Rmu_sc0008159.1_g000011

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008159.1
Physical Location & Seq
Forward (+)
44733 .. 46541
1809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008159.1_g000011.1.cds

Sequence Viewer

Length: 1809 bp
atgaaaatcggctgcaacgtcgatggagacctcaaccagggaaagttcagtgcccctatgccttggattgggatttatgtaacagcaacatccttggcatgtctagttacaatggctgcagatgtcatccatggcattcgtcaccggaaactctggttcccttgcaggtatttctcaatcaatgcaacttctctgaccctgatagctgtggcaatcaaattgtcagtagatctaaacaccgctatgcctagccgccaggatcagcttgcaaagctcagcagctcggtcttggtctgcacagtaatgggtaactctatgccttcccttggagctatggaaaatgaagaactattcatgaatgttattgcttttggaatattagtagttacccttattgtgaatatctgcatccaattagctactggtgcaatctttgttttctggaaggagcatgcttgtgttatgttcatcatgcttgttttgcttatcatgctgagtttctctgctttaactgttccgatttgtaagcattacttagagcacaagtacaacaagaggtatcaattagctctgaaagagagctcaaatgaaactggtaaaagacttgtttgcaaaattagggaggatctgatgaaatattggatgatggctcatacctctagcccccagtttgttatgggtcgatcagcgacatgcacagcttctggagcaatctgtctcttgagtttcctgattctagcagaggccatacttcgaacttacttgatgccctggtcatttaaattttgtagcggtgagtctgactacaagtggccgaccactttggttcttgttacacagacagtagcagtagcagtaggaacaattgctccagcatctagatggttcatcgccataaacttcaggtgtgcaaaaagaggaaatgccacctacaaaggagaatttaaagtagaaaagtactggatccagggactggtggagttgaaagactgtccattaactttaagaatcagaagcaggcactgcaggaaacttgctcatgacacaaaaaataaacttttggacttgtgtattggaatgcagaaagaaaatgtcataatgagcaaagcaattcggcttatttccattttctttgtaagcaagatcttgatatgctgcgacttctgcaaggagtggaagaagaatttcaaatgcaacactgtttccaacgacttgagcttagagtcatcacaatcgagctcaagcttagaacatcttacctgttatgttttgcatcttgaaggggaggatgcattagttgagcacatgacgaaaagcaattgtgatgctactgatcattggttccaaaggggaaggaggagtgagcctaaacatctgatcaaattgttggagaaatcaacattttcacaaggatttaaaggagtagcagctttcgacaacgacaaagttccctctctagatggtgaagaacctccaaattgttgggctctaccagttgcaacactagccagtattgctcttgcacttccaaacatcagcagttcttcgataaaagggttaatgcgtggtgtaaacgaagggctcatgtacataaatttcattgaaaatcacctggaaagtaaagatcttaccaacattaggaaggcagcaacccatgtctggctaggagtcgatctctatcacacatggctggatgtggatctccataaactgtcacttcaggggaaaagctcaaaggaaatacttgaagaactttctgaaactgcaaaagtcaaatacgaagattctaaaaaagccaaacagctataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

602

Amino Acids

67.61

Weight (kDa)

8.84

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 156
AccB7I CCANNNNNTGG 1 cut(s) 973
AciI CCGC 3 cut(s) 240, 253, 792
AclWI GGATC 5 cut(s) 267, 633, 958, 971, 1707
AcoI YGGCCR 1 cut(s) 812
AcsI RAATTY 4 cut(s) 782, 941, 1183, 1594
AcuI CTGAAG 2 cut(s) 886, 1703
AfaI GTAC 3 cut(s) 548, 959, 1589
AfiI CCNNNNNNNGG 6 cut(s) 37, 68, 326, 973, 1638, 1659
AgsI TTSAA 5 cut(s) 985, 1189, 1280, 1604, 1748
AjnI CCWGG 5 cut(s) 36, 255, 770, 966, 1611
AloI GAACNNNNNNTCC 2 cut(s) 853, 885
Alw21I GWGCWC 4 cut(s) 543, 584, 1241, 1305
Alw26I GTCTC 2 cut(s) 21, 722
AlwI GGATC 5 cut(s) 267, 633, 958, 971, 1707
AlwNI CAGNNNCTG 3 cut(s) 704, 973, 1023
AoxI GGCC 2 cut(s) 744, 812
ApeKI GCWGC 6 cut(s) 12, 116, 279, 1155, 1427, 1646
ApoI RAATTY 4 cut(s) 782, 941, 1183, 1594
Asp700I GAANNNNTTC 1 cut(s) 1184
AsuHPI GGTGA 4 cut(s) 134, 806, 1475, 1601
AsuII TTCGAA 1 cut(s) 754
BaeGI GKGCMC 1 cut(s) 55
BamHI GGATCC 1 cut(s) 963
BanII GRGCYC 4 cut(s) 584, 1241, 1489, 1584
Bbv12I GWGCWC 4 cut(s) 543, 584, 1241, 1305
BbvI GCAGC 5 cut(s) 103, 291, 1142, 1439, 1658
BccI CCATC 4 cut(s) 17, 640, 876, 1454
BciT130I CCWGG 5 cut(s) 38, 257, 772, 968, 1613
BclI TGATCA 2 cut(s) 1333, 1377
BcoDI GTCTC 2 cut(s) 21, 722
BfaI CTAG 8 cut(s) 104, 249, 660, 737, 879, 1457, 1505, 1664
BfmI CTRYAG 2 cut(s) 117, 1024
BfuAI ACCTGC 1 cut(s) 156
BglII AGATCT 3 cut(s) 229, 1143, 1624
BisI GCNGC 7 cut(s) 13, 117, 253, 280, 1156, 1428, 1647
BlpI GCTNAGC 1 cut(s) 275
BlsI GCNGC 7 cut(s) 14, 118, 254, 281, 1157, 1429, 1648
BmcAI AGTACT 1 cut(s) 959
Bme1390I CCNGG 5 cut(s) 38, 257, 772, 968, 1613
BmiI GGNNCC 3 cut(s) 158, 965, 1343
BmrFI CCNGG 5 cut(s) 38, 257, 772, 968, 1613
BmrI ACTGGG 1 cut(s) 661
BmsI GCATC 6 cut(s) 417, 756, 884, 1279, 1282, 1315
BmuI ACTGGG 1 cut(s) 661
BplI GAGNNNNNCTC 2 cut(s) 1659, 1691
BpmI CTGGAG 2 cut(s) 726, 855
Bpu1102I GCTNAGC 1 cut(s) 275
Bpu14I TTCGAA 1 cut(s) 754
BpuEI CTTGAG 3 cut(s) 742, 1225, 1234
BsaBI GATNNNNATC 2 cut(s) 1677, 1698
BsaI GGTCTC 1 cut(s) 21
BsaJI CCNNGG 7 cut(s) 37, 62, 93, 130, 325, 770, 967
BsaWI WCCGGW 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 853, 883
Bsc4I CCNNNNNNNGG 6 cut(s) 37, 68, 326, 973, 1638, 1659
Bse1I ACTGG 7 cut(s) 427, 598, 667, 965, 978, 1493, 1509
Bse8I GATNNNNATC 2 cut(s) 1677, 1698
BseBI CCWGG 5 cut(s) 38, 257, 772, 968, 1613
BseDI CCNNGG 7 cut(s) 37, 62, 93, 130, 325, 770, 967
BseGI GGATG 6 cut(s) 89, 126, 408, 648, 1294, 1699
BseJI GATNNNNATC 2 cut(s) 1677, 1698
BseLI CCNNNNNNNGG 6 cut(s) 37, 68, 326, 973, 1638, 1659
BseMII CTCAG 2 cut(s) 289, 485
BseNI ACTGG 7 cut(s) 427, 598, 667, 965, 978, 1493, 1509
BseRI GAGGAG 1 cut(s) 1372
BseSI GKGCMC 1 cut(s) 55
BseXI GCAGC 5 cut(s) 103, 291, 1142, 1439, 1658
BsgI GTGCAG 1 cut(s) 280
BshFI GGCC 2 cut(s) 746, 814
BsiHKAI GWGCWC 4 cut(s) 543, 584, 1241, 1305
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 1 cut(s) 984
BslI CCNNNNNNNGG 6 cut(s) 37, 68, 326, 973, 1638, 1659
BsmAI GTCTC 2 cut(s) 21, 722
BsmFI GGGAC 1 cut(s) 984
BsmI GAATGC 2 cut(s) 135, 1083
BsnI GGCC 2 cut(s) 746, 814
Bso31I GGTCTC 1 cut(s) 21
Bsp119I TTCGAA 1 cut(s) 754
Bsp1286I GDGCHC 7 cut(s) 55, 543, 584, 1241, 1305, 1489, 1584
Bsp1407I TGTACA 1 cut(s) 1587
Bsp1720I GCTNAGC 1 cut(s) 275
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 3 cut(s) 240, 253, 792
BspANI GGCC 2 cut(s) 746, 814
BspCNI CTCAG 2 cut(s) 288, 486
BspHI TCATGA 2 cut(s) 354, 1039
BspLI GGNNCC 3 cut(s) 158, 965, 1343
BspMAI CTGCAG 2 cut(s) 121, 1028
BspMI ACCTGC 1 cut(s) 156
BspPI GGATC 5 cut(s) 267, 633, 958, 971, 1707
BspT104I TTCGAA 1 cut(s) 754
BspTNI GGTCTC 1 cut(s) 21
BsrGI TGTACA 1 cut(s) 1587
BsrI ACTGG 7 cut(s) 427, 598, 667, 965, 978, 1493, 1509
BssECI CCNNGG 7 cut(s) 37, 62, 93, 130, 325, 770, 967
BssT1I CCWWGG 4 cut(s) 62, 93, 130, 325
Bst2UI CCWGG 5 cut(s) 38, 257, 772, 968, 1613
Bst4CI ACNGT 6 cut(s) 301, 514, 844, 992, 1201, 1713
BstAPI GCANNNNNTGC 1 cut(s) 1023
BstAUI TGTACA 1 cut(s) 1587
BstBI TTCGAA 1 cut(s) 754
BstC8I GCNNGC 3 cut(s) 267, 453, 1019
BstDEI CTNAG 5 cut(s) 275, 494, 535, 1219, 1246
BstDSI CCRYGG 1 cut(s) 130
BstENI CCTNNNNNAGG 1 cut(s) 35
BstF5I GGATG 6 cut(s) 89, 126, 408, 648, 1294, 1699
BstMAI GTCTC 2 cut(s) 21, 722
BstMWI GCNNNNNNNGC 9 cut(s) 271, 425, 481, 490, 707, 1023, 1164, 1505, 1514
BstNI CCWGG 5 cut(s) 38, 257, 772, 968, 1613
BstNSI RCATGY 3 cut(s) 102, 455, 696
BstSCI CCNGG 5 cut(s) 36, 255, 770, 966, 1611
BstSFI CTRYAG 2 cut(s) 117, 1024
BstSLI GKGCMC 1 cut(s) 55
BstV1I GCAGC 5 cut(s) 103, 291, 1142, 1439, 1658
BstX2I RGATCY 6 cut(s) 229, 625, 963, 1143, 1624, 1699
BstXI CCANNNNNNTGG 1 cut(s) 1482
BstYI RGATCY 6 cut(s) 229, 625, 963, 1143, 1624, 1699
BsuRI GGCC 2 cut(s) 746, 814
BtgI CCRYGG 1 cut(s) 130
BtgZI GCGATG 1 cut(s) 874
BtsCI GGATG 6 cut(s) 89, 126, 408, 648, 1294, 1699
BtsI GCAGTG 1 cut(s) 1021
BtsIMutI CAGTG 3 cut(s) 55, 1021, 1197
BveI ACCTGC 1 cut(s) 156
Cac8I GCNNGC 3 cut(s) 267, 453, 1019
CaiI CAGNNNCTG 3 cut(s) 704, 973, 1023
CciI TCATGA 2 cut(s) 354, 1039
Csp6I GTAC 3 cut(s) 547, 958, 1588
CviQI GTAC 3 cut(s) 547, 958, 1588
DdeI CTNAG 5 cut(s) 275, 494, 535, 1219, 1246
DraI TTTAAA 3 cut(s) 781, 946, 1417
EaeI YGGCCR 1 cut(s) 812
Ecl136II GAGCTC 2 cut(s) 582, 1239
Eco130I CCWWGG 4 cut(s) 62, 93, 130, 325
Eco24I GRGCYC 4 cut(s) 584, 1241, 1489, 1584
Eco31I GGTCTC 1 cut(s) 21
Eco53kI GAGCTC 2 cut(s) 582, 1239
Eco57I CTGAAG 2 cut(s) 886, 1703
EcoICRI GAGCTC 2 cut(s) 582, 1239
EcoNI CCTNNNNNAGG 1 cut(s) 35
EcoRII CCWGG 5 cut(s) 36, 255, 770, 966, 1611
EcoT14I CCWWGG 4 cut(s) 62, 93, 130, 325
EcoT22I ATGCAT 1 cut(s) 1294
EcoT38I GRGCYC 4 cut(s) 584, 1241, 1489, 1584
ErhI CCWWGG 4 cut(s) 62, 93, 130, 325
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FaqI GGGAC 1 cut(s) 984
FbaI TGATCA 2 cut(s) 1333, 1377
Fnu4HI GCNGC 7 cut(s) 13, 117, 253, 280, 1156, 1428, 1647
FokI GGATG 6 cut(s) 76, 113, 395, 655, 1301, 1706
FriOI GRGCYC 4 cut(s) 584, 1241, 1489, 1584
Fsp4HI GCNGC 7 cut(s) 13, 117, 253, 280, 1156, 1428, 1647
FspBI CTAG 8 cut(s) 104, 249, 660, 737, 879, 1457, 1505, 1664
GluI GCNGC 7 cut(s) 13, 117, 253, 280, 1156, 1428, 1647
GsuI CTGGAG 2 cut(s) 726, 855
HaeIII GGCC 2 cut(s) 746, 814
HapII CCGG 1 cut(s) 145
HindIII AAGCTT 1 cut(s) 1243
HinfI GANTC 6 cut(s) 733, 797, 1008, 1223, 1668, 1784
HpaII CCGG 1 cut(s) 145
HphI GGTGA 4 cut(s) 134, 806, 1475, 1601
Hpy166II GTNNAC 1 cut(s) 1573
Hpy188I TCNGA 8 cut(s) 195, 519, 573, 630, 802, 1013, 1377, 1759
Hpy8I GTNNAC 1 cut(s) 1573
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 6 cut(s) 330, 439, 1274, 1347, 1571, 1636
HpyCH4III ACNGT 6 cut(s) 301, 514, 844, 992, 1201, 1713
HpyCH4IV ACGT 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 9 cut(s) 271, 425, 481, 490, 707, 1023, 1164, 1505, 1514
HpyF3I CTNAG 5 cut(s) 275, 494, 535, 1219, 1246
HpySE526I ACGT 1 cut(s) 18
Ksp22I TGATCA 2 cut(s) 1333, 1377
LmnI GCTCC 4 cut(s) 329, 448, 707, 874
Lsp1109I GCAGC 5 cut(s) 103, 291, 1142, 1439, 1658
LweI GCATC 6 cut(s) 417, 756, 884, 1279, 1282, 1315
MaeI CTAG 8 cut(s) 104, 249, 660, 737, 879, 1457, 1505, 1664
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 7 cut(s) 79, 106, 140, 308, 385, 832, 1713
MboII GAAGA 7 cut(s) 356, 1189, 1192, 1478, 1536, 1760, 1793
MfeI CAATTG 2 cut(s) 864, 1318
MflI RGATCY 6 cut(s) 229, 625, 963, 1143, 1624, 1699
MhlI GDGCHC 7 cut(s) 55, 543, 584, 1241, 1305, 1489, 1584
MlyI GAGTC 3 cut(s) 806, 1232, 1677
MmeI TCCRAC 2 cut(s) 1230, 1368
Mph1103I ATGCAT 1 cut(s) 1294
MroXI GAANNNNTTC 1 cut(s) 1184
MseI TTAA 7 cut(s) 509, 780, 945, 998, 1004, 1416, 1559
MslI CAYNNNNRTG 4 cut(s) 242, 302, 456, 880
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 5 cut(s) 38, 257, 772, 968, 1613
MunI CAATTG 2 cut(s) 864, 1318
Mva1269I GAATGC 2 cut(s) 135, 1083
MvaI CCWGG 5 cut(s) 38, 257, 772, 968, 1613
MwoI GCNNNNNNNGC 9 cut(s) 271, 425, 481, 490, 707, 1023, 1164, 1505, 1514
NcoI CCATGG 1 cut(s) 130
NlaIV GGNNCC 3 cut(s) 158, 965, 1343
NmuCI GTSAC 2 cut(s) 140, 1713
NsiI ATGCAT 1 cut(s) 1294
NspI RCATGY 3 cut(s) 102, 455, 696
NspV TTCGAA 1 cut(s) 754
PaeI GCATGC 1 cut(s) 455
PagI TCATGA 2 cut(s) 354, 1039
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PctI GAATGC 2 cut(s) 135, 1083
PdmI GAANNNNTTC 1 cut(s) 1184
PfeI GAWTC 3 cut(s) 733, 1008, 1784
PflMI CCANNNNNTGG 1 cut(s) 973
PkrI GCNGC 7 cut(s) 14, 118, 254, 281, 1157, 1429, 1648
PleI GAGTC 3 cut(s) 805, 1231, 1676
PpsI GAGTC 3 cut(s) 805, 1231, 1676
Psp124BI GAGCTC 2 cut(s) 584, 1241
Psp6I CCWGG 5 cut(s) 36, 255, 770, 966, 1611
PspGI CCWGG 5 cut(s) 36, 255, 770, 966, 1611
PspN4I GGNNCC 3 cut(s) 158, 965, 1343
PstI CTGCAG 2 cut(s) 121, 1028
PstNI CAGNNNCTG 3 cut(s) 704, 973, 1023
PsuI RGATCY 6 cut(s) 229, 625, 963, 1143, 1624, 1699
RsaI GTAC 3 cut(s) 548, 959, 1589
RsaNI GTAC 3 cut(s) 547, 958, 1588
RseI CAYNNNNRTG 4 cut(s) 242, 302, 456, 880
SacI GAGCTC 2 cut(s) 584, 1241
SaqAI TTAA 7 cut(s) 509, 780, 945, 998, 1004, 1416, 1559
SatI GCNGC 7 cut(s) 13, 117, 253, 280, 1156, 1428, 1647
ScaI AGTACT 1 cut(s) 959
SchI GAGTC 3 cut(s) 806, 1232, 1677
ScrFI CCNGG 5 cut(s) 38, 257, 772, 968, 1613
SduI GDGCHC 7 cut(s) 55, 543, 584, 1241, 1305, 1489, 1584
SfaNI GCATC 6 cut(s) 417, 756, 884, 1279, 1282, 1315
SfcI CTRYAG 2 cut(s) 117, 1024
SfuI TTCGAA 1 cut(s) 754
SmiI ATTTAAAT 1 cut(s) 781
SmiMI CAYNNNNRTG 4 cut(s) 242, 302, 456, 880
SmlI CTYRAG 3 cut(s) 721, 1213, 1240
SmoI CTYRAG 3 cut(s) 721, 1213, 1240
SphI GCATGC 1 cut(s) 455
SsiI CCGC 3 cut(s) 240, 253, 792
SspI AATATT 2 cut(s) 378, 638
SspMI CTAG 8 cut(s) 104, 249, 660, 737, 879, 1457, 1505, 1664
SstI GAGCTC 2 cut(s) 584, 1241
StyD4I CCNGG 5 cut(s) 36, 255, 770, 966, 1611
StyI CCWWGG 4 cut(s) 62, 93, 130, 325
SwaI ATTTAAAT 1 cut(s) 781
TaaI ACNGT 6 cut(s) 301, 514, 844, 992, 1201, 1713
TaiI ACGT 1 cut(s) 21
TaqI TCGA 7 cut(s) 21, 682, 754, 1235, 1434, 1547, 1671
TaqII GACCGA 1 cut(s) 274
TatI WGTACW 3 cut(s) 546, 957, 1587
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 3 cut(s) 733, 1008, 1784
Tru1I TTAA 7 cut(s) 509, 780, 945, 998, 1004, 1416, 1559
Tru9I TTAA 7 cut(s) 509, 780, 945, 998, 1004, 1416, 1559
TscAI CASTG 3 cut(s) 55, 1028, 1204
TseFI GTSAC 2 cut(s) 140, 1713
TseI GCWGC 6 cut(s) 12, 116, 279, 1155, 1427, 1646
Tsp45I GTSAC 2 cut(s) 140, 1713
TspDTI ATGAA 9 cut(s) 17, 343, 357, 371, 457, 603, 647, 877, 1588
TspRI CASTG 3 cut(s) 55, 1028, 1204
Van91I CCANNNNNTGG 1 cut(s) 973
XagI CCTNNNNNAGG 1 cut(s) 35
XapI RAATTY 4 cut(s) 782, 941, 1183, 1594
XbaI TCTAGA 2 cut(s) 878, 1456
XceI RCATGY 3 cut(s) 102, 455, 696
XcmI CCANNNNNNNNNTGG 2 cut(s) 419, 879
XmnI GAANNNNTTC 1 cut(s) 1184
XspI CTAG 8 cut(s) 104, 249, 660, 737, 879, 1457, 1505, 1664
ZrmI AGTACT 1 cut(s) 959
Zsp2I ATGCAT 1 cut(s) 1294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.