92, 285, 288, 832, 1010, 1038, 1609, 1844 |
| BstV2I | GAAGAC | 1 cut(s) | 274 |
| BstX2I | RGATCY | 4 cut(s) | 223, 340, 622, 1675 |
| BstYI | RGATCY | 4 cut(s) | 223, 340, 622, 1675 |
| BstZ17I | GTATAC | 1 cut(s) | 585 |
| BsuI | GTATCC | 2 cut(s) | 413, 1776 |
| BsuRI | GGCC | 5 cut(s) | 854, 1298, 1433, 1460, 1816 |
| BtgI | CCRYGG | 2 cut(s) | 744, 1015 |
| BtsCI | GGATG | 5 cut(s) | 56, 645, 1014, 1958, 2176 |
| BtsI | GCAGTG | 4 cut(s) | 578, 855, 900, 2010 |
| CciI | TCATGA | 1 cut(s) | 348 |
| Cfr10I | RCCGGY | 1 cut(s) | 1053 |
| Cfr13I | GGNCC | 5 cut(s) | 748, 1458, 1459, 1815, 2151 |
| CseI | GACGC | 3 cut(s) | 196, 268, 2010 |
| Csp6I | GTAC | 5 cut(s) | 414, 541, 1846, 1876, 2193 |
| CspAI | ACCGGT | 1 cut(s) | 1053 |
| CviQI | GTAC | 5 cut(s) | 414, 541, 1846, 1876, 2193 |
| DdeI | CTNAG | 7 cut(s) | 26, 269, 609, 663, 978, 1200, 1585 |
| DraIII | CACNNNGTG | 1 cut(s) | 2116 |
| EaeI | YGGCCR | 2 cut(s) | 852, 1296 |
| Eam1104I | CTCTTC | 4 cut(s) | 542, 592, 1503, 1572 |
| EarI | CTCTTC | 4 cut(s) | 542, 592, 1503, 1572 |
| Ecl136II | GAGCTC | 2 cut(s) | 535, 1354 |
| Eco130I | CCWWGG | 2 cut(s) | 744, 1015 |
| Eco24I | GRGCYC | 3 cut(s) | 537, 1356, 1462 |
| Eco32I | GATATC | 1 cut(s) | 1069 |
| Eco47I | GGWCC | 2 cut(s) | 748, 2151 |
| Eco53kI | GAGCTC | 2 cut(s) | 535, 1354 |
| Eco57I | CTGAAG | 1 cut(s) | 759 |
| EcoICRI | GAGCTC | 2 cut(s) | 535, 1354 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1459 |
| EcoRV | GATATC | 1 cut(s) | 1069 |
| EcoT14I | CCWWGG | 2 cut(s) | 744, 1015 |
| EcoT22I | ATGCAT | 3 cut(s) | 1793, 2046, 2093 |
| EcoT38I | GRGCYC | 3 cut(s) | 537, 1356, 1462 |
| ErhI | CCWWGG | 2 cut(s) | 744, 1015 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 243, 275, 512, 544 |
| FaqI | GGGAC | 3 cut(s) | 494, 978, 2170 |
| FblI | GTMKAC | 2 cut(s) | 584, 2079 |
| FokI | GGATG | 5 cut(s) | 43, 652, 1021, 1965, 2163 |
| FriOI | GRGCYC | 3 cut(s) | 537, 1356, 1462 |
| FspBI | CTAG | 7 cut(s) | 243, 374, 657, 779, 830, 1104, 2219 |
| GsaI | CCCAGC | 1 cut(s) | 515 |
| GsuI | CTGGAG | 2 cut(s) | 855, 1458 |
| HaeIII | GGCC | 5 cut(s) | 854, 1298, 1433, 1460, 1816 |
| HapII | CCGG | 5 cut(s) | 133, 751, 772, 1054, 1209 |
| HgaI | GACGC | 3 cut(s) | 196, 268, 2010 |
| HincII | GTYRAC | 3 cut(s) | 394, 816, 1567 |
| HindII | GTYRAC | 3 cut(s) | 394, 816, 1567 |
| HindIII | AAGCTT | 2 cut(s) | 611, 1034 |
| HpaI | GTTAAC | 1 cut(s) | 394 |
| HpaII | CCGG | 5 cut(s) | 133, 751, 772, 1054, 1209 |
| HphI | GGTGA | 4 cut(s) | 181, 373, 1162, 2038 |
| Hpy188I | TCNGA | 6 cut(s) | 115, 627, 802, 1326, 1782, 1939 |
| Hpy99I | CGWCG | 2 cut(s) | 1418, 2026 |
| HpyAV | CCTTC | 8 cut(s) | 324, 588, 1183, 1244, 1385, 1472, 1589, 2190 |
| HpyCH4III | ACNGT | 7 cut(s) | 140, 295, 508, 865, 1086, 1129, 1292 |
| HpyCH4IV | ACGT | 3 cut(s) | 991, 1282, 1671 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 851, 1519 |
| HpyF3I | CTNAG | 7 cut(s) | 26, 269, 609, 663, 978, 1200, 1585 |
| HpySE526I | ACGT | 3 cut(s) | 991, 1282, 1671 |
| KspAI | GTTAAC | 1 cut(s) | 394 |
| LguI | GCTCTTC | 1 cut(s) | 1503 |
| LmnI | GCTCC | 4 cut(s) | 419, 532, 874, 1017 |
| Lsp1109I | GCAGC | 9 cut(s) | 64, 92, 285, 288, 832, 1010, 1038, 1609, 1844 |
| LweI | GCATC | 5 cut(s) | 999, 1050, 1252, 1943, 2078 |
| MaeI | CTAG | 7 cut(s) | 243, 374, 657, 779, 830, 1104, 2219 |
| MaeII | ACGT | 3 cut(s) | 991, 1282, 1671 |
| MaeIII | GTNAC | 6 cut(s) | 323, 331, 685, 774, 1471, 1996 |
| MfeI | CAATTG | 1 cut(s) | 407 |
| MflI | RGATCY | 4 cut(s) | 223, 340, 622, 1675 |
| MhlI | GDGCHC | 3 cut(s) | 537, 1356, 1462 |
| MlsI | TGGCCA | 2 cut(s) | 854, 1298 |
| MluCI | AATT | 5 cut(s) | 161, 304, 407, 632, 1232 |
| MluNI | TGGCCA | 2 cut(s) | 854, 1298 |
| MlyI | GAGTC | 5 cut(s) | 5, 1211, 1772, 1819, 1900 |
| MmeI | TCCRAC | 1 cut(s) | 1304 |
| Mox20I | TGGCCA | 2 cut(s) | 854, 1298 |
| Mph1103I | ATGCAT | 3 cut(s) | 1793, 2046, 2093 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1395 |
| MscI | TGGCCA | 2 cut(s) | 854, 1298 |
| MseI | TTAA | 5 cut(s) | 393, 615, 944, 1049, 1725 |
| MslI | CAYNNNNRTG | 2 cut(s) | 236, 296 |
| Msp20I | TGGCCA | 2 cut(s) | 854, 1298 |
| MspA1I | CMGCKG | 1 cut(s) | 845 |
| MspI | CCGG | 5 cut(s) | 133, 751, 772, 1054, 1209 |
| MspR9I | CCNGG | 1 cut(s) | 772 |
| MunI | CAATTG | 1 cut(s) | 407 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 851, 1519 |
| NciI | CCSGG | 1 cut(s) | 772 |
| NcoI | CCATGG | 2 cut(s) | 744, 1015 |
| NheI | GCTAGC | 1 cut(s) | 1103 |
| NlaIV | GGNNCC | 4 cut(s) | 137, 606, 862, 1460 |
| NmuCI | GTSAC | 2 cut(s) | 331, 774 |
| NsiI | ATGCAT | 3 cut(s) | 1793, 2046, 2093 |
| NspI | RCATGY | 1 cut(s) | 2095 |
| NspV | TTCGAA | 2 cut(s) | 1575, 1681 |
| PaeI | GCATGC | 1 cut(s) | 2095 |
| PagI | TCATGA | 1 cut(s) | 348 |
| PciSI | GCTCTTC | 1 cut(s) | 1503 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 291, 1288 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1395 |
| PfeI | GAWTC | 7 cut(s) | 370, 797, 1146, 1184, 1396, 1851, 1880 |
| PinAI | ACCGGT | 1 cut(s) | 1053 |
| PleI | GAGTC | 5 cut(s) | 5, 1210, 1771, 1819, 1900 |
| PpsI | GAGTC | 5 cut(s) | 5, 1210, 1771, 1819, 1900 |
| Ppu21I | YACGTR | 1 cut(s) | 1283 |
| Psp124BI | GAGCTC | 2 cut(s) | 537, 1356 |
| PspFI | CCCAGC | 1 cut(s) | 511 |
| PspN4I | GGNNCC | 4 cut(s) | 137, 606, 862, 1460 |
| PspOMI | GGGCCC | 1 cut(s) | 1458 |
| PspPI | GGNCC | 5 cut(s) | 748, 1458, 1459, 1815, 2151 |
| PstI | CTGCAG | 4 cut(s) | 82, 850, 1028, 1627 |
| PsuI | RGATCY | 4 cut(s) | 223, 340, 622, 1675 |
| PvuII | CAGCTG | 1 cut(s) | 845 |
| RsaI | GTAC | 5 cut(s) | 415, 542, 1847, 1877, 2194 |
| RsaNI | GTAC | 5 cut(s) | 414, 541, 1846, 1876, 2193 |
| RseI | CAYNNNNRTG | 2 cut(s) | 236, 296 |
| SacI | GAGCTC | 2 cut(s) | 537, 1356 |
| SapI | GCTCTTC | 1 cut(s) | 1503 |
| SaqAI | TTAA | 5 cut(s) | 393, 615, 944, 1049, 1725 |
| Sau96I | GGNCC | 5 cut(s) | 748, 1458, 1459, 1815, 2151 |
| SchI | GAGTC | 5 cut(s) | 5, 1211, 1772, 1819, 1900 |
| ScrFI | CCNGG | 1 cut(s) | 772 |
| SduI | GDGCHC | 3 cut(s) | 537, 1356, 1462 |
| SfaNI | GCATC | 5 cut(s) | 999, 1050, 1252, 1943, 2078 |
| SfcI | CTRYAG | 4 cut(s) | 78, 846, 1024, 1623 |
| SfuI | TTCGAA | 2 cut(s) | 1575, 1681 |
| SinI | GGWCC | 2 cut(s) | 748, 2151 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 236, 296 |
| SmlI | CTYRAG | 7 cut(s) | 438, 487, 536, 887, 1523, 1827, 2069 |
| SmoI | CTYRAG | 7 cut(s) | 438, 487, 536, 887, 1523, 1827, 2069 |
| SphI | GCATGC | 1 cut(s) | 2095 |
| Sse9I | AATT | 5 cut(s) | 161, 304, 407, 632, 1232 |
| SsiI | CCGC | 1 cut(s) | 2036 |
| SspMI | CTAG | 7 cut(s) | 243, 374, 657, 779, 830, 1104, 2219 |
| SstI | GAGCTC | 2 cut(s) | 537, 1356 |
| StyD4I | CCNGG | 1 cut(s) | 770 |
| StyI | CCWWGG | 2 cut(s) | 744, 1015 |
| TaaI | ACNGT | 7 cut(s) | 140, 295, 508, 865, 1086, 1129, 1292 |
| TaiI | ACGT | 3 cut(s) | 994, 1285, 1674 |
| TaqI | TCGA | 5 cut(s) | 1139, 1399, 1575, 1593, 1681 |
| TasI | AATT | 5 cut(s) | 161, 304, 407, 632, 1232 |
| TatI | WGTACW | 1 cut(s) | 540 |
| TauI | GCSGC | 1 cut(s) | 2039 |
| TfiI | GAWTC | 7 cut(s) | 370, 797, 1146, 1184, 1396, 1851, 1880 |
| Tru1I | TTAA | 5 cut(s) | 393, 615, 944, 1049, 1725 |
| Tru9I | TTAA | 5 cut(s) | 393, 615, 944, 1049, 1725 |
| TseFI | GTSAC | 2 cut(s) | 331, 774 |
| TseI | GCWGC | 9 cut(s) | 77, 80, 273, 276, 845, 1023, 1026, 1622, 1832 |
| Tsp45I | GTSAC | 2 cut(s) | 331, 774 |
| TspDTI | ATGAA | 9 cut(s) | 365, 644, 1111, 1154, 1363, 1808, 1886, 2000, 2145 |
| TspGWI | ACGGA | 1 cut(s) | 1106 |
| VpaK11BI | GGWCC | 2 cut(s) | 748, 2151 |
| XapI | RAATTY | 2 cut(s) | 161, 632 |
| XceI | RCATGY | 1 cut(s) | 2095 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 879, 1452 |
| XmiI | GTMKAC | 2 cut(s) | 584, 2079 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1395 |
| XspI | CTAG | 7 cut(s) | 243, 374, 657, 779, 830, 1104, 2219 |
| Zsp2I | ATGCAT | 3 cut(s) | 1793, 2046, 2093 |