Rh2DG327600

asparagine--tRNA ligase, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
41387864 .. 41395341
7478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG327600.1

Sequence Viewer

Length: 1386 bp
ATGGCCGCCGCCGCCGCCTTTGCGCCACCCTCTTATTCTCTCCGCCTCCGCTTCCTCTCCTTCTACCCCATCAGACCAATTCTCCCCCACTCCAAACCTCCTGTTTTCCCGCCATTTCTTCTCCGGCCCTTCCCGCCCTCCGCCCCTCCGCGCCGCTCCTTCTGCACCGTCGTCGCCGCAGCTCTCCACTCCGGCGGCGCCGCCGAGAGGACCAAGCCCGAAATCTCGGAAAAGTGGAGGGACAGAGTTGGCGAGTTCAGGAAGAAGCTCAAGGTCGCTGATATCAAGGGCGGCCCTGATGAAGGGCTCGACCGGCTGGGTCAGACTCTGGTGGTCACCGGCTGGGTTCGGACTCTTCGCGTCCAAAGCAGTGTCACCTTCATCGAGGTTAACGATGGGTCATGCCTCTCGAATATGCAATGTGTAATGGGTTCAGATGCTGAAGGCTATGATCAGGTAGAATCTGGCTCAATCACAACTGGTGCTTCGGTATGGGTGCAAGGCGTTGTAGCTACTAGCCAAGGATCAAAACAAAAAGTGGAATTGAAGGTCAAGAAAATTGTTATGATTGGAAGGAGTGATCCTTCTTATCCTATCCAAAAGAAAAGGGTCAGCAGAGAATTTCTGAGAACGAAAGCTCATCTTCGGCCAAGAACAAATACTTTTGGTGCGGTTGCAAGAGTGAGAAATGCTTTGGCTTATGCTACTCACAACTTTTTCCAAGAAAATGGATTTGTGTGGGTCTCAAGTCCCATTATTACTGGTTCAGATTGTGAAGGAGCAGGTGAACAATTCTGTGTAACTACTCTGATTCCAAGCTCCAATGAAGTCTCTGATTCTCCTATTGATGGTATACCAAAAAAGGAGGATGGCCGAGTTGATTGGTCACAAGATTTCTTTGGGAAACCAGCATTCTTAACTGTCTCTGGCCAACTCAATGCTGAAACATATGCAACTGCTCTTTCTGATGTTTATACATTTGGTCCCACATTTAGGGCCGAAAATTCAAACACATCAAGGCACCTTGCTGAATTCTGGATGATTGAGCCTGAGCTTGCATTTGCTGATCTGAATGATGACATGGCCTGTGCAACTGCCTATCTCCAGTATGTAGTGAGACATGTCCTCGATAATTGCAAAGAAGACATGGATTTTTTTAATACTTGGATTGAGAAAGGAATCATCGATCGATTGACTGATGTAGCTGAGAAAGACTTTGTGCAGTTGACGTATACTGATGCAGTTGAACTTCTTCTTAAAACAAAGAAGAAATTTGAATTCCCAGTGAAGTGGGGATGTGATTTGCAGAGTGAGCATGAGCGTTATTTAACTGAAGAGGCATTTAGTGGATGCCCAGTAATTGTCAGGGACTATCCGAAGGCATGA

Protein Analysis

461

Amino Acids

51.39

Weight (kDa)

6.68

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_anti-codon PF01336 111 - 188 2.7e-08 OB-fold nucleic acid binding domain
tRNA-synt_2 PF00152 207 - 460 1.7e-27 tRNA synthetases class II (D, K and N)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014367)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 773
Acc36I ACCTGC 1 cut(s) 773
AccB1I GGYRCC 2 cut(s) 197, 1020
AccBSI CCGCTC 1 cut(s) 156
AccI GTMKAC 2 cut(s) 853, 1232
AccII CGCG 2 cut(s) 151, 360
AclWI GGATC 2 cut(s) 532, 575
AcoI YGGCCR 4 cut(s) 3, 647, 871, 928
AcsI RAATTY 5 cut(s) 620, 1003, 1031, 1271, 1277
AcuI CTGAAG 2 cut(s) 462, 1353
AcyI GRCGYC 1 cut(s) 198
AfiI CCNNNNNNNGG 4 cut(s) 207, 302, 848, 993
AflIII ACRYGT 1 cut(s) 1120
AgsI TTSAA 4 cut(s) 547, 1008, 1247, 1277
AluBI AGCT 7 cut(s) 182, 268, 512, 638, 819, 1054, 1205
AluI AGCT 7 cut(s) 182, 268, 512, 638, 819, 1054, 1205
Alw26I GTCTC 4 cut(s) 748, 835, 928, 1111
AlwI GGATC 2 cut(s) 532, 575
AlwNI CAGNNNCTG 2 cut(s) 328, 440
AoxI GGCC 8 cut(s) 3, 125, 292, 647, 871, 928, 996, 1083
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 5 cut(s) 620, 1003, 1031, 1271, 1277
Asp700I GAANNNNTTC 1 cut(s) 1251
AspLEI GCGC 3 cut(s) 25, 153, 200
AspS9I GGNCC 5 cut(s) 126, 210, 293, 983, 996
AsuHPI GGTGA 3 cut(s) 328, 367, 797
AvaII GGWCC 2 cut(s) 210, 983
BalI TGGCCA 1 cut(s) 930
BanI GGYRCC 2 cut(s) 197, 1020
BanII GRGCYC 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 1149
BbvI GCAGC 1 cut(s) 191
BccI CCATC 4 cut(s) 77, 389, 842, 863
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BclI TGATCA 1 cut(s) 451
BcoDI GTCTC 4 cut(s) 748, 835, 928, 1111
BfaI CTAG 1 cut(s) 516
BfoI RGCGCY 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 773
Bme18I GGWCC 2 cut(s) 210, 983
BmgT120I GGNCC 5 cut(s) 126, 210, 293, 983, 996
BmiI GGNNCC 3 cut(s) 199, 985, 1022
BmrI ACTGGG 2 cut(s) 1277, 1349
BmsI GCATC 3 cut(s) 427, 1228, 1340
BmuI ACTGGG 2 cut(s) 1277, 1349
BpiI GAAGAC 1 cut(s) 1149
BpmI CTGGAG 1 cut(s) 1088
Bpu10I CCTNAGC 1 cut(s) 1050
BpuEI CTTGAG 2 cut(s) 254, 730
Bsa29I ATCGAT 2 cut(s) 1185, 1189
BsaHI GRCGYC 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 748
BsaJI CCNNGG 1 cut(s) 520
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 4 cut(s) 207, 302, 848, 993
Bse118I RCCGGY 2 cut(s) 312, 338
Bse1I ACTGG 5 cut(s) 484, 766, 1105, 1283, 1355
Bse3DI GCAATG 1 cut(s) 425
BseCI ATCGAT 2 cut(s) 1185, 1189
BseDI CCNNGG 1 cut(s) 520
BseGI GGATG 4 cut(s) 874, 1044, 1301, 1355
BseLI CCNNNNNNNGG 4 cut(s) 207, 302, 848, 993
BseMI GCAATG 1 cut(s) 425
BseMII CTCAG 3 cut(s) 617, 1041, 1197
BseNI ACTGG 5 cut(s) 484, 766, 1105, 1283, 1355
BseXI GCAGC 1 cut(s) 191
BseYI CCCAGC 2 cut(s) 316, 342
BsgI GTGCAG 2 cut(s) 148, 1241
Bsh1236I CGCG 2 cut(s) 151, 360
Bsh1285I CGRYCG 2 cut(s) 313, 1189
BshFI GGCC 8 cut(s) 5, 127, 294, 649, 873, 930, 998, 1085
BshNI GGYRCC 2 cut(s) 197, 1020
BshVI ATCGAT 2 cut(s) 1185, 1189
BsiEI CGRYCG 2 cut(s) 313, 1189
BsiSI CCGG 4 cut(s) 124, 192, 313, 339
BslFI GGGAC 4 cut(s) 254, 735, 969, 1382
BslI CCNNNNNNNGG 4 cut(s) 207, 302, 848, 993
BsmAI GTCTC 4 cut(s) 748, 835, 928, 1111
BsmFI GGGAC 4 cut(s) 254, 735, 969, 1382
BsmI GAATGC 1 cut(s) 911
BsnI GGCC 8 cut(s) 5, 127, 294, 649, 873, 930, 998, 1085
Bso31I GGTCTC 1 cut(s) 748
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 5 cut(s) 451, 524, 580, 1066, 1186
BspANI GGCC 8 cut(s) 5, 127, 294, 649, 873, 930, 998, 1085
BspCNI CTCAG 3 cut(s) 618, 1042, 1198
BspDI ATCGAT 2 cut(s) 1185, 1189
BspFNI CGCG 2 cut(s) 151, 360
BspLI GGNNCC 3 cut(s) 199, 985, 1022
BspMI ACCTGC 1 cut(s) 773
BspPI GGATC 2 cut(s) 532, 575
BspT107I GGYRCC 2 cut(s) 197, 1020
BspTNI GGTCTC 1 cut(s) 748
BsrBI CCGCTC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 425
BsrFI RCCGGY 2 cut(s) 312, 338
BsrI ACTGG 5 cut(s) 484, 766, 1105, 1283, 1355
BssAI RCCGGY 2 cut(s) 312, 338
BssECI CCNNGG 1 cut(s) 520
BssMI GATC 5 cut(s) 451, 524, 580, 1066, 1186
BssNAI GTATAC 2 cut(s) 854, 1233
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 520
Bst1107I GTATAC 2 cut(s) 854, 1233
Bst4CI ACNGT 2 cut(s) 169, 922
Bst6I CTCTTC 2 cut(s) 360, 1329
BstACI GRCGYC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 1056
BstDEI CTNAG 3 cut(s) 626, 1050, 1206
BstEII GGTNACC 1 cut(s) 334
BstENI CCTNNNNNAGG 1 cut(s) 300
BstF5I GGATG 4 cut(s) 874, 1044, 1301, 1355
BstFNI CGCG 2 cut(s) 151, 360
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 3 cut(s) 25, 153, 200
BstKTI GATC 5 cut(s) 454, 527, 583, 1069, 1189
BstMAI GTCTC 4 cut(s) 748, 835, 928, 1111
BstMBI GATC 5 cut(s) 451, 524, 580, 1066, 1186
BstMCI CGRYCG 2 cut(s) 313, 1189
BstMWI GCNNNNNNNGC 8 cut(s) 11, 14, 20, 133, 162, 313, 366, 1312
BstNSI RCATGY 1 cut(s) 1124
BstPI GGTNACC 1 cut(s) 334
BstUI CGCG 2 cut(s) 151, 360
BstV1I GCAGC 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 1149
BstXI CCANNNNNNTGG 2 cut(s) 728, 1290
BstZ17I GTATAC 2 cut(s) 854, 1233
Bsu15I ATCGAT 2 cut(s) 1185, 1189
BsuRI GGCC 8 cut(s) 5, 127, 294, 649, 873, 930, 998, 1085
BsuTUI ATCGAT 2 cut(s) 1185, 1189
BtsCI GGATG 4 cut(s) 874, 1044, 1301, 1355
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 2 cut(s) 376, 1290
BveI ACCTGC 1 cut(s) 773
Cac8I GCNNGC 1 cut(s) 1056
CaiI CAGNNNCTG 2 cut(s) 328, 440
CfoI GCGC 3 cut(s) 25, 153, 200
Cfr10I RCCGGY 2 cut(s) 312, 338
Cfr13I GGNCC 5 cut(s) 126, 210, 293, 983, 996
ClaI ATCGAT 2 cut(s) 1185, 1189
CseI GACGC 1 cut(s) 349
CviAII CATG 6 cut(s) 402, 1081, 1121, 1147, 1316, 1383
DdeI CTNAG 3 cut(s) 626, 1050, 1206
DinI GGCGCC 1 cut(s) 199
DpnI GATC 5 cut(s) 453, 526, 582, 1068, 1188
DpnII GATC 5 cut(s) 451, 524, 580, 1066, 1186
EaeI YGGCCR 4 cut(s) 3, 647, 871, 928
Eam1104I CTCTTC 2 cut(s) 360, 1329
EarI CTCTTC 2 cut(s) 360, 1329
EciI GGCGGA 2 cut(s) 32, 130
Eco130I CCWWGG 1 cut(s) 520
Eco24I GRGCYC 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 748
Eco32I GATATC 1 cut(s) 283
Eco47I GGWCC 2 cut(s) 210, 983
Eco57I CTGAAG 2 cut(s) 462, 1353
Eco91I GGTNACC 1 cut(s) 334
EcoNI CCTNNNNNAGG 1 cut(s) 300
EcoO65I GGTNACC 1 cut(s) 334
EcoRI GAATTC 2 cut(s) 1031, 1277
EcoRV GATATC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 520
EcoT38I GRGCYC 1 cut(s) 309
EgeI GGCGCC 1 cut(s) 199
EheI GGCGCC 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 520
FaeI CATG 6 cut(s) 405, 1084, 1124, 1150, 1319, 1386
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FaqI GGGAC 4 cut(s) 254, 735, 969, 1382
FatI CATG 6 cut(s) 401, 1080, 1120, 1146, 1315, 1382
FauI CCCGC 2 cut(s) 117, 141
FauNDI CATATG 1 cut(s) 949
FbaI TGATCA 1 cut(s) 451
FblI GTMKAC 2 cut(s) 853, 1232
FokI GGATG 4 cut(s) 881, 1051, 1308, 1362
FriOI GRGCYC 1 cut(s) 309
FspBI CTAG 1 cut(s) 516
GlaI GCGC 3 cut(s) 24, 152, 199
GsaI CCCAGC 2 cut(s) 320, 346
GsuI CTGGAG 1 cut(s) 1088
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 8 cut(s) 5, 127, 294, 649, 873, 930, 998, 1085
HapII CCGG 4 cut(s) 124, 192, 313, 339
HgaI GACGC 1 cut(s) 349
HhaI GCGC 3 cut(s) 25, 153, 200
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 6 cut(s) 405, 1084, 1124, 1150, 1319, 1386
Hin6I GCGC 3 cut(s) 23, 151, 198
HinP1I GCGC 3 cut(s) 23, 151, 198
HincII GTYRAC 2 cut(s) 391, 1227
HindII GTYRAC 2 cut(s) 391, 1227
HinfI GANTC 6 cut(s) 325, 352, 461, 811, 836, 1179
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 4 cut(s) 124, 192, 313, 339
HphI GGTGA 3 cut(s) 328, 367, 797
Hpy166II GTNNAC 5 cut(s) 391, 788, 854, 1227, 1233
Hpy188III TCNNGA 4 cut(s) 259, 409, 553, 1036
Hpy8I GTNNAC 5 cut(s) 391, 788, 854, 1227, 1233
Hpy99I CGWCG 2 cut(s) 173, 176
HpyCH4III ACNGT 2 cut(s) 169, 922
HpyCH4IV ACGT 1 cut(s) 1229
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 14, 20, 133, 162, 313, 366, 1312
HpyF3I CTNAG 3 cut(s) 626, 1050, 1206
HpySE526I ACGT 1 cut(s) 1229
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 6 cut(s) 405, 1084, 1124, 1150, 1319, 1386
HspAI GCGC 3 cut(s) 23, 151, 198
KasI GGCGCC 1 cut(s) 197
Ksp22I TGATCA 1 cut(s) 451
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 5 cut(s) 451, 524, 580, 1066, 1186
LmnI GCTCC 3 cut(s) 161, 779, 824
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 3 cut(s) 427, 1228, 1340
MaeI CTAG 1 cut(s) 516
MaeII ACGT 1 cut(s) 1229
MaeIII GTNAC 4 cut(s) 334, 373, 799, 885
MalI GATC 5 cut(s) 453, 526, 582, 1068, 1188
MbiI CCGCTC 1 cut(s) 156
MboI GATC 5 cut(s) 451, 524, 580, 1066, 1186
MboII GAAGA 8 cut(s) 110, 274, 347, 635, 1154, 1244, 1279, 1346
MhlI GDGCHC 1 cut(s) 309
MlsI TGGCCA 1 cut(s) 930
MluNI TGGCCA 1 cut(s) 930
Mly113I GGCGCC 1 cut(s) 198
MlyI GAGTC 2 cut(s) 319, 346
Mox20I TGGCCA 1 cut(s) 930
MroXI GAANNNNTTC 1 cut(s) 1251
MscI TGGCCA 1 cut(s) 930
MseI TTAA 5 cut(s) 390, 917, 1158, 1257, 1328
Msp20I TGGCCA 1 cut(s) 930
MspI CCGG 4 cut(s) 124, 192, 313, 339
Mva1269I GAATGC 1 cut(s) 911
MvnI CGCG 2 cut(s) 151, 360
MwoI GCNNNNNNNGC 8 cut(s) 11, 14, 20, 133, 162, 313, 366, 1312
NarI GGCGCC 1 cut(s) 198
NdeI CATATG 1 cut(s) 949
NdeII GATC 5 cut(s) 451, 524, 580, 1066, 1186
NlaIII CATG 6 cut(s) 405, 1084, 1124, 1150, 1319, 1386
NlaIV GGNNCC 3 cut(s) 199, 985, 1022
NmeAIII GCCGAG 2 cut(s) 229, 899
NmuCI GTSAC 3 cut(s) 334, 373, 885
NspI RCATGY 1 cut(s) 1124
PaqCI CACCTGC 1 cut(s) 773
PciI ACATGT 1 cut(s) 1120
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PctI GAATGC 1 cut(s) 911
PdmI GAANNNNTTC 1 cut(s) 1251
PfeI GAWTC 4 cut(s) 461, 811, 836, 1179
Ple19I CGATCG 1 cut(s) 1189
PleI GAGTC 2 cut(s) 319, 346
PluTI GGCGCC 1 cut(s) 201
PpsI GAGTC 2 cut(s) 319, 346
PscI ACATGT 1 cut(s) 1120
PspEI GGTNACC 1 cut(s) 334
PspFI CCCAGC 2 cut(s) 316, 342
PspN4I GGNNCC 3 cut(s) 199, 985, 1022
PspPI GGNCC 5 cut(s) 126, 210, 293, 983, 996
PstNI CAGNNNCTG 2 cut(s) 328, 440
PvuI CGATCG 1 cut(s) 1189
SaqAI TTAA 5 cut(s) 390, 917, 1158, 1257, 1328
Sau3AI GATC 5 cut(s) 451, 524, 580, 1066, 1186
Sau96I GGNCC 5 cut(s) 126, 210, 293, 983, 996
SchI GAGTC 2 cut(s) 319, 346
SduI GDGCHC 1 cut(s) 309
SfaNI GCATC 3 cut(s) 427, 1228, 1340
SfoI GGCGCC 1 cut(s) 199
SinI GGWCC 2 cut(s) 210, 983
SmlI CTYRAG 2 cut(s) 269, 745
SmoI CTYRAG 2 cut(s) 269, 745
SspDI GGCGCC 1 cut(s) 197
SspMI CTAG 1 cut(s) 516
StyI CCWWGG 1 cut(s) 520
TaaI ACNGT 2 cut(s) 169, 922
TaiI ACGT 1 cut(s) 1232
TaqI TCGA 6 cut(s) 309, 384, 410, 1128, 1185, 1189
TauI GCSGC 9 cut(s) 8, 11, 14, 17, 156, 179, 198, 203, 294
TfiI GAWTC 4 cut(s) 461, 811, 836, 1179
Tru1I TTAA 5 cut(s) 390, 917, 1158, 1257, 1328
Tru9I TTAA 5 cut(s) 390, 917, 1158, 1257, 1328
TscAI CASTG 2 cut(s) 376, 1290
TseFI GTSAC 3 cut(s) 334, 373, 885
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 3 cut(s) 334, 373, 885
TspDTI ATGAA 3 cut(s) 315, 370, 840
TspRI CASTG 2 cut(s) 376, 1290
VpaK11BI GGWCC 2 cut(s) 210, 983
XagI CCTNNNNNAGG 1 cut(s) 300
XapI RAATTY 5 cut(s) 620, 1003, 1031, 1271, 1277
XceI RCATGY 1 cut(s) 1124
XmiI GTMKAC 2 cut(s) 853, 1232
XmnI GAANNNNTTC 1 cut(s) 1251
XspI CTAG 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.