Rmu_sc0007263.1_g000002

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007263.1
Physical Location & Seq
Reverse (-)
5091 .. 7343
2253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007263.1_g000002.1.cds

Sequence Viewer

Length: 2253 bp
atgaaaatcggctgcgacgtcgatgggaacctcaaccagggaaagttcagtgcccctatgccttggattgggatttatgtaactgcagcatccttggcatgtctagttacaatggctgcagatgtcatccatggcattcgtcaccggaaactctggttcccttgcaggtatttctcaatcaatgcaacttctctgaccctgatagctgtggcaatcaaattgtcagtggatctaaacaccgctatgcctagccgccaggatcagctcgcaaagctcagcagctcggtcttggtctgcacagtaatgggtaactctatgccttcccttggagctatggaaaatgaagaactattcatgaatgttatggcttttggaatattggtagttacccttattgtgaatatctgcatccaattagctactggtgcaatctttgttttctggaaggagcatgcttgtgttatgttcatcatgcttgttttgcttatcatgctgtgtttctctgctttaactgttccgatttgtaagcgttacttagagcacaagtacaacaagaggtatcaattagctctgaaagagagttcaaatgaaactggtaaaagacttgtttgcaaaattagagaggatttgatgaaatattggatgatggctcatacctctagcccccagtttgtaatggggcggtcagcaacatgcacagcttctggagcaatctgtctcttgagttccctgattctagcagaggccatacttcgaacttacttgatgccctggtcatttaaattttgtagcggtgagtctgactacaagtggtcgaccactttagttcttgttacacagacagtagcagtagcagtaggaacaattgctccagcatctagatggttcatcgccataaacttcaggtgtgcaaaaagaggaaatgtaacctacaaaggagaatttaaagtagaaaagtactggatccagggactagtggagttgaaagactgtcccttaactttaagaatcagaagcaggcactgcaggaaacttgctcatgacacaaaaaataaacttttggacttgtgtattggaatgcagaaaggaaatgtcataatgagcaaagcaattcggcttatttccattttctttgtaagcaagatcttgatatgctgcgacttctgcaaggagtggaagaagaatttcaaatgcaacactgttttcaacgactctagcctagagtcatcacaatcgagctcaagcttagaacatcttacctgttatgttttgcatcttgaaggggaggatgcattagttgagcacatgacgaaaagcaattgtgatgctactgatcattggttccaaaggggaaggaggagtgagcctaaacatctgatcaaattgttggagaaatcaacattttcacaaggatttaaaggagtagcagctttcgacaacgacaaagttccctctctagatggtgaagaacctccaaattgttgggctctaccagttgcaacactagccggtattgctcttgcacttccaaacagcagcagttcttcaataaaagggttaatgcgtagtgtacacgaagggctcatgtacataaatttcattgaaaatcaccttgaaagtaaagatcttaccaacattaggaaggcagcaacccatgtctggctaggagtcgatctctatcacacatggctggatgtggatctccataaactgtcacttcaggggaaaagctcaaaggaaatacttgaagaactttctgaaactgcaaaagtcaaatacgaagactctaagaagagccaaacagctataaatgcatgtatcagagagactccttcaaaatggcctgtaaaggaattagctgctaattccatgtataggatatgtcaaaccattctgctaaaccatagaggcagcatcaatcaaacagatgaaagactacttgaagtactgacagtcatgatcgctgacattcttggtgcctgtctcactaacttgcagcaagttataagcaccaagtgtttgaacagcaccattgaagatagggaggaaagtgtgaggcatgcagttcacattctagggaaaactgaaaagattctgaatattctagaccagagcattccccgaagtttggaacctcaccaaatttcatcgattgatgagtggcgtttgtcactcagattcccttcttcatctccatcagagagtgacagagcctctcctgtttcaaatgacttctacctgagaattgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

750

Amino Acids

84.26

Weight (kDa)

8.64

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2006
AatII GACGTC 1 cut(s) 21
Acc36I ACCTGC 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 1976
AccI GTMKAC 1 cut(s) 815
AciI CCGC 4 cut(s) 240, 253, 682, 792
AclWI GGATC 5 cut(s) 237, 267, 958, 971, 1707
AcsI RAATTY 5 cut(s) 782, 941, 1183, 1594, 2142
AcuI CTGAAG 2 cut(s) 886, 1703
AcyI GRCGYC 1 cut(s) 18
AdeI CACNNNGTG 1 cut(s) 2016
AfaI GTAC 5 cut(s) 548, 959, 1572, 1589, 1947
AfiI CCNNNNNNNGG 7 cut(s) 37, 68, 326, 1638, 1659, 1875, 2128
AhlI ACTAGT 1 cut(s) 973
AjnI CCWGG 4 cut(s) 36, 255, 770, 966
AloI GAACNNNNNNTCC 2 cut(s) 853, 885
Alw21I GWGCWC 3 cut(s) 543, 1241, 1305
Alw26I GTCTC 3 cut(s) 722, 1820, 1988
AlwI GGATC 5 cut(s) 237, 267, 958, 971, 1707
AlwNI CAGNNNCTG 2 cut(s) 704, 1023
AoxI GGCC 2 cut(s) 744, 1841
ApoI RAATTY 5 cut(s) 782, 941, 1183, 1594, 2142
Asp700I GAANNNNTTC 2 cut(s) 1184, 2091
AsuHPI GGTGA 5 cut(s) 134, 806, 1475, 1601, 2129
AsuII TTCGAA 1 cut(s) 754
BaeGI GKGCMC 1 cut(s) 55
BamHI GGATCC 1 cut(s) 963
BanI GGYRCC 1 cut(s) 1976
BanII GRGCYC 3 cut(s) 1241, 1489, 1584
BbsI GAAGAC 1 cut(s) 1788
Bbv12I GWGCWC 3 cut(s) 543, 1241, 1305
BccI CCATC 5 cut(s) 17, 640, 876, 1454, 2203
BciT130I CCWGG 4 cut(s) 38, 257, 772, 968
BclI TGATCA 2 cut(s) 1333, 1377
BcoDI GTCTC 3 cut(s) 722, 1820, 1988
BcuI ACTAGT 1 cut(s) 973
BfmI CTRYAG 3 cut(s) 84, 117, 1024
BfuAI ACCTGC 1 cut(s) 156
BglII AGATCT 2 cut(s) 1143, 1624
BlpI GCTNAGC 1 cut(s) 275
BmcAI AGTACT 2 cut(s) 959, 1947
Bme1390I CCNGG 4 cut(s) 38, 257, 772, 968
BmiI GGNNCC 6 cut(s) 29, 158, 965, 1343, 1978, 2133
BmrFI CCNGG 4 cut(s) 38, 257, 772, 968
BmrI ACTGGG 1 cut(s) 661
BmsI GCATC 8 cut(s) 98, 417, 756, 884, 1279, 1282, 1315, 1923
BmuI ACTGGG 1 cut(s) 661
BpiI GAAGAC 1 cut(s) 1788
BplI GAGNNNNNCTC 2 cut(s) 1659, 1691
BpmI CTGGAG 2 cut(s) 726, 855
Bpu1102I GCTNAGC 1 cut(s) 275
Bpu14I TTCGAA 1 cut(s) 754
BpuEI CTTGAG 2 cut(s) 742, 1225
Bsa29I ATCGAT 1 cut(s) 2150
BsaBI GATNNNNATC 2 cut(s) 1677, 1698
BsaHI GRCGYC 1 cut(s) 18
BsaJI CCNNGG 7 cut(s) 37, 62, 93, 130, 325, 770, 967
BsaWI WCCGGW 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 853, 883
Bsc4I CCNNNNNNNGG 7 cut(s) 37, 68, 326, 1638, 1659, 1875, 2128
Bse118I RCCGGY 1 cut(s) 1508
Bse1I ACTGG 5 cut(s) 427, 598, 667, 965, 1493
Bse8I GATNNNNATC 2 cut(s) 1677, 1698
BseBI CCWGG 4 cut(s) 38, 257, 772, 968
BseCI ATCGAT 1 cut(s) 2150
BseDI CCNNGG 7 cut(s) 37, 62, 93, 130, 325, 770, 967
BseGI GGATG 6 cut(s) 89, 126, 408, 648, 1294, 1699
BseJI GATNNNNATC 2 cut(s) 1677, 1698
BseLI CCNNNNNNNGG 7 cut(s) 37, 68, 326, 1638, 1659, 1875, 2128
BseMII CTCAG 3 cut(s) 289, 2188, 2231
BseNI ACTGG 5 cut(s) 427, 598, 667, 965, 1493
BseRI GAGGAG 1 cut(s) 1372
BseSI GKGCMC 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 280
BshFI GGCC 2 cut(s) 746, 1843
BshNI GGYRCC 1 cut(s) 1976
BshVI ATCGAT 1 cut(s) 2150
BsiHKAI GWGCWC 3 cut(s) 543, 1241, 1305
BsiSI CCGG 2 cut(s) 145, 1509
BslFI GGGAC 2 cut(s) 978, 984
BslI CCNNNNNNNGG 7 cut(s) 37, 68, 326, 1638, 1659, 1875, 2128
BsmAI GTCTC 3 cut(s) 722, 1820, 1988
BsmFI GGGAC 2 cut(s) 978, 984
BsmI GAATGC 3 cut(s) 135, 1083, 2115
BsnI GGCC 2 cut(s) 746, 1843
Bsp119I TTCGAA 1 cut(s) 754
Bsp1286I GDGCHC 6 cut(s) 55, 543, 1241, 1305, 1489, 1584
Bsp1407I TGTACA 2 cut(s) 1570, 1587
Bsp1720I GCTNAGC 1 cut(s) 275
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 4 cut(s) 240, 253, 682, 792
BspANI GGCC 2 cut(s) 746, 1843
BspCNI CTCAG 3 cut(s) 288, 2187, 2232
BspDI ATCGAT 1 cut(s) 2150
BspHI TCATGA 3 cut(s) 354, 1039, 1956
BspLI GGNNCC 6 cut(s) 29, 158, 965, 1343, 1978, 2133
BspMAI CTGCAG 3 cut(s) 88, 121, 1028
BspMI ACCTGC 1 cut(s) 156
BspPI GGATC 5 cut(s) 237, 267, 958, 971, 1707
BspQI GCTCTTC 1 cut(s) 1787
BspT104I TTCGAA 1 cut(s) 754
BspT107I GGYRCC 1 cut(s) 1976
BsrFI RCCGGY 1 cut(s) 1508
BsrGI TGTACA 2 cut(s) 1570, 1587
BsrI ACTGG 5 cut(s) 427, 598, 667, 965, 1493
BssAI RCCGGY 1 cut(s) 1508
BssECI CCNNGG 7 cut(s) 37, 62, 93, 130, 325, 770, 967
BssNI GRCGYC 1 cut(s) 18
BssT1I CCWWGG 4 cut(s) 62, 93, 130, 325
Bst2UI CCWGG 4 cut(s) 38, 257, 772, 968
Bst4CI ACNGT 7 cut(s) 301, 514, 844, 992, 1201, 1713, 1954
Bst6I CTCTTC 1 cut(s) 1787
BstACI GRCGYC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 1023
BstAUI TGTACA 2 cut(s) 1570, 1587
BstBI TTCGAA 1 cut(s) 754
BstC8I GCNNGC 4 cut(s) 267, 453, 1019, 2061
BstDEI CTNAG 6 cut(s) 275, 535, 1246, 1788, 2174, 2240
BstDSI CCRYGG 1 cut(s) 130
BstENI CCTNNNNNAGG 1 cut(s) 35
BstF5I GGATG 6 cut(s) 89, 126, 408, 648, 1294, 1699
BstMAI GTCTC 3 cut(s) 722, 1820, 1988
BstNI CCWGG 4 cut(s) 38, 257, 772, 968
BstNSI RCATGY 5 cut(s) 102, 455, 696, 1818, 2063
BstSCI CCNGG 4 cut(s) 36, 255, 770, 966
BstSFI CTRYAG 3 cut(s) 84, 117, 1024
BstSLI GKGCMC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 1788
BstX2I RGATCY 5 cut(s) 229, 963, 1143, 1624, 1699
BstXI CCANNNNNNTGG 1 cut(s) 1482
BstYI RGATCY 5 cut(s) 229, 963, 1143, 1624, 1699
Bsu15I ATCGAT 1 cut(s) 2150
BsuRI GGCC 2 cut(s) 746, 1843
BsuTUI ATCGAT 1 cut(s) 2150
BtgI CCRYGG 1 cut(s) 130
BtgZI GCGATG 1 cut(s) 874
BtsCI GGATG 6 cut(s) 89, 126, 408, 648, 1294, 1699
BtsI GCAGTG 1 cut(s) 1021
BtsIMutI CAGTG 4 cut(s) 55, 231, 1021, 1197
BveI ACCTGC 1 cut(s) 156
Cac8I GCNNGC 4 cut(s) 267, 453, 1019, 2061
CaiI CAGNNNCTG 2 cut(s) 704, 1023
CciI TCATGA 3 cut(s) 354, 1039, 1956
Cfr10I RCCGGY 1 cut(s) 1508
ClaI ATCGAT 1 cut(s) 2150
Csp6I GTAC 5 cut(s) 547, 958, 1571, 1588, 1946
CviQI GTAC 5 cut(s) 547, 958, 1571, 1588, 1946
DdeI CTNAG 6 cut(s) 275, 535, 1246, 1788, 2174, 2240
DraI TTTAAA 3 cut(s) 781, 946, 1417
DraIII CACNNNGTG 1 cut(s) 2016
Eam1104I CTCTTC 1 cut(s) 1787
EarI CTCTTC 1 cut(s) 1787
Ecl136II GAGCTC 1 cut(s) 1239
Eco130I CCWWGG 4 cut(s) 62, 93, 130, 325
Eco24I GRGCYC 3 cut(s) 1241, 1489, 1584
Eco53kI GAGCTC 1 cut(s) 1239
Eco57I CTGAAG 2 cut(s) 886, 1703
EcoICRI GAGCTC 1 cut(s) 1239
EcoNI CCTNNNNNAGG 1 cut(s) 35
EcoRII CCWGG 4 cut(s) 36, 255, 770, 966
EcoT14I CCWWGG 4 cut(s) 62, 93, 130, 325
EcoT22I ATGCAT 2 cut(s) 1294, 1816
EcoT38I GRGCYC 3 cut(s) 1241, 1489, 1584
ErhI CCWWGG 4 cut(s) 62, 93, 130, 325
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FaqI GGGAC 2 cut(s) 978, 984
FbaI TGATCA 2 cut(s) 1333, 1377
FblI GTMKAC 1 cut(s) 815
FokI GGATG 6 cut(s) 76, 113, 395, 655, 1301, 1706
FriOI GRGCYC 3 cut(s) 1241, 1489, 1584
GsuI CTGGAG 2 cut(s) 726, 855
HaeIII GGCC 2 cut(s) 746, 1843
HapII CCGG 2 cut(s) 145, 1509
Hin1I GRCGYC 1 cut(s) 18
HincII GTYRAC 1 cut(s) 816
HindII GTYRAC 1 cut(s) 816
HindIII AAGCTT 1 cut(s) 1243
HpaII CCGG 2 cut(s) 145, 1509
HphI GGTGA 5 cut(s) 134, 806, 1475, 1601, 2129
Hpy166II GTNNAC 4 cut(s) 816, 1571, 1573, 2068
Hpy8I GTNNAC 4 cut(s) 816, 1571, 1573, 2068
Hpy99I CGWCG 2 cut(s) 20, 23
HpyAV CCTTC 8 cut(s) 330, 439, 1274, 1347, 1571, 1636, 1842, 2193
HpyCH4III ACNGT 7 cut(s) 301, 514, 844, 992, 1201, 1713, 1954
HpyCH4IV ACGT 1 cut(s) 18
HpyF3I CTNAG 6 cut(s) 275, 535, 1246, 1788, 2174, 2240
HpySE526I ACGT 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 18
Ksp22I TGATCA 2 cut(s) 1333, 1377
LguI GCTCTTC 1 cut(s) 1787
LmnI GCTCC 4 cut(s) 329, 448, 707, 874
LweI GCATC 8 cut(s) 98, 417, 756, 884, 1279, 1282, 1315, 1923
MaeII ACGT 1 cut(s) 18
MfeI CAATTG 2 cut(s) 864, 1318
MflI RGATCY 5 cut(s) 229, 963, 1143, 1624, 1699
MhlI GDGCHC 6 cut(s) 55, 543, 1241, 1305, 1489, 1584
MlyI GAGTC 6 cut(s) 806, 1205, 1232, 1677, 1778, 1822
MmeI TCCRAC 1 cut(s) 1368
Mph1103I ATGCAT 2 cut(s) 1294, 1816
MroXI GAANNNNTTC 2 cut(s) 1184, 2091
MseI TTAA 7 cut(s) 509, 780, 945, 998, 1004, 1416, 1559
MslI CAYNNNNRTG 4 cut(s) 242, 302, 456, 880
MspI CCGG 2 cut(s) 145, 1509
MspR9I CCNGG 4 cut(s) 38, 257, 772, 968
MunI CAATTG 2 cut(s) 864, 1318
Mva1269I GAATGC 3 cut(s) 135, 1083, 2115
MvaI CCWGG 4 cut(s) 38, 257, 772, 968
NcoI CCATGG 1 cut(s) 130
NlaIV GGNNCC 6 cut(s) 29, 158, 965, 1343, 1978, 2133
NmuCI GTSAC 4 cut(s) 140, 1713, 2169, 2204
NsiI ATGCAT 2 cut(s) 1294, 1816
NspI RCATGY 5 cut(s) 102, 455, 696, 1818, 2063
NspV TTCGAA 1 cut(s) 754
PaeI GCATGC 2 cut(s) 455, 2063
PagI TCATGA 3 cut(s) 354, 1039, 1956
PciSI GCTCTTC 1 cut(s) 1787
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PctI GAATGC 3 cut(s) 135, 1083, 2115
PdmI GAANNNNTTC 2 cut(s) 1184, 2091
PfeI GAWTC 4 cut(s) 733, 1008, 2092, 2178
PleI GAGTC 6 cut(s) 805, 1205, 1231, 1676, 1778, 1822
PpsI GAGTC 6 cut(s) 805, 1205, 1231, 1676, 1778, 1822
PsiI TTATAA 1 cut(s) 2006
Psp124BI GAGCTC 1 cut(s) 1241
Psp6I CCWGG 4 cut(s) 36, 255, 770, 966
PspGI CCWGG 4 cut(s) 36, 255, 770, 966
PspN4I GGNNCC 6 cut(s) 29, 158, 965, 1343, 1978, 2133
PstI CTGCAG 3 cut(s) 88, 121, 1028
PstNI CAGNNNCTG 2 cut(s) 704, 1023
PsuI RGATCY 5 cut(s) 229, 963, 1143, 1624, 1699
RsaI GTAC 5 cut(s) 548, 959, 1572, 1589, 1947
RsaNI GTAC 5 cut(s) 547, 958, 1571, 1588, 1946
RseI CAYNNNNRTG 4 cut(s) 242, 302, 456, 880
SacI GAGCTC 1 cut(s) 1241
SalI GTCGAC 1 cut(s) 814
SapI GCTCTTC 1 cut(s) 1787
SaqAI TTAA 7 cut(s) 509, 780, 945, 998, 1004, 1416, 1559
ScaI AGTACT 2 cut(s) 959, 1947
SchI GAGTC 6 cut(s) 806, 1205, 1232, 1677, 1778, 1822
ScrFI CCNGG 4 cut(s) 38, 257, 772, 968
SduI GDGCHC 6 cut(s) 55, 543, 1241, 1305, 1489, 1584
SfaNI GCATC 8 cut(s) 98, 417, 756, 884, 1279, 1282, 1315, 1923
SfcI CTRYAG 3 cut(s) 84, 117, 1024
SfuI TTCGAA 1 cut(s) 754
SmiI ATTTAAAT 1 cut(s) 781
SmiMI CAYNNNNRTG 4 cut(s) 242, 302, 456, 880
SmlI CTYRAG 2 cut(s) 721, 1240
SmoI CTYRAG 2 cut(s) 721, 1240
SpeI ACTAGT 1 cut(s) 973
SphI GCATGC 2 cut(s) 455, 2063
SsiI CCGC 4 cut(s) 240, 253, 682, 792
SspI AATATT 3 cut(s) 378, 638, 2101
SstI GAGCTC 1 cut(s) 1241
StyD4I CCNGG 4 cut(s) 36, 255, 770, 966
StyI CCWWGG 4 cut(s) 62, 93, 130, 325
SwaI ATTTAAAT 1 cut(s) 781
TaaI ACNGT 7 cut(s) 301, 514, 844, 992, 1201, 1713, 1954
TaiI ACGT 1 cut(s) 21
TaqI TCGA 7 cut(s) 21, 754, 815, 1235, 1434, 1671, 2150
TaqII GACCGA 1 cut(s) 274
TatI WGTACW 5 cut(s) 546, 957, 1570, 1587, 1945
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 4 cut(s) 733, 1008, 2092, 2178
Tru1I TTAA 7 cut(s) 509, 780, 945, 998, 1004, 1416, 1559
Tru9I TTAA 7 cut(s) 509, 780, 945, 998, 1004, 1416, 1559
TscAI CASTG 4 cut(s) 55, 231, 1028, 1204
TseFI GTSAC 4 cut(s) 140, 1713, 2169, 2204
Tsp45I GTSAC 4 cut(s) 140, 1713, 2169, 2204
TspRI CASTG 4 cut(s) 55, 231, 1028, 1204
XagI CCTNNNNNAGG 1 cut(s) 35
XapI RAATTY 5 cut(s) 782, 941, 1183, 1594, 2142
XbaI TCTAGA 3 cut(s) 878, 1456, 2104
XceI RCATGY 5 cut(s) 102, 455, 696, 1818, 2063
XcmI CCANNNNNNNNNTGG 2 cut(s) 419, 879
XmiI GTMKAC 1 cut(s) 815
XmnI GAANNNNTTC 2 cut(s) 1184, 2091
ZraI GACGTC 1 cut(s) 19
ZrmI AGTACT 2 cut(s) 959, 1947
Zsp2I ATGCAT 2 cut(s) 1294, 1816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.