Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014367

Physical Location & Seq

Genomic Coordinates Reverse (-)

25413537 .. 25414144

Gene Structure 608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0244500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAACTCATACCTATCTCAGCCAAATCCGGTGACTGCTCAATGGGAAAGTGAAGACCATTTGGGAGATCCTGAGTTCCAGTTGGACGCTTTCAGATACCGAACTTCTCGACTACTTCAAACTGTTGCTGTAAGACCTCGCAAGCACTCTAATACTCTTGGAAGTTTTGGCGCTTGGAATAGATGCTTAAACCACCTTTTGACACTTGCAGAGTCCCATATTGAATCTGTCATCCTTGCCGAGTTTATGAAAGTTGTGCAGAAGTACTTCTTAGTTCCGTTCTCTGTCTCATGCTTTACATTCTTTTTACTTTTCTTTGTGGGACGAGATTTGCTAAACCACCTTTTGACACTTGCAGAGTCCCATATTGAATCTGTCATCCTTGCCAAGTTTATAGAAGTTGTGCAGAAGTACTTCCTAGTTCCAATATCAGTGTATTCTTTTTACTTTTCTTTGTGGGACAAGATTTTAGTAAAGCGTCTTCACATTAAGAAGAATGATTTGAATATTGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004816 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006421 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

172

Amino Acids

20.1

Weight (kDa)

7.83

Isoelectric Point (pI)

56.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACOX	PF01756	23 - 87	1.1e-06	Acyl-CoA oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17300 AT4G17300
fragaria_vesca	FvH4_1g25310
malus_domestica	MD06G1059300.v1.1
prunus_persica	Prupe.5G070100_v2.0.a1 Prupe.5G070100_v2.0.a1
pyrus_communis	pycom06g04930
rosa_chinensis	RchiOBHm_Chr2g0123321
rosa_multiflora	Rmu_sc0001917.1_g000001 Rmu_sc0021262.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120780
rosa_rugosa	Rorug02G0244500
rosa_samantha	Rh2AG303600 Rh2BG311700 Rh2CG290200 Rh2DG327600
rosa_wichuraiana	Rw2G024300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	62
AfaI	GTAC	2 cut(s)	266, 413
AgsI	TTSAA	5 cut(s)	119, 224, 371, 505, 512
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	1 cut(s)	62
Asp700I	GAANNNNTTC	2 cut(s)	266, 413
AspLEI	GCGC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	43
BarI	GAAGNNNNNNTAC	2 cut(s)	465, 497
BbsI	GAAGAC	2 cut(s)	60, 473
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	1 cut(s)	419
BfoI	RGCGCY	1 cut(s)	174
BmcAI	AGTACT	2 cut(s)	266, 413
BmsI	GCATC	1 cut(s)	173
BpiI	GAAGAC	2 cut(s)	60, 473
BsaWI	WCCGGW	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	79
BseGI	GGATG	2 cut(s)	231, 378
BseMII	CTCAG	2 cut(s)	32, 63
BseNI	ACTGG	1 cut(s)	79
BsgI	GTGCAG	2 cut(s)	278, 425
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	4 cut(s)	199, 336, 346, 473
BsmAI	GTCTC	1 cut(s)	292
BsmFI	GGGAC	4 cut(s)	199, 336, 346, 473
Bsp143I	GATC	1 cut(s)	67
BspCNI	CTCAG	2 cut(s)	31, 64
BspPI	GGATC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	79
BssMI	GATC	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	3 cut(s)	18, 72, 271
BstF5I	GGATG	2 cut(s)	231, 378
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	67
BstV2I	GAAGAC	2 cut(s)	60, 473
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	231, 378
BtsIMutI	CAGTG	1 cut(s)	438
Cac8I	GCNNGC	1 cut(s)	143
CfoI	GCGC	1 cut(s)	173
CseI	GACGC	2 cut(s)	95, 467
Csp6I	GTAC	2 cut(s)	265, 412
CviAII	CATG	1 cut(s)	291
CviJI	RGCY	1 cut(s)	22
CviKI_1	RGCY	1 cut(s)	22
CviQI	GTAC	2 cut(s)	265, 412
DdeI	CTNAG	3 cut(s)	18, 72, 271
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
FaeI	CATG	1 cut(s)	294
FaiI	YATR	6 cut(s)	10, 219, 248, 292, 366, 395
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	4 cut(s)	199, 336, 346, 473
FatI	CATG	1 cut(s)	290
FokI	GGATG	2 cut(s)	218, 365
FspBI	CTAG	1 cut(s)	419
GlaI	GCGC	1 cut(s)	172
HaeII	RGCGCY	1 cut(s)	174
HapII	CCGG	1 cut(s)	29
HgaI	GACGC	2 cut(s)	95, 467
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	1 cut(s)	294
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HinfI	GANTC	4 cut(s)	212, 224, 359, 371
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	2 cut(s)	71, 108
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	4 cut(s)	209, 259, 356, 406
HpyF3I	CTNAG	3 cut(s)	18, 72, 271
Hsp92II	CATG	1 cut(s)	294
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	67
LpnPI	CCDG	3 cut(s)	42, 84, 92
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	1 cut(s)	419
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	3 cut(s)	65, 473, 505
MflI	RGATCY	1 cut(s)	67
MluCI	AATT	1 cut(s)	514
MlyI	GAGTC	2 cut(s)	221, 368
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	1 cut(s)	147
MroXI	GAANNNNTTC	2 cut(s)	266, 413
MseI	TTAA	2 cut(s)	188, 489
MspI	CCGG	1 cut(s)	29
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	1 cut(s)	294
NmeAIII	GCCGAG	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	31
PdmI	GAANNNNTTC	2 cut(s)	266, 413
PfeI	GAWTC	2 cut(s)	224, 371
PleI	GAGTC	2 cut(s)	220, 367
PpsI	GAGTC	2 cut(s)	220, 367
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	2 cut(s)	266, 413
RsaNI	GTAC	2 cut(s)	265, 412
SaqAI	TTAA	2 cut(s)	188, 489
Sau3AI	GATC	1 cut(s)	67
ScaI	AGTACT	2 cut(s)	266, 413
SchI	GAGTC	2 cut(s)	221, 368
SetI	ASST	4 cut(s)	15, 139, 198, 345
SfaNI	GCATC	1 cut(s)	173
Sse9I	AATT	1 cut(s)	514
SspI	AATATT	1 cut(s)	508
SspMI	CTAG	1 cut(s)	419
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	1 cut(s)	109
TasI	AATT	1 cut(s)	514
TatI	WGTACW	2 cut(s)	264, 411
TfiI	GAWTC	2 cut(s)	224, 371
Tru1I	TTAA	2 cut(s)	188, 489
Tru9I	TTAA	2 cut(s)	188, 489
TscAI	CASTG	1 cut(s)	438
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	2 cut(s)	17, 263
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	438
XmnI	GAANNNNTTC	2 cut(s)	266, 413
XspI	CTAG	1 cut(s)	419
ZrmI	AGTACT	2 cut(s)	266, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.