Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015008

Physical Location & Seq

Genomic Coordinates Forward (+)

11027658 .. 11029322

Gene Structure 1665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGTGAAGATTGGTTTTGGTAGCTTTGGTGACTCTTTCAGTGTTTGCTCCCTCAAGTCCTACCTAGCTGAGTTCATCGCCACCCTTCTTTTCGTGTTTGCTGGCGTTGGCTCTGCCATCGCTTATGATAAGCTAACTACAGATGCAGCTTTAGACCCTGCCGGCCTAGTCGCGGTGGCCGTAGCCCATGCATTTGCTCTGTTTGTGGGGGTCTCCGTCGCAGCAAACATCTCCGGTGGCCATTTGAACCCGGCTGTCACTTTTGGATTGGCTATTGGAGGTAACATCACCATCCTAACCGGCATTTTCTACTGGATTGCTCAACTCTTGGGCTCCATCGTCGCTTGCTTCCTCCTCAAGTTTGTCACCAGCGAGAGTGTGCCAACCCATGGACTTGCCTCTGGTGTAGGAGCTATTGAAGGAGTTGTGTTTGAAATCATCATAACCTTTGGTCTGGTCTACACTGTGTATGCCACAGCCGCTGACCCTAAGAAGGGTTCACTTGGGACCATAGCACCTATTGCAATAGGGTTCATTGTTGGTGCCAATATCCTTGCGGCCGGGCCGTTCAGCGGTGGATCTATGAATCCAGCTCGCTCATTTGGCCCGGCCGTTGTTAGCGGAAACTTCGCTGACAACTGGATCTATTGGGTCGGCCCATTAGTTGGTGGAGGTTTGGCTGGCCTAGTCTATGGTGACATTTTCATTGGATCCTACTCTCAAGTACCAATTTCTGAAGATTATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005275 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006833 GO:0008150 GO:0008324 GO:0008519 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015101 GO:0015200 GO:0015250 GO:0015267 GO:0015318 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0032586 GO:0034220 GO:0042044 GO:0042807 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0072489 GO:0098588 GO:0098655 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

250

Amino Acids

25.28

Weight (kDa)

4.73

Isoelectric Point (pI)

27.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	15 - 231	1.1e-80	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17340 AT5G47450
fragaria_vesca	FvH4_5g19110
malus_domestica	MD06G1056900.v1.1
prunus_persica	Prupe.5G067600_v2.0.a1
pyrus_communis	pycom06g04750
rosa_chinensis	RchiOBHm_Chr7g0203581
rosa_laevigata	RLG00000003516
rosa_multiflora	Rmu_sc0010675.1_g000005
rosa_roxburghii	Rroxscaffold_3G00253660
rosa_rugosa	Rorug07G0077200
rosa_samantha	Rh7AG206900 Rh7BG206400 Rh7CG219500 Rh7DG214100
rosa_wichuraiana	Rw7G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	542
AccB7I	CCANNNNNTGG	2 cut(s)	389, 665
AccI	GTMKAC	1 cut(s)	459
AccII	CGCG	1 cut(s)	173
AciI	CCGC	5 cut(s)	173, 480, 557, 573, 621
AclWI	GGATC	4 cut(s)	586, 650, 705, 718
AcoI	YGGCCR	4 cut(s)	177, 238, 558, 609
AfaI	GTAC	1 cut(s)	726
AfiI	CCNNNNNNNGG	6 cut(s)	172, 389, 493, 494, 572, 665
AgsI	TTSAA	3 cut(s)	247, 419, 434
AluBI	AGCT	6 cut(s)	24, 68, 133, 149, 413, 593
AluI	AGCT	6 cut(s)	24, 68, 133, 149, 413, 593
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	4 cut(s)	586, 650, 705, 718
AlwNI	CAGNNNCTG	1 cut(s)	482
AoxI	GGCC	9 cut(s)	163, 177, 238, 558, 563, 604, 609, 655, 682
ApeKI	GCWGC	2 cut(s)	146, 221
AspS9I	GGNCC	4 cut(s)	507, 563, 605, 656
AsuC2I	CCSGG	3 cut(s)	251, 562, 608
AsuHPI	GGTGA	5 cut(s)	16, 41, 280, 358, 707
AvaII	GGWCC	1 cut(s)	507
BalI	TGGCCA	1 cut(s)	240
BamHI	GGATCC	1 cut(s)	710
BanI	GGYRCC	1 cut(s)	542
BanII	GRGCYC	1 cut(s)	335
BbvI	GCAGC	2 cut(s)	158, 233
BccI	CCATC	3 cut(s)	125, 299, 344
BceAI	ACGGC	3 cut(s)	164, 550, 596
BcnI	CCSGG	3 cut(s)	251, 562, 608
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	3 cut(s)	65, 167, 686
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	4 cut(s)	147, 222, 480, 558
BlsI	GCNGC	4 cut(s)	148, 223, 481, 559
Bme1390I	CCNGG	3 cut(s)	251, 562, 608
Bme18I	GGWCC	1 cut(s)	507
BmgT120I	GGNCC	4 cut(s)	507, 563, 605, 656
BmiI	GGNNCC	4 cut(s)	334, 508, 544, 712
BmrFI	CCNGG	3 cut(s)	251, 562, 608
BmsI	GCATC	1 cut(s)	133
BpuEI	CTTGAG	3 cut(s)	38, 341, 705
BpuMI	CCSGG	3 cut(s)	251, 562, 608
BsaI	GGTCTC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	388
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	6 cut(s)	172, 389, 493, 494, 572, 665
Bse118I	RCCGGY	2 cut(s)	161, 299
Bse1I	ACTGG	2 cut(s)	317, 644
BseDI	CCNNGG	1 cut(s)	388
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	6 cut(s)	172, 389, 493, 494, 572, 665
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	2 cut(s)	317, 644
BseRI	GAGGAG	1 cut(s)	344
BseX3I	CGGCCG	2 cut(s)	558, 609
BseXI	GCAGC	2 cut(s)	158, 233
Bsh1236I	CGCG	1 cut(s)	173
Bsh1285I	CGRYCG	2 cut(s)	561, 612
BshFI	GGCC	9 cut(s)	165, 179, 240, 560, 565, 606, 611, 657, 684
BshNI	GGYRCC	1 cut(s)	542
BsiEI	CGRYCG	2 cut(s)	561, 612
BsiSI	CCGG	6 cut(s)	162, 234, 251, 300, 561, 608
BslFI	GGGAC	1 cut(s)	520
BslI	CCNNNNNNNGG	6 cut(s)	172, 389, 493, 494, 572, 665
BsmAI	GTCTC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	520
BsnI	GGCC	9 cut(s)	165, 179, 240, 560, 565, 606, 611, 657, 684
Bso31I	GGTCTC	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp143I	GATC	3 cut(s)	578, 642, 710
Bsp19I	CCATGG	1 cut(s)	388
BspACI	CCGC	5 cut(s)	173, 480, 557, 573, 621
BspANI	GGCC	9 cut(s)	165, 179, 240, 560, 565, 606, 611, 657, 684
BspCNI	CTCAG	1 cut(s)	61
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	4 cut(s)	334, 508, 544, 712
BspPI	GGATC	4 cut(s)	586, 650, 705, 718
BspT107I	GGYRCC	1 cut(s)	542
BspTNI	GGTCTC	1 cut(s)	217
BsrFI	RCCGGY	2 cut(s)	161, 299
BsrI	ACTGG	2 cut(s)	317, 644
BssAI	RCCGGY	2 cut(s)	161, 299
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	3 cut(s)	578, 642, 710
BssT1I	CCWWGG	1 cut(s)	388
Bst4CI	ACNGT	1 cut(s)	466
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstC8I	GCNNGC	5 cut(s)	103, 163, 346, 595, 682
BstDEI	CTNAG	2 cut(s)	69, 489
BstDSI	CCRYGG	1 cut(s)	388
BstF5I	GGATG	1 cut(s)	291
BstFNI	CGCG	1 cut(s)	173
BstKTI	GATC	3 cut(s)	581, 645, 713
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	3 cut(s)	578, 642, 710
BstMCI	CGRYCG	2 cut(s)	561, 612
BstMWI	GCNNNNNNNGC	3 cut(s)	479, 521, 603
BstSCI	CCNGG	3 cut(s)	249, 560, 606
BstSFI	CTRYAG	1 cut(s)	138
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	158, 233
BstX2I	RGATCY	3 cut(s)	578, 642, 710
BstYI	RGATCY	3 cut(s)	578, 642, 710
BstZI	CGGCCG	2 cut(s)	558, 609
BsuRI	GGCC	9 cut(s)	165, 179, 240, 560, 565, 606, 611, 657, 684
BtgI	CCRYGG	1 cut(s)	388
BtgZI	GCGATG	2 cut(s)	61, 103
BtsCI	GGATG	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	46, 462
Cac8I	GCNNGC	5 cut(s)	103, 163, 346, 595, 682
CaiI	CAGNNNCTG	1 cut(s)	482
Cfr10I	RCCGGY	2 cut(s)	161, 299
Cfr13I	GGNCC	4 cut(s)	507, 563, 605, 656
Csp6I	GTAC	1 cut(s)	725
CviAII	CATG	2 cut(s)	188, 389
CviQI	GTAC	1 cut(s)	725
DdeI	CTNAG	2 cut(s)	69, 489
DpnI	GATC	3 cut(s)	580, 644, 712
DpnII	GATC	3 cut(s)	578, 642, 710
EaeI	YGGCCR	4 cut(s)	177, 238, 558, 609
EagI	CGGCCG	2 cut(s)	558, 609
EclXI	CGGCCG	2 cut(s)	558, 609
Eco130I	CCWWGG	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	335
Eco31I	GGTCTC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	507
Eco52I	CGGCCG	2 cut(s)	558, 609
EcoT14I	CCWWGG	1 cut(s)	388
EcoT22I	ATGCAT	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	2 cut(s)	191, 392
FaiI	YATR	9 cut(s)	126, 189, 390, 443, 471, 512, 584, 693, 744
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	2 cut(s)	187, 388
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	4 cut(s)	147, 222, 480, 558
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	1 cut(s)	335
Fsp4HI	GCNGC	4 cut(s)	147, 222, 480, 558
FspBI	CTAG	3 cut(s)	65, 167, 686
GluI	GCNGC	4 cut(s)	147, 222, 480, 558
HaeIII	GGCC	9 cut(s)	165, 179, 240, 560, 565, 606, 611, 657, 684
HapII	CCGG	6 cut(s)	162, 234, 251, 300, 561, 608
Hin1II	CATG	2 cut(s)	191, 392
HinfI	GANTC	2 cut(s)	32, 586
HpaII	CCGG	6 cut(s)	162, 234, 251, 300, 561, 608
HphI	GGTGA	5 cut(s)	16, 41, 280, 358, 707
Hpy166II	GTNNAC	2 cut(s)	460, 500
Hpy188I	TCNGA	1 cut(s)	736
Hpy8I	GTNNAC	2 cut(s)	460, 500
Hpy99I	CGWCG	2 cut(s)	221, 344
HpyAV	CCTTC	3 cut(s)	95, 413, 487
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	3 cut(s)	146, 191, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	479, 521, 603
HpyF3I	CTNAG	2 cut(s)	69, 489
Hsp92II	CATG	2 cut(s)	191, 392
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	578, 642, 710
LmnI	GCTCC	3 cut(s)	53, 338, 410
Lsp1109I	GCAGC	2 cut(s)	158, 233
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	3 cut(s)	65, 167, 686
MaeIII	GTNAC	5 cut(s)	29, 256, 281, 364, 695
MalI	GATC	3 cut(s)	580, 644, 712
MboI	GATC	3 cut(s)	578, 642, 710
MboII	GAAGA	2 cut(s)	19, 749
MflI	RGATCY	3 cut(s)	578, 642, 710
MhlI	GDGCHC	1 cut(s)	335
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	1 cut(s)	729
MluNI	TGGCCA	1 cut(s)	240
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	6 cut(s)	62, 272, 362, 365, 409, 665
Mox20I	TGGCCA	1 cut(s)	240
Mph1103I	ATGCAT	1 cut(s)	193
MroNI	GCCGGC	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	240
MspA1I	CMGCKG	2 cut(s)	482, 573
MspI	CCGG	6 cut(s)	162, 234, 251, 300, 561, 608
MspR9I	CCNGG	3 cut(s)	251, 562, 608
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	3 cut(s)	479, 521, 603
NaeI	GCCGGC	1 cut(s)	163
NciI	CCSGG	3 cut(s)	251, 562, 608
NcoI	CCATGG	1 cut(s)	388
NdeII	GATC	3 cut(s)	578, 642, 710
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	2 cut(s)	191, 392
NlaIV	GGNNCC	4 cut(s)	334, 508, 544, 712
NmuCI	GTSAC	4 cut(s)	29, 256, 364, 695
NsiI	ATGCAT	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	586
PflMI	CCANNNNNTGG	2 cut(s)	389, 665
PkrI	GCNGC	4 cut(s)	148, 223, 481, 559
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PspN4I	GGNNCC	4 cut(s)	334, 508, 544, 712
PspPI	GGNCC	4 cut(s)	507, 563, 605, 656
PstNI	CAGNNNCTG	1 cut(s)	482
PsuI	RGATCY	3 cut(s)	578, 642, 710
RsaI	GTAC	1 cut(s)	726
RsaNI	GTAC	1 cut(s)	725
SatI	GCNGC	4 cut(s)	147, 222, 480, 558
Sau3AI	GATC	3 cut(s)	578, 642, 710
Sau96I	GGNCC	4 cut(s)	507, 563, 605, 656
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	3 cut(s)	251, 562, 608
SduI	GDGCHC	1 cut(s)	335
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	507
SmlI	CTYRAG	3 cut(s)	53, 356, 720
SmoI	CTYRAG	3 cut(s)	53, 356, 720
Sse9I	AATT	1 cut(s)	729
SsiI	CCGC	5 cut(s)	173, 480, 557, 573, 621
SspMI	CTAG	3 cut(s)	65, 167, 686
StyD4I	CCNGG	3 cut(s)	249, 560, 606
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	466
TasI	AATT	1 cut(s)	729
TauI	GCSGC	2 cut(s)	482, 560
TfiI	GAWTC	1 cut(s)	586
TscAI	CASTG	2 cut(s)	46, 469
TseFI	GTSAC	4 cut(s)	29, 256, 364, 695
TseI	GCWGC	2 cut(s)	146, 221
Tsp45I	GTSAC	4 cut(s)	29, 256, 364, 695
TspDTI	ATGAA	4 cut(s)	64, 523, 599, 694
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	2 cut(s)	46, 469
Van91I	CCANNNNNTGG	2 cut(s)	389, 665
VpaK11BI	GGWCC	1 cut(s)	507
XmiI	GTMKAC	1 cut(s)	459
XspI	CTAG	3 cut(s)	65, 167, 686
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.