Rmu_sc0008159.1_g000003

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008159.1
Physical Location & Seq
Forward (+)
5565 .. 7835
2271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008159.1_g000003.1.cds

Sequence Viewer

Length: 2271 bp
atgaaaatcggctgcgacgtcgatgggaacctcaaccagggaaagttcagtgcccctatgccttggattgggatttatgtaacagcagcatccttggcatgtctagttacaatggctgcagatgtcatccatggcattcgtcaccggaaactctggttcccttgcaggtatttctcaatcaatgcaacttctctgaccctgatagctgtggcaatcaaattgtcagtggatctaaacaccgctatgcctagccgccaggatcagctcgcaaagctcagcagctcggtcttggtctgcacagtaatgggtaactctatgccttcccttggagctatggaaaatgaagaactattcatgaatgttatggcttttggaatattggtagttacccttattgtgaatatctgcatccaattagctactggtgcaatctttgttttctggaaggagcatgcttgtgttatgttcatcatgcttgttttgcttatcatgctgtgtttctctgctttaactgttccgatttgtaagcgttacttagagcacaagtacaacaagaggtatcaattagctctgaaagagagttcaaatgaaactggtaaaagacttgtttgcaaaattagagaggatttgatgaaatattggatgatggctcatacctctagcccccagtttgttatgggtcgatcagcgacatgcacagcttctggagcaatctgtctcttgagtttcctgattctagcagaggccatacttcgaacttacttgatgccctggtcatttaaattttgtagcggtgagtctgactacaagtggtcgaccactttagttcttgttacacagacagtagcagtagcagtaggaacaattgctccagcatctagatggttcatcgccataaacttcaggtgtgcaaaaagaggaaatgtaacctacaaaggagaatttaaagtagaaaagtactggatccagggactagtggagttgaaagactgtcccttaactttaagaatcagaagcaggcactgcaggaaacttgctcatgacacaaaaaataaacttttggacttgtgtattggaatgcagaaaggaaatgtcataatgagcaaagcaattcggcttatttccattttctttgtaagcaagatcttgatatgctgcgacttctgcaaggagtggaagaagaatttcaaatgcaacactgtttccaacgacttgagcttagagtcatcacaatcgagctcaagcttagaacatcttacctgttatgttttgcatcttgaaggggaggatgcattagttgagcacatgacgaaaagcaattgtgatgctactgatcattggttccagaggggaaggagaagtgagcctaaacatctgatcaaattgttggagaaatcgacattttcacaaggatttaaaggagtagcagctttcgacaacgacaaagttccctctctagatggtgaagaacctccaaattgttgggctctaccagttgcaacactagccagtattgctcttgcacttccaaacatcagcagttcttcgataaaagggttaatgcgtggtgtaaacgaagggctcatgtacataaatttcattgaaaatcacctggaaagtaaagatcttaccaacattaggaaggcagcaacccatgtctggctaggagtcgatctctatcacacatggctggatgtggatctccgtagactgtcacttcaggggaaaagctcagaggaaatacttgaagaactttctgaaactgcaaaggtcaaattcgaagaatctaaaaagagccaaacagctataaatgcatgtatcagagatactccttcgaaatggcccgtaaaggaattagctgctaattccatgtataggatatgtcaaaccattctgctaaaccatagaagcagcatggatcaaacagatgaaagactatttgaagtactgacagtcatgatcgctgacattcttggtgcctgtctcactaactttcaggaagttataagcacaaagtgtttgaacagcaccattgaagatagggcgaaaagtgtgaggcatgcagttcacatgctaggggaaactgaaaagatactgaatattctagaccagagcattccccgaagtttggaacctcaccaaatttcatcgattgatgagtggcgtttgtcactcaaaagggaagacccttgggccttcccttcttcatcttcatcagagaatgacggagcctctcctgtttcaaatgacttctacctgagcattgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

756

Amino Acids

84.97

Weight (kDa)

8.33

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2006
AatII GACGTC 1 cut(s) 21
Acc36I ACCTGC 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 1976
AccI GTMKAC 2 cut(s) 815, 1708
AciI CCGC 3 cut(s) 240, 253, 792
AclWI GGATC 6 cut(s) 237, 267, 958, 971, 1707, 1926
AcsI RAATTY 6 cut(s) 782, 941, 1183, 1594, 1775, 2142
AcuI CTGAAG 2 cut(s) 886, 1703
AcyI GRCGYC 1 cut(s) 18
AdeI CACNNNGTG 1 cut(s) 2016
AfaI GTAC 4 cut(s) 548, 959, 1589, 1947
AfiI CCNNNNNNNGG 7 cut(s) 37, 68, 326, 1638, 1659, 1875, 2128
AhlI ACTAGT 1 cut(s) 973
AjnI CCWGG 5 cut(s) 36, 255, 770, 966, 1611
AloI GAACNNNNNNTCC 2 cut(s) 853, 885
Alw21I GWGCWC 3 cut(s) 543, 1241, 1305
Alw26I GTCTC 2 cut(s) 722, 1988
AlwI GGATC 6 cut(s) 237, 267, 958, 971, 1707, 1926
AlwNI CAGNNNCTG 2 cut(s) 704, 1023
AoxI GGCC 3 cut(s) 744, 1841, 2193
ApeKI GCWGC 9 cut(s) 12, 86, 116, 279, 1155, 1427, 1646, 1859, 1911
ApoI RAATTY 6 cut(s) 782, 941, 1183, 1594, 1775, 2142
Asp700I GAANNNNTTC 1 cut(s) 1184
AspS9I GGNCC 2 cut(s) 1842, 2193
AsuHPI GGTGA 5 cut(s) 134, 806, 1475, 1601, 2129
AsuII TTCGAA 3 cut(s) 754, 1779, 1835
BaeGI GKGCMC 1 cut(s) 55
BamHI GGATCC 1 cut(s) 963
BanI GGYRCC 1 cut(s) 1976
BanII GRGCYC 3 cut(s) 1241, 1489, 1584
BbsI GAAGAC 1 cut(s) 2190
Bbv12I GWGCWC 3 cut(s) 543, 1241, 1305
BbvI GCAGC 8 cut(s) 98, 103, 291, 1142, 1439, 1658, 1846, 1923
BccI CCATC 4 cut(s) 17, 640, 876, 1454
BciT130I CCWGG 5 cut(s) 38, 257, 772, 968, 1613
BclI TGATCA 2 cut(s) 1333, 1377
BcoDI GTCTC 2 cut(s) 722, 1988
BcuI ACTAGT 1 cut(s) 973
BfmI CTRYAG 2 cut(s) 117, 1024
BfuAI ACCTGC 1 cut(s) 156
BglII AGATCT 2 cut(s) 1143, 1624
BlpI GCTNAGC 1 cut(s) 275
BmcAI AGTACT 2 cut(s) 959, 1947
Bme1390I CCNGG 5 cut(s) 38, 257, 772, 968, 1613
BmgT120I GGNCC 2 cut(s) 1842, 2193
BmiI GGNNCC 7 cut(s) 29, 158, 965, 1343, 1978, 2133, 2230
BmrFI CCNGG 5 cut(s) 38, 257, 772, 968, 1613
BmrI ACTGGG 1 cut(s) 661
BmsI GCATC 7 cut(s) 98, 417, 756, 884, 1279, 1282, 1315
BmuI ACTGGG 1 cut(s) 661
BpiI GAAGAC 1 cut(s) 2190
BplI GAGNNNNNCTC 2 cut(s) 1659, 1691
BpmI CTGGAG 2 cut(s) 726, 855
Bpu10I CCTNAGC 1 cut(s) 2258
Bpu1102I GCTNAGC 1 cut(s) 275
Bpu14I TTCGAA 3 cut(s) 754, 1779, 1835
BpuEI CTTGAG 3 cut(s) 742, 1225, 1234
Bsa29I ATCGAT 1 cut(s) 2150
BsaBI GATNNNNATC 2 cut(s) 1677, 1698
BsaHI GRCGYC 1 cut(s) 18
BsaJI CCNNGG 8 cut(s) 37, 62, 93, 130, 325, 770, 967, 2189
BsaWI WCCGGW 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 853, 883
Bsc4I CCNNNNNNNGG 7 cut(s) 37, 68, 326, 1638, 1659, 1875, 2128
Bse1I ACTGG 6 cut(s) 427, 598, 667, 965, 1493, 1509
Bse8I GATNNNNATC 2 cut(s) 1677, 1698
BseBI CCWGG 5 cut(s) 38, 257, 772, 968, 1613
BseCI ATCGAT 1 cut(s) 2150
BseDI CCNNGG 8 cut(s) 37, 62, 93, 130, 325, 770, 967, 2189
BseGI GGATG 6 cut(s) 89, 126, 408, 648, 1294, 1699
BseJI GATNNNNATC 2 cut(s) 1677, 1698
BseLI CCNNNNNNNGG 7 cut(s) 37, 68, 326, 1638, 1659, 1875, 2128
BseMII CTCAG 3 cut(s) 289, 1746, 2249
BseNI ACTGG 6 cut(s) 427, 598, 667, 965, 1493, 1509
BseSI GKGCMC 1 cut(s) 55
BseXI GCAGC 8 cut(s) 98, 103, 291, 1142, 1439, 1658, 1846, 1923
BsgI GTGCAG 1 cut(s) 280
BshFI GGCC 3 cut(s) 746, 1843, 2195
BshNI GGYRCC 1 cut(s) 1976
BshVI ATCGAT 1 cut(s) 2150
BsiHKAI GWGCWC 3 cut(s) 543, 1241, 1305
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 2 cut(s) 978, 984
BslI CCNNNNNNNGG 7 cut(s) 37, 68, 326, 1638, 1659, 1875, 2128
BsmAI GTCTC 2 cut(s) 722, 1988
BsmFI GGGAC 2 cut(s) 978, 984
BsmI GAATGC 3 cut(s) 135, 1083, 2115
BsnI GGCC 3 cut(s) 746, 1843, 2195
Bsp119I TTCGAA 3 cut(s) 754, 1779, 1835
Bsp1286I GDGCHC 6 cut(s) 55, 543, 1241, 1305, 1489, 1584
Bsp1407I TGTACA 1 cut(s) 1587
Bsp1720I GCTNAGC 1 cut(s) 275
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 3 cut(s) 240, 253, 792
BspANI GGCC 3 cut(s) 746, 1843, 2195
BspCNI CTCAG 3 cut(s) 288, 1745, 2250
BspDI ATCGAT 1 cut(s) 2150
BspHI TCATGA 3 cut(s) 354, 1039, 1956
BspLI GGNNCC 7 cut(s) 29, 158, 965, 1343, 1978, 2133, 2230
BspMAI CTGCAG 2 cut(s) 121, 1028
BspMI ACCTGC 1 cut(s) 156
BspPI GGATC 6 cut(s) 237, 267, 958, 971, 1707, 1926
BspT104I TTCGAA 3 cut(s) 754, 1779, 1835
BspT107I GGYRCC 1 cut(s) 1976
BsrGI TGTACA 1 cut(s) 1587
BsrI ACTGG 6 cut(s) 427, 598, 667, 965, 1493, 1509
BssECI CCNNGG 8 cut(s) 37, 62, 93, 130, 325, 770, 967, 2189
BssNI GRCGYC 1 cut(s) 18
BssT1I CCWWGG 5 cut(s) 62, 93, 130, 325, 2189
Bst2UI CCWGG 5 cut(s) 38, 257, 772, 968, 1613
Bst4CI ACNGT 7 cut(s) 301, 514, 844, 992, 1201, 1713, 1954
BstACI GRCGYC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 1023
BstAUI TGTACA 1 cut(s) 1587
BstBI TTCGAA 3 cut(s) 754, 1779, 1835
BstC8I GCNNGC 4 cut(s) 267, 453, 1019, 2061
BstDEI CTNAG 6 cut(s) 275, 535, 1219, 1246, 1732, 2258
BstDSI CCRYGG 1 cut(s) 130
BstENI CCTNNNNNAGG 1 cut(s) 35
BstF5I GGATG 6 cut(s) 89, 126, 408, 648, 1294, 1699
BstMAI GTCTC 2 cut(s) 722, 1988
BstNI CCWGG 5 cut(s) 38, 257, 772, 968, 1613
BstNSI RCATGY 6 cut(s) 102, 455, 696, 1818, 2063, 2074
BstSCI CCNGG 5 cut(s) 36, 255, 770, 966, 1611
BstSFI CTRYAG 2 cut(s) 117, 1024
BstSLI GKGCMC 1 cut(s) 55
BstV1I GCAGC 8 cut(s) 98, 103, 291, 1142, 1439, 1658, 1846, 1923
BstV2I GAAGAC 1 cut(s) 2190
BstX2I RGATCY 5 cut(s) 229, 963, 1143, 1624, 1699
BstXI CCANNNNNNTGG 1 cut(s) 1482
BstYI RGATCY 5 cut(s) 229, 963, 1143, 1624, 1699
Bsu15I ATCGAT 1 cut(s) 2150
BsuRI GGCC 3 cut(s) 746, 1843, 2195
BsuTUI ATCGAT 1 cut(s) 2150
BtgI CCRYGG 1 cut(s) 130
BtgZI GCGATG 1 cut(s) 874
BtsCI GGATG 6 cut(s) 89, 126, 408, 648, 1294, 1699
BtsI GCAGTG 1 cut(s) 1021
BtsIMutI CAGTG 4 cut(s) 55, 231, 1021, 1197
BveI ACCTGC 1 cut(s) 156
Cac8I GCNNGC 4 cut(s) 267, 453, 1019, 2061
CaiI CAGNNNCTG 2 cut(s) 704, 1023
CciI TCATGA 3 cut(s) 354, 1039, 1956
Cfr13I GGNCC 2 cut(s) 1842, 2193
ClaI ATCGAT 1 cut(s) 2150
Csp6I GTAC 4 cut(s) 547, 958, 1588, 1946
CviQI GTAC 4 cut(s) 547, 958, 1588, 1946
DdeI CTNAG 6 cut(s) 275, 535, 1219, 1246, 1732, 2258
DraI TTTAAA 3 cut(s) 781, 946, 1417
DraIII CACNNNGTG 1 cut(s) 2016
Ecl136II GAGCTC 1 cut(s) 1239
Eco130I CCWWGG 5 cut(s) 62, 93, 130, 325, 2189
Eco24I GRGCYC 3 cut(s) 1241, 1489, 1584
Eco53kI GAGCTC 1 cut(s) 1239
Eco57I CTGAAG 2 cut(s) 886, 1703
EcoICRI GAGCTC 1 cut(s) 1239
EcoNI CCTNNNNNAGG 1 cut(s) 35
EcoRII CCWGG 5 cut(s) 36, 255, 770, 966, 1611
EcoT14I CCWWGG 5 cut(s) 62, 93, 130, 325, 2189
EcoT22I ATGCAT 2 cut(s) 1294, 1816
EcoT38I GRGCYC 3 cut(s) 1241, 1489, 1584
ErhI CCWWGG 5 cut(s) 62, 93, 130, 325, 2189
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FaqI GGGAC 2 cut(s) 978, 984
FbaI TGATCA 2 cut(s) 1333, 1377
FblI GTMKAC 2 cut(s) 815, 1708
FokI GGATG 6 cut(s) 76, 113, 395, 655, 1301, 1706
FriOI GRGCYC 3 cut(s) 1241, 1489, 1584
GsuI CTGGAG 2 cut(s) 726, 855
HaeIII GGCC 3 cut(s) 746, 1843, 2195
HapII CCGG 1 cut(s) 145
Hin1I GRCGYC 1 cut(s) 18
HincII GTYRAC 1 cut(s) 816
HindII GTYRAC 1 cut(s) 816
HindIII AAGCTT 1 cut(s) 1243
HinfI GANTC 6 cut(s) 733, 797, 1008, 1223, 1668, 1784
HpaII CCGG 1 cut(s) 145
HphI GGTGA 5 cut(s) 134, 806, 1475, 1601, 2129
Hpy166II GTNNAC 4 cut(s) 816, 1573, 1709, 2068
Hpy8I GTNNAC 4 cut(s) 816, 1573, 1709, 2068
Hpy99I CGWCG 2 cut(s) 20, 23
HpyAV CCTTC 9 cut(s) 330, 439, 1274, 1347, 1571, 1636, 1842, 2206, 2211
HpyCH4III ACNGT 7 cut(s) 301, 514, 844, 992, 1201, 1713, 1954
HpyCH4IV ACGT 1 cut(s) 18
HpyF3I CTNAG 6 cut(s) 275, 535, 1219, 1246, 1732, 2258
HpySE526I ACGT 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 18
Ksp22I TGATCA 2 cut(s) 1333, 1377
LmnI GCTCC 5 cut(s) 329, 448, 707, 874, 2228
Lsp1109I GCAGC 8 cut(s) 98, 103, 291, 1142, 1439, 1658, 1846, 1923
LweI GCATC 7 cut(s) 98, 417, 756, 884, 1279, 1282, 1315
MaeII ACGT 1 cut(s) 18
MfeI CAATTG 2 cut(s) 864, 1318
MflI RGATCY 5 cut(s) 229, 963, 1143, 1624, 1699
MhlI GDGCHC 6 cut(s) 55, 543, 1241, 1305, 1489, 1584
MlyI GAGTC 3 cut(s) 806, 1232, 1677
MmeI TCCRAC 2 cut(s) 1230, 1368
Mph1103I ATGCAT 2 cut(s) 1294, 1816
MroXI GAANNNNTTC 1 cut(s) 1184
MseI TTAA 7 cut(s) 509, 780, 945, 998, 1004, 1416, 1559
MslI CAYNNNNRTG 4 cut(s) 242, 302, 456, 880
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 5 cut(s) 38, 257, 772, 968, 1613
MunI CAATTG 2 cut(s) 864, 1318
Mva1269I GAATGC 3 cut(s) 135, 1083, 2115
MvaI CCWGG 5 cut(s) 38, 257, 772, 968, 1613
NcoI CCATGG 1 cut(s) 130
NlaIV GGNNCC 7 cut(s) 29, 158, 965, 1343, 1978, 2133, 2230
NmuCI GTSAC 3 cut(s) 140, 1713, 2169
NsiI ATGCAT 2 cut(s) 1294, 1816
NspI RCATGY 6 cut(s) 102, 455, 696, 1818, 2063, 2074
NspV TTCGAA 3 cut(s) 754, 1779, 1835
PaeI GCATGC 2 cut(s) 455, 2063
PagI TCATGA 3 cut(s) 354, 1039, 1956
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PctI GAATGC 3 cut(s) 135, 1083, 2115
PdmI GAANNNNTTC 1 cut(s) 1184
PfeI GAWTC 3 cut(s) 733, 1008, 1784
PleI GAGTC 3 cut(s) 805, 1231, 1676
PpsI GAGTC 3 cut(s) 805, 1231, 1676
PsiI TTATAA 1 cut(s) 2006
Psp124BI GAGCTC 1 cut(s) 1241
Psp6I CCWGG 5 cut(s) 36, 255, 770, 966, 1611
PspGI CCWGG 5 cut(s) 36, 255, 770, 966, 1611
PspN4I GGNNCC 7 cut(s) 29, 158, 965, 1343, 1978, 2133, 2230
PspPI GGNCC 2 cut(s) 1842, 2193
PstI CTGCAG 2 cut(s) 121, 1028
PstNI CAGNNNCTG 2 cut(s) 704, 1023
PsuI RGATCY 5 cut(s) 229, 963, 1143, 1624, 1699
RsaI GTAC 4 cut(s) 548, 959, 1589, 1947
RsaNI GTAC 4 cut(s) 547, 958, 1588, 1946
RseI CAYNNNNRTG 4 cut(s) 242, 302, 456, 880
SacI GAGCTC 1 cut(s) 1241
SalI GTCGAC 1 cut(s) 814
SaqAI TTAA 7 cut(s) 509, 780, 945, 998, 1004, 1416, 1559
Sau96I GGNCC 2 cut(s) 1842, 2193
ScaI AGTACT 2 cut(s) 959, 1947
SchI GAGTC 3 cut(s) 806, 1232, 1677
ScrFI CCNGG 5 cut(s) 38, 257, 772, 968, 1613
SduI GDGCHC 6 cut(s) 55, 543, 1241, 1305, 1489, 1584
SfaNI GCATC 7 cut(s) 98, 417, 756, 884, 1279, 1282, 1315
SfcI CTRYAG 2 cut(s) 117, 1024
SfuI TTCGAA 3 cut(s) 754, 1779, 1835
SmiI ATTTAAAT 1 cut(s) 781
SmiMI CAYNNNNRTG 4 cut(s) 242, 302, 456, 880
SmlI CTYRAG 3 cut(s) 721, 1213, 1240
SmoI CTYRAG 3 cut(s) 721, 1213, 1240
SpeI ACTAGT 1 cut(s) 973
SphI GCATGC 2 cut(s) 455, 2063
SsiI CCGC 3 cut(s) 240, 253, 792
SspI AATATT 3 cut(s) 378, 638, 2101
SstI GAGCTC 1 cut(s) 1241
StyD4I CCNGG 5 cut(s) 36, 255, 770, 966, 1611
StyI CCWWGG 5 cut(s) 62, 93, 130, 325, 2189
SwaI ATTTAAAT 1 cut(s) 781
TaaI ACNGT 7 cut(s) 301, 514, 844, 992, 1201, 1713, 1954
TaiI ACGT 1 cut(s) 21
TaqII GACCGA 1 cut(s) 274
TatI WGTACW 4 cut(s) 546, 957, 1587, 1945
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 3 cut(s) 733, 1008, 1784
Tru1I TTAA 7 cut(s) 509, 780, 945, 998, 1004, 1416, 1559
Tru9I TTAA 7 cut(s) 509, 780, 945, 998, 1004, 1416, 1559
TscAI CASTG 4 cut(s) 55, 231, 1028, 1204
TseFI GTSAC 3 cut(s) 140, 1713, 2169
TseI GCWGC 9 cut(s) 12, 86, 116, 279, 1155, 1427, 1646, 1859, 1911
Tsp45I GTSAC 3 cut(s) 140, 1713, 2169
TspGWI ACGGA 2 cut(s) 1694, 2241
TspRI CASTG 4 cut(s) 55, 231, 1028, 1204
XagI CCTNNNNNAGG 1 cut(s) 35
XapI RAATTY 6 cut(s) 782, 941, 1183, 1594, 1775, 2142
XbaI TCTAGA 3 cut(s) 878, 1456, 2104
XceI RCATGY 6 cut(s) 102, 455, 696, 1818, 2063, 2074
XcmI CCANNNNNNNNNTGG 2 cut(s) 419, 879
XmiI GTMKAC 2 cut(s) 815, 1708
XmnI GAANNNNTTC 1 cut(s) 1184
ZraI GACGTC 1 cut(s) 19
ZrmI AGTACT 2 cut(s) 959, 1947
Zsp2I ATGCAT 2 cut(s) 1294, 1816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.