Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015008

Physical Location & Seq

Genomic Coordinates Forward (+)

9698940 .. 9700472

Gene Structure 1533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGTGAAGATTGAGATAGGAAGTGTGGGTGACTCCTTTAGTGTAGCATCTCTTAAGGCTTACTTGTCTGAATTTATCGCAACTCTTCTCTTTGTGTTTGCTGGCGTTGGCTCTGCTCTTGCTTTTGCCAAGCTCACATCCGATGCAGCCTTGGACCCCGCTGGTCTTGTCGCTGTCGCTGTGGCTCACGCCTTTGCCCTTTTCGTTGGTGTTTCCATAGCCGCCAACATCTCCGGCGGACACCTTAACCCCGCCGTGACACTCGGTCTCGCCGTCGGTGGCAACATCACAGTAATAACCGGTTTCTTTTACTGGATTGCTCAATGCCTTGGCTCCATCGTCGCGTGTCTCCTCCTCGTCTTCGTTACCAATGGCGAGAGCGTACCGACTCATGGAGTAGCGGCCGGTTTAGGAGCTATTGAAGGAGTAGTGATGGAGATTGTGGTGACCTTTGCTCTGGTCTACACAGTCTACGCCACAGCGGCTGATCCAAAGAAAGGTTCACTCGGGACCATTGCTCCAATTGCTATCGGTTTCATCGTTGGTGCCAACATCCTCGCAGCGGGTCCCTTTAGCGGTGGTTCCATGAACCCGGCCAGGTCATTTGGACCAGCTGTTGTCAGTGGTGACTTCTCTCAGATATGGATCTACTGGGTGGGTCCACTAGTCGGTGGTGCACTTGCTGGACTCATCTACGGAGACGTCTTCATCGGATCCTACGCTCCAGCTCCCACCACAGAAAGCTACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005275 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006833 GO:0008150 GO:0008324 GO:0008519 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015101 GO:0015200 GO:0015250 GO:0015267 GO:0015318 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0032586 GO:0034220 GO:0042044 GO:0042807 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0072489 GO:0098588 GO:0098655 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

250

Amino Acids

25.08

Weight (kDa)

4.73

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	14 - 232	1.4e-80	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17340 AT5G47450
fragaria_vesca	FvH4_5g19110
malus_domestica	MD06G1056900.v1.1
prunus_persica	Prupe.5G067600_v2.0.a1
pyrus_communis	pycom06g04750
rosa_chinensis	RchiOBHm_Chr7g0203581
rosa_laevigata	RLG00000003516
rosa_multiflora	Rmu_sc0010675.1_g000005
rosa_roxburghii	Rroxscaffold_3G00253660
rosa_rugosa	Rorug07G0077200
rosa_samantha	Rh7AG206900 Rh7BG206400 Rh7CG219500 Rh7DG214100
rosa_wichuraiana	Rw7G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	705
AccB1I	GGYRCC	1 cut(s)	545
AccI	GTMKAC	2 cut(s)	462, 471
AccII	CGCG	1 cut(s)	344
AciI	CCGC	8 cut(s)	159, 222, 237, 252, 401, 482, 563, 576
AclWI	GGATC	4 cut(s)	482, 653, 708, 721
AcoI	YGGCCR	2 cut(s)	402, 594
AcsI	RAATTY	1 cut(s)	71
AcyI	GRCGYC	1 cut(s)	702
AfaI	GTAC	1 cut(s)	384
AfiI	CCNNNNNNNGG	5 cut(s)	392, 497, 562, 575, 668
AflII	CTTAAG	1 cut(s)	53
AgeI	ACCGGT	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	422
AhdI	GACNNNNNGTC	1 cut(s)	264
AhlI	ACTAGT	1 cut(s)	664
AjnI	CCWGG	1 cut(s)	596
AjuI	GAANNNNNNNTTGG	2 cut(s)	484, 516
AluBI	AGCT	5 cut(s)	133, 416, 614, 728, 744
AluI	AGCT	5 cut(s)	133, 416, 614, 728, 744
Alw21I	GWGCWC	1 cut(s)	679
Alw26I	GTCTC	3 cut(s)	272, 353, 693
Alw44I	GTGCAC	1 cut(s)	675
AlwI	GGATC	4 cut(s)	482, 653, 708, 721
AlwNI	CAGNNNCTG	1 cut(s)	485
Ama87I	CYCGRG	1 cut(s)	506
AoxI	GGCC	2 cut(s)	402, 594
ApaLI	GTGCAC	1 cut(s)	675
ApeKI	GCWGC	2 cut(s)	146, 560
ApoI	RAATTY	1 cut(s)	71
AsiGI	ACCGGT	1 cut(s)	299
AspS9I	GGNCC	5 cut(s)	154, 510, 566, 608, 659
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	4 cut(s)	16, 41, 457, 638
AvaI	CYCGRG	1 cut(s)	506
AvaII	GGWCC	5 cut(s)	154, 510, 566, 608, 659
BaeGI	GKGCMC	1 cut(s)	679
BamHI	GGATCC	1 cut(s)	713
BanI	GGYRCC	1 cut(s)	545
BbsI	GAAGAC	2 cut(s)	352, 697
Bbv12I	GWGCWC	1 cut(s)	679
BbvI	GCAGC	2 cut(s)	158, 572
BccI	CCATC	2 cut(s)	344, 427
BceAI	ACGGC	2 cut(s)	239, 257
BciT130I	CCWGG	1 cut(s)	598
BcnI	CCSGG	1 cut(s)	593
BcoDI	GTCTC	3 cut(s)	272, 353, 693
BcuI	ACTAGT	1 cut(s)	664
BfaI	CTAG	1 cut(s)	665
BfrI	CTTAAG	1 cut(s)	53
BglI	GCCNNNNNGGC	1 cut(s)	482
BisI	GCNGC	5 cut(s)	147, 222, 402, 483, 561
BlsI	GCNGC	5 cut(s)	148, 223, 403, 484, 562
Bme1390I	CCNGG	2 cut(s)	593, 598
Bme18I	GGWCC	5 cut(s)	154, 510, 566, 608, 659
BmeRI	GACNNNNNGTC	1 cut(s)	264
BmeT110I	CYCGRG	1 cut(s)	506
BmgT120I	GGNCC	5 cut(s)	154, 510, 566, 608, 659
BmiI	GGNNCC	9 cut(s)	156, 334, 511, 547, 567, 568, 583, 660, 715
BmrFI	CCNGG	2 cut(s)	593, 598
BmrI	ACTGGG	1 cut(s)	661
BmsI	GCATC	2 cut(s)	56, 133
BmuI	ACTGGG	1 cut(s)	661
BpiI	GAAGAC	2 cut(s)	352, 697
BpmI	CTGGAG	1 cut(s)	708
BpuMI	CCSGG	1 cut(s)	593
BsaBI	GATNNNNATC	1 cut(s)	644
BsaHI	GRCGYC	1 cut(s)	702
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	150, 328
BsaWI	WCCGGW	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	5 cut(s)	392, 497, 562, 575, 668
Bse118I	RCCGGY	2 cut(s)	299, 404
Bse1I	ACTGG	2 cut(s)	317, 656
Bse3DI	GCAATG	1 cut(s)	513
Bse8I	GATNNNNATC	1 cut(s)	644
BseBI	CCWGG	1 cut(s)	598
BseDI	CCNNGG	2 cut(s)	150, 328
BseGI	GGATG	2 cut(s)	137, 552
BseJI	GATNNNNATC	1 cut(s)	644
BseLI	CCNNNNNNNGG	5 cut(s)	392, 497, 562, 575, 668
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	1 cut(s)	650
BseNI	ACTGG	2 cut(s)	317, 656
BseRI	GAGGAG	2 cut(s)	341, 344
BseSI	GKGCMC	1 cut(s)	679
BseX3I	CGGCCG	1 cut(s)	402
BseXI	GCAGC	2 cut(s)	158, 572
Bsh1236I	CGCG	1 cut(s)	344
Bsh1285I	CGRYCG	1 cut(s)	405
BshFI	GGCC	2 cut(s)	404, 596
BshNI	GGYRCC	1 cut(s)	545
BshTI	ACCGGT	1 cut(s)	299
BsiEI	CGRYCG	1 cut(s)	405
BsiHKAI	GWGCWC	1 cut(s)	679
BsiHKCI	CYCGRG	1 cut(s)	506
BsiSI	CCGG	4 cut(s)	234, 300, 405, 593
BslFI	GGGAC	2 cut(s)	523, 552
BslI	CCNNNNNNNGG	5 cut(s)	392, 497, 562, 575, 668
BsmAI	GTCTC	3 cut(s)	272, 353, 693
BsmBI	CGTCTC	1 cut(s)	693
BsmFI	GGGAC	2 cut(s)	523, 552
BsnI	GGCC	2 cut(s)	404, 596
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	679
Bsp143I	GATC	3 cut(s)	487, 645, 713
BspACI	CCGC	8 cut(s)	159, 222, 237, 252, 401, 482, 563, 576
BspANI	GGCC	2 cut(s)	404, 596
BspCNI	CTCAG	1 cut(s)	649
BspFNI	CGCG	1 cut(s)	344
BspLI	GGNNCC	9 cut(s)	156, 334, 511, 547, 567, 568, 583, 660, 715
BspPI	GGATC	4 cut(s)	482, 653, 708, 721
BspT107I	GGYRCC	1 cut(s)	545
BspTI	CTTAAG	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	513
BsrFI	RCCGGY	2 cut(s)	299, 404
BsrI	ACTGG	2 cut(s)	317, 656
BssAI	RCCGGY	2 cut(s)	299, 404
BssECI	CCNNGG	2 cut(s)	150, 328
BssMI	GATC	3 cut(s)	487, 645, 713
BssNI	GRCGYC	1 cut(s)	702
BssT1I	CCWWGG	2 cut(s)	150, 328
Bst2UI	CCWGG	1 cut(s)	598
Bst4CI	ACNGT	2 cut(s)	292, 469
Bst6I	CTCTTC	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	702
BstAFI	CTTAAG	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	636
BstEII	GGTNACC	1 cut(s)	445
BstF5I	GGATG	2 cut(s)	137, 552
BstFNI	CGCG	1 cut(s)	344
BstKTI	GATC	3 cut(s)	490, 648, 716
BstMAI	GTCTC	3 cut(s)	272, 353, 693
BstMBI	GATC	3 cut(s)	487, 645, 713
BstMCI	CGRYCG	1 cut(s)	405
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 524
BstNI	CCWGG	1 cut(s)	598
BstPI	GGTNACC	1 cut(s)	445
BstSCI	CCNGG	2 cut(s)	591, 596
BstSLI	GKGCMC	1 cut(s)	679
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	2 cut(s)	158, 572
BstV2I	GAAGAC	2 cut(s)	352, 697
BstX2I	RGATCY	2 cut(s)	645, 713
BstYI	RGATCY	2 cut(s)	645, 713
BstZI	CGGCCG	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	404, 596
BtsCI	GGATG	2 cut(s)	137, 552
BtsIMutI	CAGTG	1 cut(s)	628
Cac8I	GCNNGC	1 cut(s)	103
CaiI	CAGNNNCTG	1 cut(s)	485
Cfr10I	RCCGGY	2 cut(s)	299, 404
Cfr13I	GGNCC	5 cut(s)	154, 510, 566, 608, 659
Csp6I	GTAC	1 cut(s)	383
CspAI	ACCGGT	1 cut(s)	299
CviAII	CATG	2 cut(s)	392, 586
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	1 cut(s)	636
DpnI	GATC	3 cut(s)	489, 647, 715
DpnII	GATC	3 cut(s)	487, 645, 713
DriI	GACNNNNNGTC	1 cut(s)	264
EaeI	YGGCCR	2 cut(s)	402, 594
EagI	CGGCCG	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	90
Eam1105I	GACNNNNNGTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	90
EciI	GGCGGA	1 cut(s)	252
EclXI	CGGCCG	1 cut(s)	402
Eco130I	CCWWGG	2 cut(s)	150, 328
Eco31I	GGTCTC	1 cut(s)	272
Eco47I	GGWCC	5 cut(s)	154, 510, 566, 608, 659
Eco52I	CGGCCG	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	506
Eco91I	GGTNACC	1 cut(s)	445
EcoO109I	RGGNCCY	1 cut(s)	566
EcoO65I	GGTNACC	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	596
EcoT14I	CCWWGG	2 cut(s)	150, 328
ErhI	CCWWGG	2 cut(s)	150, 328
Esp3I	CGTCTC	1 cut(s)	693
FaeI	CATG	2 cut(s)	395, 589
FaiI	YATR	4 cut(s)	218, 393, 587, 643
FalI	AAGNNNNNCTT	3 cut(s)	47, 79, 733
FaqI	GGGAC	2 cut(s)	523, 552
FatI	CATG	2 cut(s)	391, 585
FauI	CCCGC	3 cut(s)	166, 259, 556
FblI	GTMKAC	2 cut(s)	462, 471
Fnu4HI	GCNGC	5 cut(s)	147, 222, 402, 483, 561
FokI	GGATG	2 cut(s)	124, 539
Fsp4HI	GCNGC	5 cut(s)	147, 222, 402, 483, 561
FspBI	CTAG	1 cut(s)	665
GluI	GCNGC	5 cut(s)	147, 222, 402, 483, 561
GsuI	CTGGAG	1 cut(s)	708
HaeIII	GGCC	2 cut(s)	404, 596
HapII	CCGG	4 cut(s)	234, 300, 405, 593
Hin1I	GRCGYC	1 cut(s)	702
Hin1II	CATG	2 cut(s)	395, 589
HinfI	GANTC	3 cut(s)	32, 388, 687
HpaII	CCGG	4 cut(s)	234, 300, 405, 593
HphI	GGTGA	4 cut(s)	16, 41, 457, 638
Hpy166II	GTNNAC	5 cut(s)	463, 472, 503, 662, 677
Hpy188I	TCNGA	4 cut(s)	70, 142, 639, 713
Hpy188III	TCNNGA	1 cut(s)	508
Hpy8I	GTNNAC	5 cut(s)	463, 472, 503, 662, 677
Hpy99I	CGWCG	2 cut(s)	278, 344
HpyAV	CCTTC	1 cut(s)	416
HpyCH4III	ACNGT	2 cut(s)	292, 469
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	2 cut(s)	146, 677
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 524
HpyF3I	CTNAG	1 cut(s)	636
HpySE526I	ACGT	1 cut(s)	702
Hsp92I	GRCGYC	1 cut(s)	702
Hsp92II	CATG	2 cut(s)	395, 589
KflI	GGGWCCC	1 cut(s)	566
Kzo9I	GATC	3 cut(s)	487, 645, 713
LmnI	GCTCC	5 cut(s)	338, 413, 523, 727, 733
Lsp1109I	GCAGC	2 cut(s)	158, 572
LweI	GCATC	2 cut(s)	56, 133
MaeI	CTAG	1 cut(s)	665
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	5 cut(s)	29, 256, 364, 445, 626
MalI	GATC	3 cut(s)	489, 647, 715
MboI	GATC	3 cut(s)	487, 645, 713
MboII	GAAGA	4 cut(s)	19, 77, 352, 697
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	2 cut(s)	645, 713
MhlI	GDGCHC	1 cut(s)	679
MluCI	AATT	2 cut(s)	71, 522
MlyI	GAGTC	3 cut(s)	26, 382, 681
MnlI	CCTC	3 cut(s)	362, 365, 566
MseI	TTAA	2 cut(s)	54, 246
MspA1I	CMGCKG	4 cut(s)	161, 482, 563, 614
MspCI	CTTAAG	1 cut(s)	53
MspI	CCGG	4 cut(s)	234, 300, 405, 593
MspR9I	CCNGG	2 cut(s)	593, 598
MunI	CAATTG	1 cut(s)	522
MvaI	CCWGG	1 cut(s)	598
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	482, 524
NciI	CCSGG	1 cut(s)	593
NdeII	GATC	3 cut(s)	487, 645, 713
NlaIII	CATG	2 cut(s)	395, 589
NlaIV	GGNNCC	9 cut(s)	156, 334, 511, 547, 567, 568, 583, 660, 715
NmuCI	GTSAC	4 cut(s)	29, 256, 445, 626
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 537
PinAI	ACCGGT	1 cut(s)	299
PkrI	GCNGC	5 cut(s)	148, 223, 403, 484, 562
PleI	GAGTC	3 cut(s)	26, 382, 681
PpsI	GAGTC	3 cut(s)	26, 382, 681
PpuMI	RGGWCCY	1 cut(s)	566
Psp5II	RGGWCCY	1 cut(s)	566
Psp6I	CCWGG	1 cut(s)	596
PspEI	GGTNACC	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	596
PspN4I	GGNNCC	9 cut(s)	156, 334, 511, 547, 567, 568, 583, 660, 715
PspPI	GGNCC	5 cut(s)	154, 510, 566, 608, 659
PspPPI	RGGWCCY	1 cut(s)	566
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	2 cut(s)	645, 713
PvuII	CAGCTG	1 cut(s)	614
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
SaqAI	TTAA	2 cut(s)	54, 246
SatI	GCNGC	5 cut(s)	147, 222, 402, 483, 561
Sau3AI	GATC	3 cut(s)	487, 645, 713
Sau96I	GGNCC	5 cut(s)	154, 510, 566, 608, 659
SchI	GAGTC	3 cut(s)	26, 382, 681
ScrFI	CCNGG	2 cut(s)	593, 598
SduI	GDGCHC	1 cut(s)	679
SfaNI	GCATC	2 cut(s)	56, 133
SinI	GGWCC	5 cut(s)	154, 510, 566, 608, 659
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SpeI	ACTAGT	1 cut(s)	664
Sse9I	AATT	2 cut(s)	71, 522
SsiI	CCGC	8 cut(s)	159, 222, 237, 252, 401, 482, 563, 576
SspMI	CTAG	1 cut(s)	665
StyD4I	CCNGG	2 cut(s)	591, 596
StyI	CCWWGG	2 cut(s)	150, 328
TaaI	ACNGT	2 cut(s)	292, 469
TaiI	ACGT	1 cut(s)	705
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	2 cut(s)	71, 522
TauI	GCSGC	3 cut(s)	224, 404, 485
Tru1I	TTAA	2 cut(s)	54, 246
Tru9I	TTAA	2 cut(s)	54, 246
TscAI	CASTG	1 cut(s)	628
TseFI	GTSAC	4 cut(s)	29, 256, 445, 626
TseI	GCWGC	2 cut(s)	146, 560
Tsp45I	GTSAC	4 cut(s)	29, 256, 445, 626
TspDTI	ATGAA	3 cut(s)	526, 602, 697
TspGWI	ACGGA	1 cut(s)	711
TspRI	CASTG	1 cut(s)	628
Vha464I	CTTAAG	1 cut(s)	53
VneI	GTGCAC	1 cut(s)	675
VpaK11BI	GGWCC	5 cut(s)	154, 510, 566, 608, 659
XapI	RAATTY	1 cut(s)	71
XmiI	GTMKAC	2 cut(s)	462, 471
XspI	CTAG	1 cut(s)	665
ZraI	GACGTC	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.