Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015008

Physical Location & Seq

Genomic Coordinates Reverse (-)

19248249 .. 19249622

Gene Structure 1374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGTGAAGATCGAAGTTGGAAGTGTGGGAGACTCATTCAGTGTATCATCTCTTAAAGCTTACTTGTCTGAGTTCATCGCAACTCTTCTCTTCGTATTCGCAGGCGTTGGCTCTGCTGTTGCGTTTGCCAAACTAACCTCTGATGGAGCCTTGGACCCAGCTGGTCTTGTAGCAATTGCAATTGCTCACGCGTTTGCTCTTTTCGTTGGAGTTTCCATTGCGGCTAACATTTCTGGTGGTCACCTTAACCCAGCCGTGACTCTTGGCCTTGCCATCGGCGGAAACATAACACTCATCACAGGTTTCTTCTATTGGATTGCTCAGTGTCTTGGCTCCATCGTCGCTTGTCTTCTCCTCGTCTTTGTTACTAATGGCAAGAGCGTACCGACCCACGGGGTCTCAGCCGGTCTAGGAGCGGTCGAAGGTGTCGTCATGGAGATCGTTGTGACCTTTGCATTGGTCTACACCGTTTACGCCACAGCAGCTGATCCAAAGAAAGGATCGCTAGGGACCATCGCTCCAATCGCCATCGGCTTCATAGTTGGTGCCAACATCCTCGCTGCTGGTCCATTCAGTGGTGGCTCCATGAATCCAGCAAGGTCGTTCGGACCAGCTGTTGTCAGTGGTGACTTGTCCCAAATCTGGATCTATTGGGTGGGACCACTTGTGGGTGGTGCACTCGCGGGACTTATCTACGGTGATGTGTTCATCGGTTCTTATGAAGCGGTAGAAACCCGTGAGATCCGAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005275 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006833 GO:0008150 GO:0008324 GO:0008519 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015101 GO:0015200 GO:0015250 GO:0015267 GO:0015318 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0032586 GO:0034220 GO:0042044 GO:0042807 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0072489 GO:0098588 GO:0098655 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

250

Amino Acids

25.25

Weight (kDa)

5.21

Isoelectric Point (pI)

23.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	14 - 232	2.6e-80	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17340 AT5G47450
fragaria_vesca	FvH4_5g19110
malus_domestica	MD06G1056900.v1.1
prunus_persica	Prupe.5G067600_v2.0.a1
pyrus_communis	pycom06g04750
rosa_chinensis	RchiOBHm_Chr7g0203581
rosa_laevigata	RLG00000003516
rosa_multiflora	Rmu_sc0010675.1_g000005
rosa_roxburghii	Rroxscaffold_3G00253660
rosa_rugosa	Rorug07G0077200
rosa_samantha	Rh7AG206900 Rh7BG206400 Rh7CG219500 Rh7DG214100
rosa_wichuraiana	Rw7G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	545
AccB7I	CCANNNNNTGG	1 cut(s)	575
AccBSI	CCGCTC	1 cut(s)	416
AccI	GTMKAC	1 cut(s)	462
AccII	CGCG	2 cut(s)	191, 683
AciI	CCGC	5 cut(s)	221, 279, 416, 683, 725
AclWI	GGATC	4 cut(s)	482, 508, 653, 736
AfaI	GTAC	1 cut(s)	384
AfiI	CCNNNNNNNGG	5 cut(s)	392, 497, 575, 642, 668
AflIII	ACRYGT	1 cut(s)	189
AluBI	AGCT	4 cut(s)	59, 161, 485, 614
AluI	AGCT	4 cut(s)	59, 161, 485, 614
Alw21I	GWGCWC	1 cut(s)	679
Alw26I	GTCTC	2 cut(s)	24, 403
Alw44I	GTGCAC	1 cut(s)	675
AlwI	GGATC	4 cut(s)	482, 508, 653, 736
AlwNI	CAGNNNCTG	1 cut(s)	485
AoxI	GGCC	1 cut(s)	265
ApaLI	GTGCAC	1 cut(s)	675
ApeKI	GCWGC	2 cut(s)	482, 560
ArsI	GACNNNNNNTTYG	2 cut(s)	414, 446
AspS9I	GGNCC	5 cut(s)	154, 510, 566, 608, 659
AsuHPI	GGTGA	4 cut(s)	16, 233, 638, 710
AvaII	GGWCC	5 cut(s)	154, 510, 566, 608, 659
BaeGI	GKGCMC	1 cut(s)	679
BanI	GGYRCC	1 cut(s)	545
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	679
BbvI	GCAGC	2 cut(s)	494, 547
BccI	CCATC	5 cut(s)	137, 281, 344, 521, 536
BceAI	ACGGC	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	24, 403
BfaI	CTAG	2 cut(s)	410, 506
BisI	GCNGC	3 cut(s)	222, 483, 561
BlsI	GCNGC	3 cut(s)	223, 484, 562
Bme18I	GGWCC	5 cut(s)	154, 510, 566, 608, 659
BmgT120I	GGNCC	5 cut(s)	154, 510, 566, 608, 659
BmiI	GGNNCC	7 cut(s)	148, 156, 334, 511, 547, 583, 660
BpiI	GAAGAC	1 cut(s)	341
BsaI	GGTCTC	1 cut(s)	403
BsaJI	CCNNGG	2 cut(s)	150, 391
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	5 cut(s)	392, 497, 575, 642, 668
Bse118I	RCCGGY	1 cut(s)	404
Bse3DI	GCAATG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	150, 391
BseGI	GGATG	1 cut(s)	552
BseLI	CCNNNNNNNGG	5 cut(s)	392, 497, 575, 642, 668
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	3 cut(s)	60, 335, 414
BseRI	GAGGAG	1 cut(s)	344
BseSI	GKGCMC	1 cut(s)	679
BseXI	GCAGC	2 cut(s)	494, 547
BseYI	CCCAGC	2 cut(s)	157, 250
Bsh1236I	CGCG	2 cut(s)	191, 683
Bsh1285I	CGRYCG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	267
BshNI	GGYRCC	1 cut(s)	545
BsiEI	CGRYCG	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	679
BsiSI	CCGG	1 cut(s)	405
BslFI	GGGAC	4 cut(s)	523, 619, 672, 699
BslI	CCNNNNNNNGG	5 cut(s)	392, 497, 575, 642, 668
BsmAI	GTCTC	2 cut(s)	24, 403
BsmFI	GGGAC	4 cut(s)	523, 619, 672, 699
BsnI	GGCC	1 cut(s)	267
Bso31I	GGTCTC	1 cut(s)	403
Bsp1286I	GDGCHC	1 cut(s)	679
Bsp143I	GATC	6 cut(s)	9, 438, 487, 500, 645, 741
BspACI	CCGC	5 cut(s)	221, 279, 416, 683, 725
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	3 cut(s)	61, 334, 413
BspFNI	CGCG	2 cut(s)	191, 683
BspLI	GGNNCC	7 cut(s)	148, 156, 334, 511, 547, 583, 660
BspPI	GGATC	4 cut(s)	482, 508, 653, 736
BspT107I	GGYRCC	1 cut(s)	545
BspTNI	GGTCTC	1 cut(s)	403
BsrBI	CCGCTC	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	404
BssAI	RCCGGY	1 cut(s)	404
BssECI	CCNNGG	2 cut(s)	150, 391
BssMI	GATC	6 cut(s)	9, 438, 487, 500, 645, 741
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	469, 698
Bst6I	CTCTTC	2 cut(s)	90, 95
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	3 cut(s)	69, 321, 400
BstDSI	CCRYGG	1 cut(s)	391
BstEII	GGTNACC	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	552
BstFNI	CGCG	2 cut(s)	191, 683
BstKTI	GATC	6 cut(s)	12, 441, 490, 503, 648, 744
BstMAI	GTCTC	2 cut(s)	24, 403
BstMBI	GATC	6 cut(s)	9, 438, 487, 500, 645, 741
BstMCI	CGRYCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 524
BstPI	GGTNACC	1 cut(s)	239
BstSLI	GKGCMC	1 cut(s)	679
BstUI	CGCG	2 cut(s)	191, 683
BstV1I	GCAGC	2 cut(s)	494, 547
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	2 cut(s)	645, 741
BstYI	RGATCY	2 cut(s)	645, 741
BsuRI	GGCC	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	391
BtgZI	GCGATG	2 cut(s)	61, 499
BtsCI	GGATG	1 cut(s)	552
BtsIMutI	CAGTG	4 cut(s)	46, 329, 580, 628
Cac8I	GCNNGC	1 cut(s)	103
CaiI	CAGNNNCTG	1 cut(s)	485
Cfr10I	RCCGGY	1 cut(s)	404
Cfr13I	GGNCC	5 cut(s)	154, 510, 566, 608, 659
Csp6I	GTAC	1 cut(s)	383
CviAII	CATG	2 cut(s)	433, 586
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	3 cut(s)	69, 321, 400
DpnI	GATC	6 cut(s)	11, 440, 489, 502, 647, 743
DpnII	GATC	6 cut(s)	9, 438, 487, 500, 645, 741
Eam1104I	CTCTTC	2 cut(s)	90, 95
EarI	CTCTTC	2 cut(s)	90, 95
EciI	GGCGGA	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	403
Eco47I	GGWCC	5 cut(s)	154, 510, 566, 608, 659
Eco91I	GGTNACC	1 cut(s)	239
EcoO65I	GGTNACC	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	2 cut(s)	436, 589
FaiI	YATR	5 cut(s)	287, 434, 539, 587, 720
FaqI	GGGAC	4 cut(s)	523, 619, 672, 699
FatI	CATG	2 cut(s)	432, 585
FauI	CCCGC	1 cut(s)	676
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	3 cut(s)	222, 483, 561
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	3 cut(s)	222, 483, 561
FspBI	CTAG	2 cut(s)	410, 506
GluI	GCNGC	3 cut(s)	222, 483, 561
GsaI	CCCAGC	2 cut(s)	161, 254
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	405
Hin1II	CATG	2 cut(s)	436, 589
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	3 cut(s)	32, 259, 589
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	4 cut(s)	16, 233, 638, 710
Hpy166II	GTNNAC	3 cut(s)	463, 472, 677
Hpy188I	TCNGA	4 cut(s)	70, 142, 608, 746
Hpy188III	TCNNGA	1 cut(s)	643
Hpy8I	GTNNAC	3 cut(s)	463, 472, 677
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	1 cut(s)	416
HpyCH4III	ACNGT	2 cut(s)	469, 698
HpyCH4V	TGCA	3 cut(s)	179, 455, 677
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 524
HpyF3I	CTNAG	3 cut(s)	69, 321, 400
Hsp92II	CATG	2 cut(s)	436, 589
Kzo9I	GATC	6 cut(s)	9, 438, 487, 500, 645, 741
LmnI	GCTCC	5 cut(s)	146, 338, 413, 523, 587
Lsp1109I	GCAGC	2 cut(s)	494, 547
MaeI	CTAG	2 cut(s)	410, 506
MaeIII	GTNAC	5 cut(s)	239, 256, 364, 445, 626
MalI	GATC	6 cut(s)	11, 440, 489, 502, 647, 743
MbiI	CCGCTC	1 cut(s)	416
MboI	GATC	6 cut(s)	9, 438, 487, 500, 645, 741
MboII	GAAGA	5 cut(s)	19, 77, 82, 298, 341
MfeI	CAATTG	2 cut(s)	174, 180
MflI	RGATCY	2 cut(s)	645, 741
MhlI	GDGCHC	1 cut(s)	679
MluCI	AATT	2 cut(s)	174, 180
MluI	ACGCGT	1 cut(s)	189
MlyI	GAGTC	2 cut(s)	26, 253
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	3 cut(s)	148, 365, 566
MseI	TTAA	2 cut(s)	54, 246
MspA1I	CMGCKG	3 cut(s)	161, 485, 614
MspI	CCGG	1 cut(s)	405
MunI	CAATTG	2 cut(s)	174, 180
MvnI	CGCG	2 cut(s)	191, 683
MwoI	GCNNNNNNNGC	2 cut(s)	482, 524
NdeII	GATC	6 cut(s)	9, 438, 487, 500, 645, 741
NlaIII	CATG	2 cut(s)	436, 589
NlaIV	GGNNCC	7 cut(s)	148, 156, 334, 511, 547, 583, 660
NmuCI	GTSAC	4 cut(s)	239, 256, 445, 626
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	589
PflMI	CCANNNNNTGG	1 cut(s)	575
PkrI	GCNGC	3 cut(s)	223, 484, 562
PleI	GAGTC	2 cut(s)	26, 253
PpsI	GAGTC	2 cut(s)	26, 253
PspEI	GGTNACC	1 cut(s)	239
PspFI	CCCAGC	2 cut(s)	157, 250
PspN4I	GGNNCC	7 cut(s)	148, 156, 334, 511, 547, 583, 660
PspPI	GGNCC	5 cut(s)	154, 510, 566, 608, 659
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	2 cut(s)	645, 741
PvuII	CAGCTG	3 cut(s)	161, 485, 614
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
SaqAI	TTAA	2 cut(s)	54, 246
SatI	GCNGC	3 cut(s)	222, 483, 561
Sau3AI	GATC	6 cut(s)	9, 438, 487, 500, 645, 741
Sau96I	GGNCC	5 cut(s)	154, 510, 566, 608, 659
SchI	GAGTC	2 cut(s)	26, 253
SduI	GDGCHC	1 cut(s)	679
SinI	GGWCC	5 cut(s)	154, 510, 566, 608, 659
Sse9I	AATT	2 cut(s)	174, 180
SsiI	CCGC	5 cut(s)	221, 279, 416, 683, 725
SspMI	CTAG	2 cut(s)	410, 506
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	469, 698
TaqI	TCGA	2 cut(s)	12, 420
TasI	AATT	2 cut(s)	174, 180
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	589
Tru1I	TTAA	2 cut(s)	54, 246
Tru9I	TTAA	2 cut(s)	54, 246
TscAI	CASTG	4 cut(s)	46, 329, 580, 628
TseFI	GTSAC	4 cut(s)	239, 256, 445, 626
TseI	GCWGC	2 cut(s)	482, 560
Tsp45I	GTSAC	4 cut(s)	239, 256, 445, 626
TspDTI	ATGAA	5 cut(s)	64, 526, 602, 697, 735
TspRI	CASTG	4 cut(s)	46, 329, 580, 628
Van91I	CCANNNNNTGG	1 cut(s)	575
VneI	GTGCAC	1 cut(s)	675
VpaK11BI	GGWCC	5 cut(s)	154, 510, 566, 608, 659
XmiI	GTMKAC	1 cut(s)	462
XspI	CTAG	2 cut(s)	410, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.