Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021262.1

Orthogroup ID

OG0014367

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 6076

Gene Structure 6076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021262.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

gatttctttgggaaaccagcattcttaactgtctctggccaactcaatgctgaaacatatgcaactgctctttctgatgtttatacatttggtcccacatttagggccgaaaattcaaacacatcaaggcaccttgctgaattctggatgattgagcctgagcttgcatttgctgatctgaatgatgacatggcctgtgcaactgcctatctccagtatgtagtgagacatgtcctcgataattgcaaagaagacatggatttttttaatacttggattgagaaaggaatcatcgatcgattgactgatgtagctgagaaagactttgtgcagttgacgtatactgatgcagttgaacttcttcttaaaacaaagaagaaatttgaattcccagtgaagtggggatgtgatttgcagagtgagcatgagcgttatttaactgaagaggcatttagtggatgcccagtaattgtcagggactatccgaaggagataaaagcattctatatgcggcaaaatgatgatggaaagactgtggcagctatggatatgttggttcctcgggttggagagcttatcggtggaagccagagagaagagaggcttgaatatttagaagatcggttggatgaattaaagctgaataaggaggcatactggtggtatcttgatttgcgtcgttatgggtcagttcctcatgcgggctttggtcttggtttcgaaaggcttgtacaatttgccactgggatagagaatatcagagatgtgattcctttccctcggacacctggatcatcagaattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004816 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006421 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

268

Amino Acids

30.96

Weight (kDa)

4.73

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17300 AT4G17300
fragaria_vesca	FvH4_1g25310
malus_domestica	MD06G1059300.v1.1
prunus_persica	Prupe.5G070100_v2.0.a1 Prupe.5G070100_v2.0.a1
pyrus_communis	pycom06g04930
rosa_chinensis	RchiOBHm_Chr2g0123321
rosa_multiflora	Rmu_sc0001917.1_g000001 Rmu_sc0021262.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120780
rosa_rugosa	Rorug02G0244500
rosa_samantha	Rh2AG303600 Rh2BG311700 Rh2CG290200 Rh2DG327600
rosa_wichuraiana	Rw2G024300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	341
AciI	CCGC	2 cut(s)	511, 701
AclWI	GGATC	1 cut(s)	799
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	5 cut(s)	112, 140, 380, 386, 800
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	1 cut(s)	732
AfiI	CCNNNNNNNGG	3 cut(s)	102, 566, 701
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	4 cut(s)	117, 356, 386, 608
AjnI	CCWGG	1 cut(s)	787
AluBI	AGCT	5 cut(s)	163, 314, 542, 574, 640
AluI	AGCT	5 cut(s)	163, 314, 542, 574, 640
Alw26I	GTCTC	2 cut(s)	37, 220
AlwI	GGATC	1 cut(s)	799
Ama87I	CYCGRG	1 cut(s)	561
AoxI	GGCC	3 cut(s)	37, 105, 192
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	5 cut(s)	112, 140, 380, 386, 800
Asp700I	GAANNNNTTC	1 cut(s)	360
AspS9I	GGNCC	2 cut(s)	92, 105
AsuII	TTCGAA	1 cut(s)	720
AvaI	CYCGRG	1 cut(s)	561
AvaII	GGWCC	1 cut(s)	92
BalI	TGGCCA	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	551
BccI	CCATC	1 cut(s)	518
BciT130I	CCWGG	1 cut(s)	789
BcoDI	GTCTC	2 cut(s)	37, 220
BisI	GCNGC	2 cut(s)	512, 540
BlsI	GCNGC	2 cut(s)	513, 541
Bme1390I	CCNGG	1 cut(s)	789
Bme18I	GGWCC	1 cut(s)	92
BmeT110I	CYCGRG	1 cut(s)	561
BmgT120I	GGNCC	2 cut(s)	92, 105
BmiI	GGNNCC	3 cut(s)	94, 131, 558
BmrFI	CCNGG	1 cut(s)	789
BmrI	ACTGGG	3 cut(s)	386, 458, 753
BmsI	GCATC	2 cut(s)	337, 449
BmuI	ACTGGG	3 cut(s)	386, 458, 753
BpiI	GAAGAC	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	197
Bpu10I	CCTNAGC	1 cut(s)	159
Bpu14I	TTCGAA	1 cut(s)	720
Bsa29I	ATCGAT	2 cut(s)	294, 298
BsaJI	CCNNGG	2 cut(s)	560, 779
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 566, 701
Bse1I	ACTGG	5 cut(s)	214, 392, 464, 662, 748
BseBI	CCWGG	1 cut(s)	789
BseCI	ATCGAT	2 cut(s)	294, 298
BseDI	CCNNGG	2 cut(s)	560, 779
BseGI	GGATG	4 cut(s)	153, 410, 464, 634
BseLI	CCNNNNNNNGG	3 cut(s)	102, 566, 701
BseMII	CTCAG	2 cut(s)	150, 306
BseNI	ACTGG	5 cut(s)	214, 392, 464, 662, 748
BseXI	GCAGC	1 cut(s)	551
BsgI	GTGCAG	1 cut(s)	350
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	3 cut(s)	39, 107, 194
BshNI	GGYRCC	1 cut(s)	129
BshVI	ATCGAT	2 cut(s)	294, 298
BsiEI	CGRYCG	1 cut(s)	298
BsiHKCI	CYCGRG	1 cut(s)	561
BslFI	GGGAC	2 cut(s)	78, 491
BslI	CCNNNNNNNGG	3 cut(s)	102, 566, 701
BsmAI	GTCTC	2 cut(s)	37, 220
BsmFI	GGGAC	2 cut(s)	78, 491
BsmI	GAATGC	2 cut(s)	20, 500
BsnI	GGCC	3 cut(s)	39, 107, 194
BsoBI	CYCGRG	1 cut(s)	561
Bsp119I	TTCGAA	1 cut(s)	720
Bsp1407I	TGTACA	1 cut(s)	730
Bsp143I	GATC	4 cut(s)	175, 295, 619, 791
BspACI	CCGC	2 cut(s)	511, 701
BspANI	GGCC	3 cut(s)	39, 107, 194
BspCNI	CTCAG	2 cut(s)	151, 307
BspDI	ATCGAT	2 cut(s)	294, 298
BspLI	GGNNCC	3 cut(s)	94, 131, 558
BspPI	GGATC	1 cut(s)	799
BspT104I	TTCGAA	1 cut(s)	720
BspT107I	GGYRCC	1 cut(s)	129
BsrGI	TGTACA	1 cut(s)	730
BsrI	ACTGG	5 cut(s)	214, 392, 464, 662, 748
BssECI	CCNNGG	2 cut(s)	560, 779
BssMI	GATC	4 cut(s)	175, 295, 619, 791
BssNAI	GTATAC	1 cut(s)	342
Bst1107I	GTATAC	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	789
Bst4CI	ACNGT	2 cut(s)	31, 535
Bst6I	CTCTTC	2 cut(s)	438, 591
BstAUI	TGTACA	1 cut(s)	730
BstBI	TTCGAA	1 cut(s)	720
BstC8I	GCNNGC	2 cut(s)	165, 703
BstDEI	CTNAG	2 cut(s)	159, 315
BstF5I	GGATG	4 cut(s)	153, 410, 464, 634
BstKTI	GATC	4 cut(s)	178, 298, 622, 794
BstMAI	GTCTC	2 cut(s)	37, 220
BstMBI	GATC	4 cut(s)	175, 295, 619, 791
BstMCI	CGRYCG	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	421
BstNI	CCWGG	1 cut(s)	789
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	787
BstV1I	GCAGC	1 cut(s)	551
BstV2I	GAAGAC	1 cut(s)	258
BstXI	CCANNNNNNTGG	1 cut(s)	399
BstZ17I	GTATAC	1 cut(s)	342
Bsu15I	ATCGAT	2 cut(s)	294, 298
BsuRI	GGCC	3 cut(s)	39, 107, 194
BsuTUI	ATCGAT	2 cut(s)	294, 298
BtsCI	GGATG	4 cut(s)	153, 410, 464, 634
BtsIMutI	CAGTG	2 cut(s)	399, 741
Cac8I	GCNNGC	2 cut(s)	165, 703
Cfr13I	GGNCC	2 cut(s)	92, 105
ClaI	ATCGAT	2 cut(s)	294, 298
CseI	GACGC	1 cut(s)	665
Csp6I	GTAC	1 cut(s)	731
CviAII	CATG	5 cut(s)	190, 230, 256, 425, 698
CviQI	GTAC	1 cut(s)	731
DdeI	CTNAG	2 cut(s)	159, 315
DpnI	GATC	4 cut(s)	177, 297, 621, 793
DpnII	GATC	4 cut(s)	175, 295, 619, 791
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	2 cut(s)	438, 591
EarI	CTCTTC	2 cut(s)	438, 591
Eco47I	GGWCC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	561
EcoRI	GAATTC	2 cut(s)	140, 386
EcoRII	CCWGG	1 cut(s)	787
FaeI	CATG	5 cut(s)	193, 233, 259, 428, 701
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FaqI	GGGAC	2 cut(s)	78, 491
FatI	CATG	5 cut(s)	189, 229, 255, 424, 697
FauI	CCCGC	1 cut(s)	694
FauNDI	CATATG	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	341
Fnu4HI	GCNGC	2 cut(s)	512, 540
FokI	GGATG	4 cut(s)	160, 417, 471, 641
Fsp4HI	GCNGC	2 cut(s)	512, 540
GluI	GCNGC	2 cut(s)	512, 540
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	3 cut(s)	39, 107, 194
HgaI	GACGC	1 cut(s)	665
Hin1II	CATG	5 cut(s)	193, 233, 259, 428, 701
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HinfI	GANTC	2 cut(s)	288, 769
Hpy166II	GTNNAC	2 cut(s)	336, 342
Hpy188I	TCNGA	6 cut(s)	76, 180, 486, 761, 783, 799
Hpy188III	TCNNGA	2 cut(s)	145, 668
Hpy8I	GTNNAC	2 cut(s)	336, 342
Hpy99I	CGWCG	1 cut(s)	681
HpyAV	CCTTC	1 cut(s)	481
HpyCH4III	ACNGT	2 cut(s)	31, 535
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	7 cut(s)	62, 167, 200, 246, 331, 350, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	421
HpyF3I	CTNAG	2 cut(s)	159, 315
HpySE526I	ACGT	1 cut(s)	338
Hsp92II	CATG	5 cut(s)	193, 233, 259, 428, 701
Kzo9I	GATC	4 cut(s)	175, 295, 619, 791
Lsp1109I	GCAGC	1 cut(s)	551
LweI	GCATC	2 cut(s)	337, 449
MaeII	ACGT	1 cut(s)	338
MalI	GATC	4 cut(s)	177, 297, 621, 793
MboI	GATC	4 cut(s)	175, 295, 619, 791
MboII	GAAGA	6 cut(s)	263, 353, 388, 455, 608, 629
MlsI	TGGCCA	1 cut(s)	39
MluCI	AATT	9 cut(s)	112, 140, 241, 380, 386, 468, 632, 734, 800
MluNI	TGGCCA	1 cut(s)	39
MmeI	TCCRAC	2 cut(s)	547, 606
MnlI	CCTC	7 cut(s)	245, 439, 570, 594, 643, 705, 789
Mox20I	TGGCCA	1 cut(s)	39
MroXI	GAANNNNTTC	1 cut(s)	360
MscI	TGGCCA	1 cut(s)	39
MseI	TTAA	6 cut(s)	26, 267, 366, 437, 635, 805
MslI	CAYNNNNRTG	1 cut(s)	658
Msp20I	TGGCCA	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	789
Mva1269I	GAATGC	2 cut(s)	20, 500
MvaI	CCWGG	1 cut(s)	789
MwoI	GCNNNNNNNGC	1 cut(s)	421
NdeI	CATATG	1 cut(s)	58
NdeII	GATC	4 cut(s)	175, 295, 619, 791
NlaIII	CATG	5 cut(s)	193, 233, 259, 428, 701
NlaIV	GGNNCC	3 cut(s)	94, 131, 558
NspI	RCATGY	1 cut(s)	233
NspV	TTCGAA	1 cut(s)	720
PciI	ACATGT	1 cut(s)	229
PctI	GAATGC	2 cut(s)	20, 500
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	288, 769
PkrI	GCNGC	2 cut(s)	513, 541
Ple19I	CGATCG	1 cut(s)	298
PscI	ACATGT	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	787
PspGI	CCWGG	1 cut(s)	787
PspN4I	GGNNCC	3 cut(s)	94, 131, 558
PspPI	GGNCC	2 cut(s)	92, 105
PvuI	CGATCG	1 cut(s)	298
RsaI	GTAC	1 cut(s)	732
RsaNI	GTAC	1 cut(s)	731
RseI	CAYNNNNRTG	1 cut(s)	658
SaqAI	TTAA	6 cut(s)	26, 267, 366, 437, 635, 805
SatI	GCNGC	2 cut(s)	512, 540
Sau3AI	GATC	4 cut(s)	175, 295, 619, 791
Sau96I	GGNCC	2 cut(s)	92, 105
ScrFI	CCNGG	1 cut(s)	789
SetI	ASST	8 cut(s)	135, 165, 316, 341, 544, 576, 642, 790
SfaNI	GCATC	2 cut(s)	337, 449
SfuI	TTCGAA	1 cut(s)	720
SinI	GGWCC	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	658
Sse9I	AATT	9 cut(s)	112, 140, 241, 380, 386, 468, 632, 734, 800
SsiI	CCGC	2 cut(s)	511, 701
SspI	AATATT	1 cut(s)	611
StyD4I	CCNGG	1 cut(s)	787
TaaI	ACNGT	2 cut(s)	31, 535
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	4 cut(s)	237, 294, 298, 720
TasI	AATT	9 cut(s)	112, 140, 241, 380, 386, 468, 632, 734, 800
TatI	WGTACW	1 cut(s)	730
TauI	GCSGC	1 cut(s)	514
TfiI	GAWTC	2 cut(s)	288, 769
Tru1I	TTAA	6 cut(s)	26, 267, 366, 437, 635, 805
Tru9I	TTAA	6 cut(s)	26, 267, 366, 437, 635, 805
TscAI	CASTG	2 cut(s)	399, 748
TseI	GCWGC	1 cut(s)	539
TspDTI	ATGAA	1 cut(s)	645
TspRI	CASTG	2 cut(s)	399, 748
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	5 cut(s)	112, 140, 380, 386, 800
XceI	RCATGY	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.