Rmu_sc0001917.1_g000001

asparagine--tRNA ligase, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001917.1
Physical Location & Seq
Reverse (-)
206 .. 7436
7231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001917.1_g000001.1.cds

Sequence Viewer

Length: 1629 bp
atggccgccttcgcctttgcgccaccctcttcttctctccgcctccgcttcctctccttctaccccatcagaccaattctcccccactccaaacctcctattttcccgccatttcttccccggcccttcccgccctccgcccctccgcgccgctccttctgcaccgtcgtcgccgcagctctccactccggcggcgccgccgagaggaccaagccgaaaatctcggaaaagtggagggacagagttggcgagttcaggaagaagctcaaggtcgctgatatcaagggcggccctgatgaagggctcgaccggctgggccacactctggtggtcaccggctgggttcggactcttcgcgtccaaagcagtgtcaccttcatcgaggttaacgatgggtcatgcctctcgaatatgcaatgtgtaatgggttcagatgctgaaggctatgatcaggtagaatctggctcaatcacaactggtgcttcggtatgggtgcaaggcgttgtagctactagccaaggatcaaaacaaaaagtggaattgaaggtcaagaaaattgttatgattggaaagagtgatccttcttatcctatccaaaagaaaagggtcagcagagaatttctgagaacgaaagctcatcttcggccaagaacaaatacttttggtgcggttgcaagagtgagaaatgctttggcttatgctactcacaactttttccaagaaaatggatttgtgtgggtctcaagtcccattattactggttcagattgtgaaggagcaggtgaacaattctgtgtaactactctgattccaagctccaatgaagtctctgattctcctatcaatggtataccacaaaaggaggatggccgagttgattggtcacaagatttctttgggaaaccagcattcttaactgtctctggccaactcaatgctgaaacatatgcaactgctctttctgacgtttatacatttggtcccacatttagggccgaaaattcaaacacatcaaggcaccttgctgaattctggatgattgagcctgagcttgcatttgctgatctgaatgatgacatggcctgtgcaactgcctatctccagtatgtagtgaagtggggatgtgatttgcagagtgagcatgagcgttatttaactgaagaggcatttagtggatgcccagtaattgtcagggactatccgaaggagataaaagcattctatatgcggcaaaatgatgatggaaagactgtggcagctatggatatgttggttcctcgggttggagagcttatcggtggaagccagagagaagagaggcttgaatatttagaagatcggttggatgaattaaagctgaataaggaggcatactggtggtatctggatttgcgtcgttatgggtcagatagctgggatttcaaagagcagggcttgtccgagacttttatgaccaaggagggcctggagttgattgctgcatcaaagcgagctgagctggagaagaaatggaacaagctgcatgttgctgaattggagtattctgagcttatgagagagagggctgagcttagaaaatttcaggccaagttgatcttggaggcccttaataagtcaacataccattag

Protein Analysis

542

Amino Acids

61.1

Weight (kDa)

7.11

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014367)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 770
Acc36I ACCTGC 1 cut(s) 770
AccB1I GGYRCC 2 cut(s) 194, 1017
AccB7I CCANNNNNTGG 1 cut(s) 325
AccBSI CCGCTC 1 cut(s) 153
AccI GTMKAC 1 cut(s) 850
AccII CGCG 2 cut(s) 148, 357
AclWI GGATC 2 cut(s) 529, 572
AcoI YGGCCR 4 cut(s) 3, 644, 868, 925
AcsI RAATTY 4 cut(s) 617, 1000, 1028, 1577
AcuI CTGAAG 2 cut(s) 459, 1179
AcyI GRCGYC 1 cut(s) 195
AfiI CCNNNNNNNGG 6 cut(s) 204, 299, 325, 845, 990, 1283
AgsI TTSAA 4 cut(s) 544, 1005, 1325, 1423
AjnI CCWGG 1 cut(s) 1464
AleI CACNNNNGTG 1 cut(s) 326
Alw26I GTCTC 4 cut(s) 745, 832, 925, 1436
AlwI GGATC 2 cut(s) 529, 572
AlwNI CAGNNNCTG 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 1278
ApeKI GCWGC 4 cut(s) 176, 1256, 1478, 1519
ApoI RAATTY 4 cut(s) 617, 1000, 1028, 1577
AspLEI GCGC 3 cut(s) 22, 150, 197
AspS9I GGNCC 8 cut(s) 123, 207, 290, 316, 980, 993, 1462, 1603
AsuC2I CCSGG 1 cut(s) 121
AsuHPI GGTGA 3 cut(s) 325, 364, 794
AvaI CYCGRG 1 cut(s) 1278
AvaII GGWCC 2 cut(s) 207, 980
BalI TGGCCA 1 cut(s) 927
BanI GGYRCC 2 cut(s) 194, 1017
BanII GRGCYC 1 cut(s) 306
BbvI GCAGC 4 cut(s) 188, 1268, 1465, 1506
BccI CCATC 4 cut(s) 74, 386, 860, 1235
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 1 cut(s) 1466
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 4 cut(s) 745, 832, 925, 1436
BfaI CTAG 1 cut(s) 513
BfoI RGCGCY 1 cut(s) 198
BfuAI ACCTGC 1 cut(s) 770
BlpI GCTNAGC 2 cut(s) 1494, 1566
Bme1390I CCNGG 2 cut(s) 121, 1466
Bme18I GGWCC 2 cut(s) 207, 980
BmeT110I CYCGRG 1 cut(s) 1278
BmgT120I GGNCC 8 cut(s) 123, 207, 290, 316, 980, 993, 1462, 1603
BmiI GGNNCC 4 cut(s) 196, 982, 1019, 1275
BmrFI CCNGG 2 cut(s) 121, 1466
BmrI ACTGGG 1 cut(s) 1175
BmsI GCATC 3 cut(s) 424, 1166, 1490
BmuI ACTGGG 1 cut(s) 1175
BpmI CTGGAG 3 cut(s) 1085, 1487, 1520
Bpu10I CCTNAGC 1 cut(s) 1047
Bpu1102I GCTNAGC 2 cut(s) 1494, 1566
BpuEI CTTGAG 2 cut(s) 251, 727
BpuMI CCSGG 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 745
BsaJI CCNNGG 4 cut(s) 119, 517, 1277, 1455
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 6 cut(s) 204, 299, 325, 845, 990, 1283
Bse118I RCCGGY 2 cut(s) 309, 335
Bse1I ACTGG 5 cut(s) 481, 763, 1102, 1181, 1379
Bse3DI GCAATG 1 cut(s) 422
BseBI CCWGG 1 cut(s) 1466
BseDI CCNNGG 4 cut(s) 119, 517, 1277, 1455
BseGI GGATG 5 cut(s) 871, 1041, 1127, 1181, 1351
BseLI CCNNNNNNNGG 6 cut(s) 204, 299, 325, 845, 990, 1283
BseMI GCAATG 1 cut(s) 422
BseMII CTCAG 5 cut(s) 614, 1038, 1485, 1536, 1557
BseNI ACTGG 5 cut(s) 481, 763, 1102, 1181, 1379
BseXI GCAGC 4 cut(s) 188, 1268, 1465, 1506
BseYI CCCAGC 3 cut(s) 313, 339, 1413
BsgI GTGCAG 1 cut(s) 145
Bsh1236I CGCG 2 cut(s) 148, 357
Bsh1285I CGRYCG 1 cut(s) 310
BshNI GGYRCC 2 cut(s) 194, 1017
BsiEI CGRYCG 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 1278
BsiSI CCGG 4 cut(s) 121, 189, 310, 336
BslFI GGGAC 4 cut(s) 251, 732, 966, 1208
BslI CCNNNNNNNGG 6 cut(s) 204, 299, 325, 845, 990, 1283
BsmAI GTCTC 4 cut(s) 745, 832, 925, 1436
BsmFI GGGAC 4 cut(s) 251, 732, 966, 1208
BsmI GAATGC 2 cut(s) 908, 1217
Bso31I GGTCTC 1 cut(s) 745
BsoBI CYCGRG 1 cut(s) 1278
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 6 cut(s) 448, 521, 577, 1063, 1336, 1593
Bsp1720I GCTNAGC 2 cut(s) 1494, 1566
BspCNI CTCAG 5 cut(s) 615, 1039, 1486, 1537, 1558
BspFNI CGCG 2 cut(s) 148, 357
BspLI GGNNCC 4 cut(s) 196, 982, 1019, 1275
BspMI ACCTGC 1 cut(s) 770
BspPI GGATC 2 cut(s) 529, 572
BspT107I GGYRCC 2 cut(s) 194, 1017
BspTNI GGTCTC 1 cut(s) 745
BsrBI CCGCTC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 422
BsrFI RCCGGY 2 cut(s) 309, 335
BsrI ACTGG 5 cut(s) 481, 763, 1102, 1181, 1379
BssAI RCCGGY 2 cut(s) 309, 335
BssECI CCNNGG 4 cut(s) 119, 517, 1277, 1455
BssMI GATC 6 cut(s) 448, 521, 577, 1063, 1336, 1593
BssNAI GTATAC 1 cut(s) 851
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 2 cut(s) 517, 1455
Bst1107I GTATAC 1 cut(s) 851
Bst2UI CCWGG 1 cut(s) 1466
Bst4CI ACNGT 3 cut(s) 166, 919, 1252
Bst6I CTCTTC 4 cut(s) 34, 357, 1155, 1308
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 2 cut(s) 1053, 1491
BstDEI CTNAG 6 cut(s) 623, 1047, 1494, 1545, 1566, 1571
BstEII GGTNACC 1 cut(s) 331
BstENI CCTNNNNNAGG 1 cut(s) 297
BstF5I GGATG 5 cut(s) 871, 1041, 1127, 1181, 1351
BstFNI CGCG 2 cut(s) 148, 357
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 3 cut(s) 22, 150, 197
BstKTI GATC 6 cut(s) 451, 524, 580, 1066, 1339, 1596
BstMAI GTCTC 4 cut(s) 745, 832, 925, 1436
BstMBI GATC 6 cut(s) 448, 521, 577, 1063, 1336, 1593
BstMCI CGRYCG 1 cut(s) 310
BstMWI GCNNNNNNNGC 7 cut(s) 11, 130, 159, 310, 363, 1138, 1495
BstNI CCWGG 1 cut(s) 1466
BstNSI RCATGY 1 cut(s) 1526
BstPI GGTNACC 1 cut(s) 331
BstSCI CCNGG 2 cut(s) 119, 1464
BstUI CGCG 2 cut(s) 148, 357
BstV1I GCAGC 4 cut(s) 188, 1268, 1465, 1506
BstXI CCANNNNNNTGG 1 cut(s) 725
BstZ17I GTATAC 1 cut(s) 851
BtsCI GGATG 5 cut(s) 871, 1041, 1127, 1181, 1351
BtsI GCAGTG 1 cut(s) 373
BtsIMutI CAGTG 1 cut(s) 373
BveI ACCTGC 1 cut(s) 770
Cac8I GCNNGC 2 cut(s) 1053, 1491
CaiI CAGNNNCTG 1 cut(s) 437
CfoI GCGC 3 cut(s) 22, 150, 197
Cfr10I RCCGGY 2 cut(s) 309, 335
Cfr13I GGNCC 8 cut(s) 123, 207, 290, 316, 980, 993, 1462, 1603
CseI GACGC 2 cut(s) 346, 1382
CviAII CATG 4 cut(s) 399, 1078, 1142, 1523
DdeI CTNAG 6 cut(s) 623, 1047, 1494, 1545, 1566, 1571
DinI GGCGCC 1 cut(s) 196
DpnI GATC 6 cut(s) 450, 523, 579, 1065, 1338, 1595
DpnII GATC 6 cut(s) 448, 521, 577, 1063, 1336, 1593
EaeI YGGCCR 4 cut(s) 3, 644, 868, 925
Eam1104I CTCTTC 4 cut(s) 34, 357, 1155, 1308
EarI CTCTTC 4 cut(s) 34, 357, 1155, 1308
EciI GGCGGA 2 cut(s) 29, 127
Eco130I CCWWGG 2 cut(s) 517, 1455
Eco24I GRGCYC 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 745
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 2 cut(s) 207, 980
Eco57I CTGAAG 2 cut(s) 459, 1179
Eco88I CYCGRG 1 cut(s) 1278
Eco91I GGTNACC 1 cut(s) 331
EcoNI CCTNNNNNAGG 1 cut(s) 297
EcoO109I RGGNCCY 2 cut(s) 1462, 1603
EcoO65I GGTNACC 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 1028
EcoRII CCWGG 1 cut(s) 1464
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 2 cut(s) 517, 1455
EcoT38I GRGCYC 1 cut(s) 306
EgeI GGCGCC 1 cut(s) 196
EheI GGCGCC 1 cut(s) 196
ErhI CCWWGG 2 cut(s) 517, 1455
FaeI CATG 4 cut(s) 402, 1081, 1145, 1526
FalI AAGNNNNNCTT 6 cut(s) 624, 656, 1305, 1337, 1580, 1612
FaqI GGGAC 4 cut(s) 251, 732, 966, 1208
FatI CATG 4 cut(s) 398, 1077, 1141, 1522
FauI CCCGC 2 cut(s) 114, 138
FauNDI CATATG 1 cut(s) 946
FbaI TGATCA 1 cut(s) 448
FblI GTMKAC 1 cut(s) 850
FokI GGATG 5 cut(s) 878, 1048, 1134, 1188, 1358
FriOI GRGCYC 1 cut(s) 306
FspBI CTAG 1 cut(s) 513
GlaI GCGC 3 cut(s) 21, 149, 196
GsaI CCCAGC 3 cut(s) 317, 343, 1417
GsuI CTGGAG 3 cut(s) 1085, 1487, 1520
HaeII RGCGCY 1 cut(s) 198
HapII CCGG 4 cut(s) 121, 189, 310, 336
HgaI GACGC 2 cut(s) 346, 1382
HhaI GCGC 3 cut(s) 22, 150, 197
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 4 cut(s) 402, 1081, 1145, 1526
Hin6I GCGC 3 cut(s) 20, 148, 195
HinP1I GCGC 3 cut(s) 20, 148, 195
HincII GTYRAC 2 cut(s) 388, 1617
HindII GTYRAC 2 cut(s) 388, 1617
HinfI GANTC 4 cut(s) 349, 458, 808, 833
HpaI GTTAAC 1 cut(s) 388
HpaII CCGG 4 cut(s) 121, 189, 310, 336
HphI GGTGA 3 cut(s) 325, 364, 794
Hpy166II GTNNAC 4 cut(s) 388, 785, 851, 1617
Hpy188III TCNNGA 5 cut(s) 256, 406, 550, 1033, 1385
Hpy8I GTNNAC 4 cut(s) 388, 785, 851, 1617
Hpy99I CGWCG 3 cut(s) 170, 173, 1398
HpyCH4III ACNGT 3 cut(s) 166, 919, 1252
HpyCH4IV ACGT 1 cut(s) 966
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 130, 159, 310, 363, 1138, 1495
HpyF3I CTNAG 6 cut(s) 623, 1047, 1494, 1545, 1566, 1571
HpySE526I ACGT 1 cut(s) 966
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 4 cut(s) 402, 1081, 1145, 1526
HspAI GCGC 3 cut(s) 20, 148, 195
KasI GGCGCC 1 cut(s) 194
Ksp22I TGATCA 1 cut(s) 448
KspAI GTTAAC 1 cut(s) 388
Kzo9I GATC 6 cut(s) 448, 521, 577, 1063, 1336, 1593
LmnI GCTCC 3 cut(s) 158, 776, 821
Lsp1109I GCAGC 4 cut(s) 188, 1268, 1465, 1506
LweI GCATC 3 cut(s) 424, 1166, 1490
MaeI CTAG 1 cut(s) 513
MaeII ACGT 1 cut(s) 966
MaeIII GTNAC 4 cut(s) 331, 370, 796, 882
MalI GATC 6 cut(s) 450, 523, 579, 1065, 1338, 1595
MbiI CCGCTC 1 cut(s) 153
MboI GATC 6 cut(s) 448, 521, 577, 1063, 1336, 1593
MhlI GDGCHC 1 cut(s) 306
MlsI TGGCCA 1 cut(s) 927
MluNI TGGCCA 1 cut(s) 927
Mly113I GGCGCC 1 cut(s) 195
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 2 cut(s) 1264, 1323
Mox20I TGGCCA 1 cut(s) 927
MscI TGGCCA 1 cut(s) 927
MseI TTAA 5 cut(s) 387, 914, 1154, 1352, 1608
MslI CAYNNNNRTG 2 cut(s) 326, 1375
Msp20I TGGCCA 1 cut(s) 927
MspI CCGG 4 cut(s) 121, 189, 310, 336
MspR9I CCNGG 2 cut(s) 121, 1466
Mva1269I GAATGC 2 cut(s) 908, 1217
MvaI CCWGG 1 cut(s) 1466
MvnI CGCG 2 cut(s) 148, 357
MwoI GCNNNNNNNGC 7 cut(s) 11, 130, 159, 310, 363, 1138, 1495
NarI GGCGCC 1 cut(s) 195
NciI CCSGG 1 cut(s) 121
NdeI CATATG 1 cut(s) 946
NdeII GATC 6 cut(s) 448, 521, 577, 1063, 1336, 1593
NlaIII CATG 4 cut(s) 402, 1081, 1145, 1526
NlaIV GGNNCC 4 cut(s) 196, 982, 1019, 1275
NmeAIII GCCGAG 2 cut(s) 226, 896
NmuCI GTSAC 3 cut(s) 331, 370, 882
NspI RCATGY 1 cut(s) 1526
OliI CACNNNNGTG 1 cut(s) 326
PaqCI CACCTGC 1 cut(s) 770
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PctI GAATGC 2 cut(s) 908, 1217
PfeI GAWTC 3 cut(s) 458, 808, 833
PflMI CCANNNNNTGG 1 cut(s) 325
PleI GAGTC 1 cut(s) 343
PluTI GGCGCC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 343
Psp6I CCWGG 1 cut(s) 1464
PspEI GGTNACC 1 cut(s) 331
PspFI CCCAGC 3 cut(s) 313, 339, 1413
PspGI CCWGG 1 cut(s) 1464
PspN4I GGNNCC 4 cut(s) 196, 982, 1019, 1275
PspPI GGNCC 8 cut(s) 123, 207, 290, 316, 980, 993, 1462, 1603
PstNI CAGNNNCTG 1 cut(s) 437
RseI CAYNNNNRTG 2 cut(s) 326, 1375
SaqAI TTAA 5 cut(s) 387, 914, 1154, 1352, 1608
Sau3AI GATC 6 cut(s) 448, 521, 577, 1063, 1336, 1593
Sau96I GGNCC 8 cut(s) 123, 207, 290, 316, 980, 993, 1462, 1603
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 2 cut(s) 121, 1466
SduI GDGCHC 1 cut(s) 306
SfaNI GCATC 3 cut(s) 424, 1166, 1490
SfoI GGCGCC 1 cut(s) 196
SinI GGWCC 2 cut(s) 207, 980
SmiMI CAYNNNNRTG 2 cut(s) 326, 1375
SmlI CTYRAG 2 cut(s) 266, 742
SmoI CTYRAG 2 cut(s) 266, 742
SspDI GGCGCC 1 cut(s) 194
SspI AATATT 1 cut(s) 1328
SspMI CTAG 1 cut(s) 513
StyD4I CCNGG 2 cut(s) 119, 1464
StyI CCWWGG 2 cut(s) 517, 1455
TaaI ACNGT 3 cut(s) 166, 919, 1252
TaiI ACGT 1 cut(s) 969
TaqI TCGA 3 cut(s) 306, 381, 407
TauI GCSGC 7 cut(s) 8, 153, 176, 195, 200, 291, 1231
TfiI GAWTC 3 cut(s) 458, 808, 833
Tru1I TTAA 5 cut(s) 387, 914, 1154, 1352, 1608
Tru9I TTAA 5 cut(s) 387, 914, 1154, 1352, 1608
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 3 cut(s) 331, 370, 882
TseI GCWGC 4 cut(s) 176, 1256, 1478, 1519
Tsp45I GTSAC 3 cut(s) 331, 370, 882
TspDTI ATGAA 4 cut(s) 312, 367, 837, 1362
TspRI CASTG 1 cut(s) 373
Van91I CCANNNNNTGG 1 cut(s) 325
VpaK11BI GGWCC 2 cut(s) 207, 980
XagI CCTNNNNNAGG 1 cut(s) 297
XapI RAATTY 4 cut(s) 617, 1000, 1028, 1577
XceI RCATGY 1 cut(s) 1526
XcmI CCANNNNNNNNNTGG 2 cut(s) 1462, 1594
XmiI GTMKAC 1 cut(s) 850
XspI CTAG 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.