asparagine-tRNA ligase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G17300 AT4G17300 |
| fragaria_vesca | FvH4_1g25310 |
| malus_domestica | MD06G1059300.v1.1 |
| prunus_persica | Prupe.5G070100_v2.0.a1 Prupe.5G070100_v2.0.a1 |
| pyrus_communis | pycom06g04930 |
| rosa_chinensis | RchiOBHm_Chr2g0123321 |
| rosa_multiflora | Rmu_sc0001917.1_g000001 Rmu_sc0021262.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00120780 |
| rosa_rugosa | Rorug02G0244500 |
| rosa_samantha | Rh2AG303600 Rh2BG311700 Rh2CG290200 Rh2DG327600 |
| rosa_wichuraiana | Rw2G024300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1693 |
| Acc36I | ACCTGC | 1 cut(s) | 1693 |
| Acc65I | GGTACC | 1 cut(s) | 1560 |
| AccB1I | GGYRCC | 1 cut(s) | 1560 |
| AccBSI | CCGCTC | 2 cut(s) | 302, 965 |
| AccI | GTMKAC | 2 cut(s) | 978, 1357 |
| AccII | CGCG | 1 cut(s) | 1678 |
| AclWI | GGATC | 2 cut(s) | 595, 1314 |
| AcoI | YGGCCR | 2 cut(s) | 6, 150 |
| AcsI | RAATTY | 8 cut(s) | 260, 418, 626, 1009, 1037, 1254, 1277, 1697 |
| AcuI | CTGAAG | 1 cut(s) | 306 |
| AcyI | GRCGYC | 1 cut(s) | 1245 |
| AfaI | GTAC | 8 cut(s) | 358, 504, 511, 1115, 1127, 1238, 1331, 1562 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 933, 1041, 1463, 1492, 1598 |
| AflII | CTTAAG | 1 cut(s) | 551 |
| AflIII | ACRYGT | 1 cut(s) | 1017 |
| AgsI | TTSAA | 4 cut(s) | 728, 1052, 1253, 1534 |
| AjiI | CACGTC | 1 cut(s) | 1020 |
| AjnI | CCWGG | 2 cut(s) | 525, 1074 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1332, 1364 |
| Alw26I | GTCTC | 5 cut(s) | 897, 934, 1368, 1615, 1653 |
| AlwI | GGATC | 2 cut(s) | 595, 1314 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 500 |
| AoxI | GGCC | 3 cut(s) | 6, 150, 1089 |
| ApeKI | GCWGC | 1 cut(s) | 1436 |
| ApoI | RAATTY | 8 cut(s) | 260, 418, 626, 1009, 1037, 1254, 1277, 1697 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1257 |
| Asp718I | GGTACC | 1 cut(s) | 1560 |
| AspLEI | GCGC | 1 cut(s) | 1680 |
| AspS9I | GGNCC | 2 cut(s) | 989, 1627 |
| AsuC2I | CCSGG | 1 cut(s) | 623 |
| AsuHPI | GGTGA | 4 cut(s) | 67, 218, 1303, 1630 |
| AsuNHI | GCTAGC | 1 cut(s) | 521 |
| AvaII | GGWCC | 2 cut(s) | 989, 1627 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 501, 534 |
| BanI | GGYRCC | 1 cut(s) | 1560 |
| BbsI | GAAGAC | 2 cut(s) | 1155, 1433 |
| BbvI | GCAGC | 1 cut(s) | 1448 |
| BccI | CCATC | 3 cut(s) | 203, 395, 1415 |
| BceAI | ACGGC | 1 cut(s) | 105 |
| BciT130I | CCWGG | 2 cut(s) | 527, 1076 |
| BclI | TGATCA | 1 cut(s) | 457 |
| BcnI | CCSGG | 1 cut(s) | 623 |
| BcoDI | GTCTC | 5 cut(s) | 897, 934, 1368, 1615, 1653 |
| BfaI | CTAG | 4 cut(s) | 522, 657, 822, 1610 |
| BfmI | CTRYAG | 2 cut(s) | 1226, 1310 |
| BfrI | CTTAAG | 1 cut(s) | 551 |
| BfuAI | ACCTGC | 1 cut(s) | 1693 |
| BisI | GCNGC | 5 cut(s) | 6, 118, 1195, 1437, 1576 |
| BlsI | GCNGC | 5 cut(s) | 7, 119, 1196, 1438, 1577 |
| Bme1390I | CCNGG | 3 cut(s) | 527, 623, 1076 |
| Bme18I | GGWCC | 2 cut(s) | 989, 1627 |
| BmgBI | CACGTC | 1 cut(s) | 1020 |
| BmgT120I | GGNCC | 2 cut(s) | 989, 1627 |
| BmiI | GGNNCC | 2 cut(s) | 202, 1562 |
| BmrFI | CCNGG | 3 cut(s) | 527, 623, 1076 |
| BmsI | GCATC | 5 cut(s) | 130, 158, 433, 500, 844 |
| BmtI | GCTAGC | 1 cut(s) | 525 |
| BpiI | GAAGAC | 2 cut(s) | 1155, 1433 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 572, 604 |
| BpmI | CTGGAG | 2 cut(s) | 507, 1094 |
| BpuEI | CTTGAG | 3 cut(s) | 652, 1219, 1523 |
| BpuMI | CCSGG | 1 cut(s) | 623 |
| Bsa29I | ATCGAT | 1 cut(s) | 885 |
| BsaAI | YACGTR | 1 cut(s) | 1117 |
| BsaHI | GRCGYC | 1 cut(s) | 1245 |
| BsaI | GGTCTC | 1 cut(s) | 897 |
| BsaJI | CCNNGG | 3 cut(s) | 526, 639, 1457 |
| BsaWI | WCCGGW | 3 cut(s) | 203, 1288, 1640 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 480, 510 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 933, 1041, 1463, 1492, 1598 |
| Bse118I | RCCGGY | 1 cut(s) | 19 |
| Bse1I | ACTGG | 4 cut(s) | 490, 1111, 1559, 1629 |
| Bse3DI | GCAATG | 2 cut(s) | 431, 1446 |
| BseBI | CCWGG | 2 cut(s) | 527, 1076 |
| BseCI | ATCGAT | 1 cut(s) | 885 |
| BseDI | CCNNGG | 3 cut(s) | 526, 639, 1457 |
| BseGI | GGATG | 3 cut(s) | 448, 1050, 1084 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 933, 1041, 1463, 1492, 1598 |
| BseMI | GCAATG | 2 cut(s) | 431, 1446 |
| BseMII | CTCAG | 6 cut(s) | 305, 383, 908, 984, 996, 1203 |
| BseNI | ACTGG | 4 cut(s) | 490, 1111, 1559, 1629 |
| BseRI | GAGGAG | 1 cut(s) | 312 |
| BseXI | GCAGC | 1 cut(s) | 1448 |
| BseYI | CCCAGC | 1 cut(s) | 1231 |
| Bsh1236I | CGCG | 1 cut(s) | 1678 |
| BshFI | GGCC | 3 cut(s) | 8, 152, 1091 |
| BshNI | GGYRCC | 1 cut(s) | 1560 |
| BshVI | ATCGAT | 1 cut(s) | 885 |
| BsiSI | CCGG | 7 cut(s) | 20, 149, 163, 204, 622, 1289, 1641 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 933, 1041, 1463, 1492, 1598 |
| BsmAI | GTCTC | 5 cut(s) | 897, 934, 1368, 1615, 1653 |
| BsmBI | CGTCTC | 2 cut(s) | 934, 1653 |
| BsmI | GAATGC | 2 cut(s) | 917, 1397 |
| BsnI | GGCC | 3 cut(s) | 8, 152, 1091 |
| Bso31I | GGTCTC | 1 cut(s) | 897 |
| Bsp1407I | TGTACA | 1 cut(s) | 502 |
| Bsp143I | GATC | 7 cut(s) | 365, 457, 477, 600, 882, 1306, 1389 |
| BspANI | GGCC | 3 cut(s) | 8, 152, 1091 |
| BspCNI | CTCAG | 6 cut(s) | 306, 382, 907, 983, 997, 1204 |
| BspDI | ATCGAT | 1 cut(s) | 885 |
| BspFNI | CGCG | 1 cut(s) | 1678 |
| BspLI | GGNNCC | 2 cut(s) | 202, 1562 |
| BspMAI | CTGCAG | 1 cut(s) | 1314 |
| BspMI | ACCTGC | 1 cut(s) | 1693 |
| BspOI | GCTAGC | 1 cut(s) | 525 |
| BspPI | GGATC | 2 cut(s) | 595, 1314 |
| BspT107I | GGYRCC | 1 cut(s) | 1560 |
| BspTI | CTTAAG | 1 cut(s) | 551 |
| BspTNI | GGTCTC | 1 cut(s) | 897 |
| BsrBI | CCGCTC | 2 cut(s) | 302, 965 |
| BsrDI | GCAATG | 2 cut(s) | 431, 1446 |
| BsrFI | RCCGGY | 1 cut(s) | 19 |
| BsrGI | TGTACA | 1 cut(s) | 502 |
| BsrI | ACTGG | 4 cut(s) | 490, 1111, 1559, 1629 |
| BssAI | RCCGGY | 1 cut(s) | 19 |
| BssECI | CCNNGG | 3 cut(s) | 526, 639, 1457 |
| BssMI | GATC | 7 cut(s) | 365, 457, 477, 600, 882, 1306, 1389 |
| BssNAI | GTATAC | 1 cut(s) | 979 |
| BssNI | GRCGYC | 1 cut(s) | 1245 |
| BssT1I | CCWWGG | 1 cut(s) | 639 |
| Bst1107I | GTATAC | 1 cut(s) | 979 |
| Bst2UI | CCWGG | 2 cut(s) | 527, 1076 |
| Bst4CI | ACNGT | 3 cut(s) | 798, 928, 1432 |
| Bst6I | CTCTTC | 3 cut(s) | 107, 595, 1335 |
| BstACI | GRCGYC | 1 cut(s) | 1245 |
| BstAFI | CTTAAG | 1 cut(s) | 551 |
| BstAUI | TGTACA | 1 cut(s) | 502 |
| BstBAI | YACGTR | 1 cut(s) | 1117 |
| BstC8I | GCNNGC | 3 cut(s) | 21, 523, 754 |
| BstDEI | CTNAG | 7 cut(s) | 314, 369, 894, 970, 1005, 1030, 1212 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1461, 1596 |
| BstF5I | GGATG | 3 cut(s) | 448, 1050, 1084 |
| BstFNI | CGCG | 1 cut(s) | 1678 |
| BstHHI | GCGC | 1 cut(s) | 1680 |
| BstKTI | GATC | 7 cut(s) | 368, 460, 480, 603, 885, 1309, 1392 |
| BstMAI | GTCTC | 5 cut(s) | 897, 934, 1368, 1615, 1653 |
| BstMBI | GATC | 7 cut(s) | 365, 457, 477, 600, 882, 1306, 1389 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 149, 168, 1309, 1318 |
| BstNI | CCWGG | 2 cut(s) | 527, 1076 |
| BstSCI | CCNGG | 3 cut(s) | 525, 621, 1074 |
| BstSFI | CTRYAG | 2 cut(s) | 1226, 1310 |
| BstSNI | TACGTA | 1 cut(s) | 1117 |
| BstUI | CGCG | 1 cut(s) | 1678 |
| BstV1I | GCAGC | 1 cut(s) | 1448 |
| BstV2I | GAAGAC | 2 cut(s) | 1155, 1433 |
| BstX2I | RGATCY | 1 cut(s) | 1306 |
| BstYI | RGATCY | 1 cut(s) | 1306 |
| BstZ17I | GTATAC | 1 cut(s) | 979 |
| Bsu15I | ATCGAT | 1 cut(s) | 885 |
| BsuRI | GGCC | 3 cut(s) | 8, 152, 1091 |
| BsuTUI | ATCGAT | 1 cut(s) | 885 |
| BtrI | CACGTC | 1 cut(s) | 1020 |
| BtsCI | GGATG | 3 cut(s) | 448, 1050, 1084 |
| BtsI | GCAGTG | 2 cut(s) | 382, 1098 |
| BtsIMutI | CAGTG | 3 cut(s) | 382, 1098, 1437 |
| BveI | ACCTGC | 1 cut(s) | 1693 |
| Cac8I | GCNNGC | 3 cut(s) | 21, 523, 754 |
| CaiI | CAGNNNCTG | 1 cut(s) | 500 |
| CfoI | GCGC | 1 cut(s) | 1680 |
| Cfr10I | RCCGGY | 1 cut(s) | 19 |
| Cfr13I | GGNCC | 2 cut(s) | 989, 1627 |
| ClaI | ATCGAT | 1 cut(s) | 885 |
| CseI | GACGC | 1 cut(s) | 1253 |
| Csp6I | GTAC | 8 cut(s) | 357, 503, 510, 1114, 1126, 1237, 1330, 1561 |
| CviAII | CATG | 7 cut(s) | 408, 830, 1087, 1153, 1170, 1322, 1595 |
| CviQI | GTAC | 8 cut(s) | 357, 503, 510, 1114, 1126, 1237, 1330, 1561 |
| DdeI | CTNAG | 7 cut(s) | 314, 369, 894, 970, 1005, 1030, 1212 |
| DpnI | GATC | 7 cut(s) | 367, 459, 479, 602, 884, 1308, 1391 |
| DpnII | GATC | 7 cut(s) | 365, 457, 477, 600, 882, 1306, 1389 |
| EaeI | YGGCCR | 2 cut(s) | 6, 150 |
| Eam1104I | CTCTTC | 3 cut(s) | 107, 595, 1335 |
| EarI | CTCTTC | 3 cut(s) | 107, 595, 1335 |
| EciI | GGCGGA | 1 cut(s) | 1562 |
| Eco105I | TACGTA | 1 cut(s) | 1117 |
| Eco130I | CCWWGG | 1 cut(s) | 639 |
| Eco31I | GGTCTC | 1 cut(s) | 897 |
| Eco47I | GGWCC | 2 cut(s) | 989, 1627 |
| Eco57I | CTGAAG | 1 cut(s) | 306 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1461, 1596 |
| EcoRI | GAATTC | 5 cut(s) | 260, 626, 1009, 1037, 1697 |
| EcoRII | CCWGG | 2 cut(s) | 525, 1074 |
| EcoT14I | CCWWGG | 1 cut(s) | 639 |
| ErhI | CCWWGG | 1 cut(s) | 639 |
| Esp3I | CGTCTC | 2 cut(s) | 934, 1653 |
| FaeI | CATG | 7 cut(s) | 411, 833, 1090, 1156, 1173, 1325, 1598 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 534, 566, 1506, 1538 |
| FatI | CATG | 7 cut(s) | 407, 829, 1086, 1152, 1169, 1321, 1594 |
| FauI | CCCGC | 2 cut(s) | 1401, 1683 |
| FauNDI | CATATG | 1 cut(s) | 706 |
| FbaI | TGATCA | 1 cut(s) | 457 |
| FblI | GTMKAC | 2 cut(s) | 978, 1357 |
| Fnu4HI | GCNGC | 5 cut(s) | 6, 118, 1195, 1437, 1576 |
| FokI | GGATG | 3 cut(s) | 455, 1057, 1091 |
| Fsp4HI | GCNGC | 5 cut(s) | 6, 118, 1195, 1437, 1576 |
| FspBI | CTAG | 4 cut(s) | 522, 657, 822, 1610 |
| GlaI | GCGC | 1 cut(s) | 1679 |
| GluI | GCNGC | 5 cut(s) | 6, 118, 1195, 1437, 1576 |
| GsaI | CCCAGC | 1 cut(s) | 1235 |
| GsuI | CTGGAG | 2 cut(s) | 507, 1094 |
| HaeIII | GGCC | 3 cut(s) | 8, 152, 1091 |
| HapII | CCGG | 7 cut(s) | 20, 149, 163, 204, 622, 1289, 1641 |
| HgaI | GACGC | 1 cut(s) | 1253 |
| HhaI | GCGC | 1 cut(s) | 1680 |
| Hin1I | GRCGYC | 1 cut(s) | 1245 |
| Hin1II | CATG | 7 cut(s) | 411, 833, 1090, 1156, 1173, 1325, 1598 |
| Hin6I | GCGC | 1 cut(s) | 1678 |
| HinP1I | GCGC | 1 cut(s) | 1678 |
| HincII | GTYRAC | 1 cut(s) | 1358 |
| HindII | GTYRAC | 1 cut(s) | 1358 |
| HinfI | GANTC | 6 cut(s) | 191, 316, 467, 587, 859, 1185 |
| HpaII | CCGG | 7 cut(s) | 20, 149, 163, 204, 622, 1289, 1641 |
| HphI | GGTGA | 4 cut(s) | 67, 218, 1303, 1630 |
| Hpy166II | GTNNAC | 4 cut(s) | 359, 979, 1239, 1358 |
| Hpy188III | TCNNGA | 8 cut(s) | 265, 481, 604, 631, 728, 896, 1042, 1133 |
| Hpy8I | GTNNAC | 4 cut(s) | 359, 979, 1239, 1358 |
| HpyAV | CCTTC | 6 cut(s) | 99, 145, 302, 443, 776, 1378 |
| HpyCH4III | ACNGT | 3 cut(s) | 798, 928, 1432 |
| HpyCH4IV | ACGT | 7 cut(s) | 11, 652, 1019, 1116, 1128, 1206, 1662 |
| HpyCH4V | TGCA | 7 cut(s) | 177, 424, 446, 959, 1143, 1312, 1598 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 149, 168, 1309, 1318 |
| HpyF3I | CTNAG | 7 cut(s) | 314, 369, 894, 970, 1005, 1030, 1212 |
| HpySE526I | ACGT | 7 cut(s) | 11, 652, 1019, 1116, 1128, 1206, 1662 |
| Hsp92I | GRCGYC | 1 cut(s) | 1245 |
| Hsp92II | CATG | 7 cut(s) | 411, 833, 1090, 1156, 1173, 1325, 1598 |
| HspAI | GCGC | 1 cut(s) | 1678 |
| KpnI | GGTACC | 1 cut(s) | 1564 |
| KroI | GCCGGC | 1 cut(s) | 19 |
| KroNI | GCCGGC | 1 cut(s) | 21 |
| Ksp22I | TGATCA | 1 cut(s) | 457 |
| Kzo9I | GATC | 7 cut(s) | 365, 457, 477, 600, 882, 1306, 1389 |
| LmnI | GCTCC | 5 cut(s) | 206, 299, 488, 785, 830 |
| Lsp1109I | GCAGC | 1 cut(s) | 1448 |
| LweI | GCATC | 5 cut(s) | 130, 158, 433, 500, 844 |
| MaeI | CTAG | 4 cut(s) | 522, 657, 822, 1610 |
| MaeII | ACGT | 7 cut(s) | 11, 652, 1019, 1116, 1128, 1206, 1662 |
| MaeIII | GTNAC | 6 cut(s) | 227, 379, 584, 805, 1202, 1636 |
| MalI | GATC | 7 cut(s) | 367, 459, 479, 602, 884, 1308, 1391 |
| MbiI | CCGCTC | 2 cut(s) | 302, 965 |
| MboI | GATC | 7 cut(s) | 365, 457, 477, 600, 882, 1306, 1389 |
| MboII | GAAGA | 8 cut(s) | 64, 94, 582, 619, 1160, 1250, 1352, 1438 |
| MflI | RGATCY | 1 cut(s) | 1306 |
| MlyI | GAGTC | 2 cut(s) | 325, 581 |
| MmeI | TCCRAC | 4 cut(s) | 235, 556, 1038, 1491 |
| MroNI | GCCGGC | 1 cut(s) | 19 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1257 |
| MseI | TTAA | 4 cut(s) | 336, 552, 923, 942 |
| MspA1I | CMGCKG | 2 cut(s) | 182, 1231 |
| MspCI | CTTAAG | 1 cut(s) | 551 |
| MspI | CCGG | 7 cut(s) | 20, 149, 163, 204, 622, 1289, 1641 |
| MspR9I | CCNGG | 3 cut(s) | 527, 623, 1076 |
| Mva1269I | GAATGC | 2 cut(s) | 917, 1397 |
| MvaI | CCWGG | 2 cut(s) | 527, 1076 |
| MvnI | CGCG | 1 cut(s) | 1678 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 149, 168, 1309, 1318 |
| NaeI | GCCGGC | 1 cut(s) | 21 |
| NciI | CCSGG | 1 cut(s) | 623 |
| NdeI | CATATG | 1 cut(s) | 706 |
| NdeII | GATC | 7 cut(s) | 365, 457, 477, 600, 882, 1306, 1389 |
| NgoMIV | GCCGGC | 1 cut(s) | 19 |
| NheI | GCTAGC | 1 cut(s) | 521 |
| NlaIII | CATG | 7 cut(s) | 411, 833, 1090, 1156, 1173, 1325, 1598 |
| NlaIV | GGNNCC | 2 cut(s) | 202, 1562 |
| NmeAIII | GCCGAG | 1 cut(s) | 177 |
| NmuCI | GTSAC | 5 cut(s) | 379, 584, 805, 1202, 1636 |
| PaqCI | CACCTGC | 1 cut(s) | 1693 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 361 |
| PctI | GAATGC | 2 cut(s) | 917, 1397 |
| PdiI | GCCGGC | 1 cut(s) | 21 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1257 |
| PfeI | GAWTC | 4 cut(s) | 191, 467, 859, 1185 |
| PflFI | GACNNNGTC | 1 cut(s) | 315 |
| PkrI | GCNGC | 5 cut(s) | 7, 119, 1196, 1438, 1577 |
| PleI | GAGTC | 2 cut(s) | 324, 581 |
| PpsI | GAGTC | 2 cut(s) | 324, 581 |
| Ppu21I | YACGTR | 1 cut(s) | 1117 |
| Psp6I | CCWGG | 2 cut(s) | 525, 1074 |
| PspFI | CCCAGC | 1 cut(s) | 1231 |
| PspGI | CCWGG | 2 cut(s) | 525, 1074 |
| PspN4I | GGNNCC | 2 cut(s) | 202, 1562 |
| PspPI | GGNCC | 2 cut(s) | 989, 1627 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1113, 1145 |
| PstI | CTGCAG | 1 cut(s) | 1314 |
| PstNI | CAGNNNCTG | 1 cut(s) | 500 |
| PsuI | RGATCY | 1 cut(s) | 1306 |
| PsyI | GACNNNGTC | 1 cut(s) | 315 |
| PvuII | CAGCTG | 2 cut(s) | 182, 1231 |
| RsaI | GTAC | 8 cut(s) | 358, 504, 511, 1115, 1127, 1238, 1331, 1562 |
| RsaNI | GTAC | 8 cut(s) | 357, 503, 510, 1114, 1126, 1237, 1330, 1561 |
| SalI | GTCGAC | 1 cut(s) | 1356 |
| SaqAI | TTAA | 4 cut(s) | 336, 552, 923, 942 |
| SatI | GCNGC | 5 cut(s) | 6, 118, 1195, 1437, 1576 |
| Sau3AI | GATC | 7 cut(s) | 365, 457, 477, 600, 882, 1306, 1389 |
| Sau96I | GGNCC | 2 cut(s) | 989, 1627 |
| SchI | GAGTC | 2 cut(s) | 325, 581 |
| ScrFI | CCNGG | 3 cut(s) | 527, 623, 1076 |
| SfaNI | GCATC | 5 cut(s) | 130, 158, 433, 500, 844 |
| SfcI | CTRYAG | 2 cut(s) | 1226, 1310 |
| SinI | GGWCC | 2 cut(s) | 989, 1627 |
| SmlI | CTYRAG | 4 cut(s) | 551, 631, 1198, 1502 |
| SmoI | CTYRAG | 4 cut(s) | 551, 631, 1198, 1502 |
| SnaBI | TACGTA | 1 cut(s) | 1117 |
| SspMI | CTAG | 4 cut(s) | 522, 657, 822, 1610 |
| StyD4I | CCNGG | 3 cut(s) | 525, 621, 1074 |
| StyI | CCWWGG | 1 cut(s) | 639 |
| TaaI | ACNGT | 3 cut(s) | 798, 928, 1432 |
| TaiI | ACGT | 7 cut(s) | 14, 655, 1022, 1119, 1131, 1209, 1665 |
| TatI | WGTACW | 1 cut(s) | 502 |
| TauI | GCSGC | 4 cut(s) | 8, 120, 1197, 1578 |
| TfiI | GAWTC | 4 cut(s) | 191, 467, 859, 1185 |
| Tru1I | TTAA | 4 cut(s) | 336, 552, 923, 942 |
| Tru9I | TTAA | 4 cut(s) | 336, 552, 923, 942 |
| TscAI | CASTG | 3 cut(s) | 382, 1105, 1437 |
| TseFI | GTSAC | 5 cut(s) | 379, 584, 805, 1202, 1636 |
| TseI | GCWGC | 1 cut(s) | 1436 |
| Tsp45I | GTSAC | 5 cut(s) | 379, 584, 805, 1202, 1636 |
| TspDTI | ATGAA | 3 cut(s) | 376, 396, 1338 |
| TspGWI | ACGGA | 2 cut(s) | 23, 95 |
| TspRI | CASTG | 3 cut(s) | 382, 1105, 1437 |
| Tth111I | GACNNNGTC | 1 cut(s) | 315 |
| Vha464I | CTTAAG | 1 cut(s) | 551 |
| VpaK11BI | GGWCC | 2 cut(s) | 989, 1627 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1461, 1596 |
| XapI | RAATTY | 8 cut(s) | 260, 418, 626, 1009, 1037, 1254, 1277, 1697 |
| XmiI | GTMKAC | 2 cut(s) | 978, 1357 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1257 |
| XspI | CTAG | 4 cut(s) | 522, 657, 822, 1610 |