Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005606

Physical Location & Seq

Genomic Coordinates Forward (+)

6818093 .. 6818986

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g05070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAAACTGTTAAAGAAATCAACACTTTCACAAGGATTCAAGGGAATTGCCAATTTTGACAGTGAACAAGTTCCCTCTCTAGACATGGAAGAACCACCAAATTGTTGGGCACTACCTGTCGTGACACTTACAAGTATTGCTTTTGCACTTTCAAACATCAGCAGTAGTTCAATTGAAGAGCTGACAAGTGGTGTTCACGAAGGGCTCATGTACATAAATTTTATTGAAAATTACCTGGATGGTAAAGAAGATGTCACCAATGTCAGAAAGGCAGCAATTACAGTGTGGCAAGGAGTTGATCTCTATCACAAATGGCTAGATGTGGATCTCCGCAAAATGTCACCTGAGGGGAAGAGCTCAAAGGAAATACTTGAAGGACTTGCTGAGACTGCAAAGTTTATATTTGAAGAGTCTAGAAAGAAGCATATGACTACGAATGCATGTTTAAGAGATAACCCTTCAAAATGGCCTGTTAGAGAACTGGCTGCTAATTCCATGTATAGGATAAGTCAAACTATTCTGATGAATTATGAAGGCAGCATCAACCAGACAGGTGAGAGATTATTCGAAGAGCTGAATGTCATGATTTCGGACATAATGGCTGCTTGTCTCACTAATTTACGTCTAGTTATAAAGAGGAAGTGTCTGAGCATCGGCATTGAAGAGAGGGAGGAGGGTGTGCGGCATGCAGTTTACATTCTTGGCAAAACTGAAAACATTTTGAATATTCTAGACCATAGAATTCCCCCAAGTATGGACCTGCACCAAATTTCATGCATTGATGAGTGGCGTTCGTTGCACAAGGACAGTCCCTTGTACTTCCCTTCTCCATCTCCATCAGAGGGTGACGAAGCCTCTTCTCTTTCAAGTGACTTCTACCTGGTGATTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

298

Amino Acids

33.56

Weight (kDa)

5.15

Isoelectric Point (pI)

65.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17250 AT4G17250 AT4G17250 AT5G47580
fragaria_vesca	FvH4_3g26880
malus_domestica	MD06G1060700.v1.1
prunus_persica	Prupe.5G071700_v2.0.a1 Prupe.5G071900_v2.0.a1
pyrus_communis	pycom06g05020 pycom06g05070
rosa_chinensis	RchiOBHm_Chr7g0202951 RchiOBHm_Chr7g0202961
rosa_laevigata	RLG00000003561 RLG00000003563
rosa_multiflora	Rmu_sc0007263.1_g000002 Rmu_sc0008159.1_g000003 Rmu_sc0008159.1_g000011 Rmu_sc0013377.1_g000004
rosa_roxburghii	Rroxscaffold_3G00254140 Rroxscaffold_3G00254160
rosa_rugosa	Rorug07G0074000
rosa_samantha	Rh7AG202100 Rh7BG202200 Rh7CG213200 Rh7DG209000 Rh7DG209200
rosa_wichuraiana	Rw7G017660 Rw7G017670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	632
Acc36I	ACCTGC	1 cut(s)	768
AciI	CCGC	2 cut(s)	331, 682
AclWI	GGATC	1 cut(s)	333
AcsI	RAATTY	3 cut(s)	217, 741, 768
AfaI	GTAC	2 cut(s)	212, 818
AfiI	CCNNNNNNNGG	3 cut(s)	501, 754, 842
AjnI	CCWGG	2 cut(s)	234, 879
AluBI	AGCT	3 cut(s)	181, 357, 574
AluI	AGCT	3 cut(s)	181, 357, 574
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	2 cut(s)	380, 614
AlwI	GGATC	1 cut(s)	333
AoxI	GGCC	1 cut(s)	467
ApeKI	GCWGC	4 cut(s)	272, 485, 537, 602
ApoI	RAATTY	3 cut(s)	217, 741, 768
Asp700I	GAANNNNTTC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	757
AsuHPI	GGTGA	4 cut(s)	247, 333, 566, 857
AsuII	TTCGAA	1 cut(s)	567
AvaII	GGWCC	1 cut(s)	757
AxyI	CCTNAGG	1 cut(s)	345
BaeGI	GKGCMC	1 cut(s)	112
BanII	GRGCYC	2 cut(s)	207, 359
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	4 cut(s)	284, 472, 549, 589
BccI	CCATC	3 cut(s)	233, 838, 844
BciT130I	CCWGG	2 cut(s)	236, 881
BcoDI	GTCTC	2 cut(s)	380, 614
BfaI	CTAG	6 cut(s)	80, 317, 414, 626, 731, 892
BfuAI	ACCTGC	1 cut(s)	768
BisI	GCNGC	5 cut(s)	273, 486, 538, 603, 683
BlsI	GCNGC	5 cut(s)	274, 487, 539, 604, 684
Bme1390I	CCNGG	2 cut(s)	236, 881
Bme18I	GGWCC	1 cut(s)	757
BmgT120I	GGNCC	1 cut(s)	757
BmrFI	CCNGG	2 cut(s)	236, 881
BmsI	GCATC	2 cut(s)	549, 660
BplI	GAGNNNNNCTC	2 cut(s)	285, 317
Bpu14I	TTCGAA	1 cut(s)	567
BsaBI	GATNNNNATC	2 cut(s)	303, 324
Bsc4I	CCNNNNNNNGG	3 cut(s)	501, 754, 842
Bse1I	ACTGG	1 cut(s)	486
Bse21I	CCTNAGG	1 cut(s)	345
Bse8I	GATNNNNATC	2 cut(s)	303, 324
BseBI	CCWGG	2 cut(s)	236, 881
BseGI	GGATG	1 cut(s)	244
BseJI	GATNNNNATC	2 cut(s)	303, 324
BseLI	CCNNNNNNNGG	3 cut(s)	501, 754, 842
BseMII	CTCAG	3 cut(s)	336, 375, 638
BseNI	ACTGG	1 cut(s)	486
BseRI	GAGGAG	1 cut(s)	686
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	4 cut(s)	284, 472, 549, 589
BsgI	GTGCAG	1 cut(s)	746
BshFI	GGCC	1 cut(s)	469
BsiHKAI	GWGCWC	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	795
BslI	CCNNNNNNNGG	3 cut(s)	501, 754, 842
BsmAI	GTCTC	2 cut(s)	380, 614
BsmFI	GGGAC	1 cut(s)	795
BsmI	GAATGC	1 cut(s)	442
BsnI	GGCC	1 cut(s)	469
Bsp119I	TTCGAA	1 cut(s)	567
Bsp1286I	GDGCHC	3 cut(s)	112, 207, 359
Bsp1407I	TGTACA	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	298, 325
BspACI	CCGC	2 cut(s)	331, 682
BspANI	GGCC	1 cut(s)	469
BspCNI	CTCAG	3 cut(s)	337, 376, 639
BspHI	TCATGA	1 cut(s)	582
BspMI	ACCTGC	1 cut(s)	768
BspPI	GGATC	1 cut(s)	333
BspQI	GCTCTTC	3 cut(s)	171, 347, 564
BspT104I	TTCGAA	1 cut(s)	567
BsrGI	TGTACA	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	486
BssMI	GATC	2 cut(s)	298, 325
Bst2UI	CCWGG	2 cut(s)	236, 881
Bst4CI	ACNGT	4 cut(s)	9, 62, 283, 809
Bst6I	CTCTTC	6 cut(s)	171, 347, 402, 564, 657, 862
BstAUI	TGTACA	1 cut(s)	210
BstBI	TTCGAA	1 cut(s)	567
BstC8I	GCNNGC	1 cut(s)	687
BstDEI	CTNAG	3 cut(s)	345, 384, 647
BstF5I	GGATG	1 cut(s)	244
BstKTI	GATC	2 cut(s)	301, 328
BstMAI	GTCTC	2 cut(s)	380, 614
BstMBI	GATC	2 cut(s)	298, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 796
BstNI	CCWGG	2 cut(s)	236, 881
BstNSI	RCATGY	2 cut(s)	444, 689
BstSCI	CCNGG	2 cut(s)	234, 879
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	4 cut(s)	284, 472, 549, 589
BstX2I	RGATCY	1 cut(s)	325
BstXI	CCANNNNNNTGG	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	325
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	469
BtsCI	GGATG	1 cut(s)	244
BtsIMutI	CAGTG	2 cut(s)	67, 288
BveI	ACCTGC	1 cut(s)	768
Cac8I	GCNNGC	1 cut(s)	687
CciI	TCATGA	1 cut(s)	582
Cfr13I	GGNCC	1 cut(s)	757
CsiI	ACCWGGT	1 cut(s)	879
Csp6I	GTAC	2 cut(s)	211, 817
CviAII	CATG	7 cut(s)	85, 208, 441, 496, 583, 686, 774
CviJI	RGCY	9 cut(s)	181, 205, 316, 357, 469, 485, 574, 602, 854
CviKI_1	RGCY	9 cut(s)	181, 205, 316, 357, 469, 485, 574, 602, 854
CviQI	GTAC	2 cut(s)	211, 817
DdeI	CTNAG	3 cut(s)	345, 384, 647
DpnI	GATC	2 cut(s)	300, 327
DpnII	GATC	2 cut(s)	298, 325
Eam1104I	CTCTTC	6 cut(s)	171, 347, 402, 564, 657, 862
EarI	CTCTTC	6 cut(s)	171, 347, 402, 564, 657, 862
Ecl136II	GAGCTC	1 cut(s)	357
Eco24I	GRGCYC	2 cut(s)	207, 359
Eco47I	GGWCC	1 cut(s)	757
Eco53kI	GAGCTC	1 cut(s)	357
Eco81I	CCTNAGG	1 cut(s)	345
EcoICRI	GAGCTC	1 cut(s)	357
EcoRI	GAATTC	1 cut(s)	741
EcoRII	CCWGG	2 cut(s)	234, 879
EcoT22I	ATGCAT	2 cut(s)	442, 779
EcoT38I	GRGCYC	2 cut(s)	207, 359
FaeI	CATG	7 cut(s)	88, 211, 444, 499, 586, 689, 777
FalI	AAGNNNNNCTT	2 cut(s)	124, 156
FaqI	GGGAC	1 cut(s)	795
FatI	CATG	7 cut(s)	84, 207, 440, 495, 582, 685, 773
FauNDI	CATATG	1 cut(s)	426
Fnu4HI	GCNGC	5 cut(s)	273, 486, 538, 603, 683
FokI	GGATG	1 cut(s)	251
FriOI	GRGCYC	2 cut(s)	207, 359
Fsp4HI	GCNGC	5 cut(s)	273, 486, 538, 603, 683
FspBI	CTAG	6 cut(s)	80, 317, 414, 626, 731, 892
GluI	GCNGC	5 cut(s)	273, 486, 538, 603, 683
HaeIII	GGCC	1 cut(s)	469
Hin1II	CATG	7 cut(s)	88, 211, 444, 499, 586, 689, 777
HinfI	GANTC	2 cut(s)	36, 410
HphI	GGTGA	4 cut(s)	247, 333, 566, 857
Hpy166II	GTNNAC	3 cut(s)	65, 196, 694
Hpy188I	TCNGA	5 cut(s)	266, 522, 592, 648, 841
Hpy188III	TCNNGA	6 cut(s)	80, 121, 197, 414, 583, 731
Hpy8I	GTNNAC	3 cut(s)	65, 196, 694
HpyAV	CCTTC	5 cut(s)	194, 368, 468, 527, 834
HpyCH4III	ACNGT	4 cut(s)	9, 62, 283, 809
HpyCH4IV	ACGT	1 cut(s)	622
HpyCH4V	TGCA	7 cut(s)	146, 392, 440, 689, 763, 777, 799
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 796
HpyF3I	CTNAG	3 cut(s)	345, 384, 647
HpySE526I	ACGT	1 cut(s)	622
Hsp92II	CATG	7 cut(s)	88, 211, 444, 499, 586, 689, 777
Kzo9I	GATC	2 cut(s)	298, 325
LguI	GCTCTTC	3 cut(s)	171, 347, 564
Lsp1109I	GCAGC	4 cut(s)	284, 472, 549, 589
LweI	GCATC	2 cut(s)	549, 660
MabI	ACCWGGT	1 cut(s)	879
MaeI	CTAG	6 cut(s)	80, 317, 414, 626, 731, 892
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	5 cut(s)	121, 253, 339, 845, 869
MalI	GATC	2 cut(s)	300, 327
MboI	GATC	2 cut(s)	298, 325
MboII	GAAGA	8 cut(s)	101, 188, 260, 364, 419, 581, 674, 849
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	3 cut(s)	112, 207, 359
MlyI	GAGTC	1 cut(s)	419
MnlI	CCTC	8 cut(s)	85, 340, 630, 660, 664, 667, 835, 865
Mph1103I	ATGCAT	2 cut(s)	442, 779
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	2 cut(s)	11, 446
MspR9I	CCNGG	2 cut(s)	236, 881
MunI	CAATTG	1 cut(s)	171
Mva1269I	GAATGC	1 cut(s)	442
MvaI	CCWGG	2 cut(s)	236, 881
MwoI	GCNNNNNNNGC	2 cut(s)	389, 796
NdeI	CATATG	1 cut(s)	426
NdeII	GATC	2 cut(s)	298, 325
NlaIII	CATG	7 cut(s)	88, 211, 444, 499, 586, 689, 777
NmuCI	GTSAC	5 cut(s)	121, 253, 339, 845, 869
NsiI	ATGCAT	2 cut(s)	442, 779
NspI	RCATGY	2 cut(s)	444, 689
NspV	TTCGAA	1 cut(s)	567
PaeI	GCATGC	1 cut(s)	689
PagI	TCATGA	1 cut(s)	582
PciSI	GCTCTTC	3 cut(s)	171, 347, 564
PctI	GAATGC	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	36
PkrI	GCNGC	5 cut(s)	274, 487, 539, 604, 684
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
PsiI	TTATAA	1 cut(s)	632
Psp124BI	GAGCTC	1 cut(s)	359
Psp6I	CCWGG	2 cut(s)	234, 879
PspGI	CCWGG	2 cut(s)	234, 879
PspPI	GGNCC	1 cut(s)	757
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	2 cut(s)	212, 818
RsaNI	GTAC	2 cut(s)	211, 817
SacI	GAGCTC	1 cut(s)	359
SapI	GCTCTTC	3 cut(s)	171, 347, 564
SaqAI	TTAA	2 cut(s)	11, 446
SatI	GCNGC	5 cut(s)	273, 486, 538, 603, 683
Sau3AI	GATC	2 cut(s)	298, 325
Sau96I	GGNCC	1 cut(s)	757
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	2 cut(s)	236, 881
SduI	GDGCHC	3 cut(s)	112, 207, 359
SexAI	ACCWGGT	1 cut(s)	879
SfaNI	GCATC	2 cut(s)	549, 660
SfuI	TTCGAA	1 cut(s)	567
SinI	GGWCC	1 cut(s)	757
SphI	GCATGC	1 cut(s)	689
SsiI	CCGC	2 cut(s)	331, 682
SspI	AATATT	1 cut(s)	727
SspMI	CTAG	6 cut(s)	80, 317, 414, 626, 731, 892
SstI	GAGCTC	1 cut(s)	359
StyD4I	CCNGG	2 cut(s)	234, 879
TaaI	ACNGT	4 cut(s)	9, 62, 283, 809
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	1 cut(s)	567
TatI	WGTACW	2 cut(s)	210, 816
TauI	GCSGC	1 cut(s)	685
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	2 cut(s)	11, 446
Tru9I	TTAA	2 cut(s)	11, 446
TscAI	CASTG	2 cut(s)	67, 288
TseFI	GTSAC	5 cut(s)	121, 253, 339, 845, 869
TseI	GCWGC	4 cut(s)	272, 485, 537, 602
Tsp45I	GTSAC	5 cut(s)	121, 253, 339, 845, 869
TspDTI	ATGAA	4 cut(s)	17, 539, 546, 762
TspRI	CASTG	2 cut(s)	67, 288
VpaK11BI	GGWCC	1 cut(s)	757
XapI	RAATTY	3 cut(s)	217, 741, 768
XbaI	TCTAGA	3 cut(s)	79, 413, 730
XceI	RCATGY	2 cut(s)	444, 689
XcmI	CCANNNNNNNNNTGG	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	6 cut(s)	80, 317, 414, 626, 731, 892
Zsp2I	ATGCAT	2 cut(s)	442, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.