Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0015008

Physical Location & Seq

Genomic Coordinates Reverse (-)

8606047 .. 8607837

Gene Structure 1791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1056900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGTGAAGCTAGCTTTTGGTAGCTTTGGTGACTCTTTTAGTGTTGGCTCCCTCAAGGCTTACATAGCTGAGTTCATTGCCACCCTTGTTTTTGTGTTTGCTGGTGTTGGATCCGCAGTTGCTTACGGTAAGCTCACAGATGCATCCTTGGATCCTACGGGGCTAGTAGCGATTGCCGTGGCCCATGCATTTGCGCTGTTTGTGGGGGTTTCCATCGCTGCAAACATCTCAGGTGGCCATTTGAATCCAGCTGTCACATTTGGATTGGCCATCGGAGGCAACATCACCATCCTCACTGGCATTTTCTATTGGATTGCCCAACTCTTGGGCTCCATCGTTGCGAGCTTTCTCGTCAAGTTTGTCACTCAATTGGATGTTCCAACCCATGCACTCGGTGCAGGAGTAGGTGCTATTGAAGGTGTGGTTTTTGAGATCATCATAACCTTTGCTCTCGTCTACACAGTCTATGCTACAGCTGCAGACCCCAAGAAGGGTTCACTGGGAACCATAGCGCCCATAGCAATCGGCTTCATTGTTGGCGCCAACATTCTTGCCGCTGGTCCTTTTAGTGGGGGCTCAATGAACCCGGCCCGATCGTTCGGCCCAGCTGTGGCCAGCGGCAGCTATTCAGATATTTGGATCTATTGGGTCGGGCCACTTATTGGTGGTGGACTTGCCGGGCTGGTCTATGGTGACATTTTCATTGCCTCCTATGCCCCAGTCCCACAATCTGAGGACTATGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005275 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006833 GO:0008150 GO:0008324 GO:0008519 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015101 GO:0015200 GO:0015250 GO:0015267 GO:0015318 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0032586 GO:0034220 GO:0042044 GO:0042807 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0072489 GO:0098588 GO:0098655 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

249

Amino Acids

25.11

Weight (kDa)

4.86

Isoelectric Point (pI)

28.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	14 - 230	6.8e-78	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17340 AT5G47450
fragaria_vesca	FvH4_5g19110
malus_domestica	MD06G1056900.v1.1
prunus_persica	Prupe.5G067600_v2.0.a1
pyrus_communis	pycom06g04750
rosa_chinensis	RchiOBHm_Chr7g0203581
rosa_laevigata	RLG00000003516
rosa_multiflora	Rmu_sc0010675.1_g000005
rosa_roxburghii	Rroxscaffold_3G00253660
rosa_rugosa	Rorug07G0077200
rosa_samantha	Rh7AG206900 Rh7BG206400 Rh7CG219500 Rh7DG214100
rosa_wichuraiana	Rw7G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	539
AccB7I	CCANNNNNTGG	2 cut(s)	325, 662
AccI	GTMKAC	1 cut(s)	456
AciI	CCGC	3 cut(s)	114, 555, 618
AclWI	GGATC	5 cut(s)	105, 118, 146, 159, 647
AcoI	YGGCCR	3 cut(s)	235, 267, 612
AcyI	GRCGYC	1 cut(s)	540
AdeI	CACNNNGTG	1 cut(s)	395
AfiI	CCNNNNNNNGG	6 cut(s)	325, 490, 491, 569, 610, 662
AgsI	TTSAA	2 cut(s)	244, 416
AlwI	GGATC	5 cut(s)	105, 118, 146, 159, 647
AoxI	GGCC	7 cut(s)	180, 235, 267, 588, 601, 612, 653
ApeKI	GCWGC	3 cut(s)	218, 476, 621
AspLEI	GCGC	3 cut(s)	196, 514, 542
AspS9I	GGNCC	5 cut(s)	181, 560, 589, 602, 653
AsuC2I	CCSGG	2 cut(s)	587, 679
AsuHPI	GGTGA	4 cut(s)	16, 41, 277, 704
AsuNHI	GCTAGC	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	560
BalI	TGGCCA	3 cut(s)	237, 269, 614
BamHI	GGATCC	2 cut(s)	110, 151
BanI	GGYRCC	1 cut(s)	539
BanII	GRGCYC	2 cut(s)	332, 578
BbvI	GCAGC	3 cut(s)	205, 463, 633
BccI	CCATC	4 cut(s)	221, 278, 296, 341
BceAI	ACGGC	1 cut(s)	161
BcnI	CCSGG	2 cut(s)	587, 679
BfaI	CTAG	2 cut(s)	11, 164
BfmI	CTRYAG	2 cut(s)	471, 477
BfoI	RGCGCY	2 cut(s)	515, 543
BisI	GCNGC	5 cut(s)	219, 477, 555, 619, 622
BlsI	GCNGC	5 cut(s)	220, 478, 556, 620, 623
Bme1390I	CCNGG	2 cut(s)	587, 679
Bme18I	GGWCC	1 cut(s)	560
BmgT120I	GGNCC	5 cut(s)	181, 560, 589, 602, 653
BmiI	GGNNCC	6 cut(s)	49, 112, 153, 331, 505, 541
BmrFI	CCNGG	2 cut(s)	587, 679
BmrI	ACTGGG	2 cut(s)	509, 713
BmsI	GCATC	2 cut(s)	130, 152
BmtI	GCTAGC	1 cut(s)	14
BmuI	ACTGGG	2 cut(s)	509, 713
BpuEI	CTTGAG	1 cut(s)	38
BpuMI	CCSGG	2 cut(s)	587, 679
BsaHI	GRCGYC	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	6 cut(s)	325, 490, 491, 569, 610, 662
Bse1I	ACTGG	3 cut(s)	301, 504, 719
Bse3DI	GCAATG	2 cut(s)	75, 702
BseDI	CCNNGG	2 cut(s)	147, 177
BseGI	GGATG	3 cut(s)	143, 288, 379
BseLI	CCNNNNNNNGG	6 cut(s)	325, 490, 491, 569, 610, 662
BseMI	GCAATG	2 cut(s)	75, 702
BseMII	CTCAG	3 cut(s)	60, 243, 723
BseNI	ACTGG	3 cut(s)	301, 504, 719
BseXI	GCAGC	3 cut(s)	205, 463, 633
BseYI	CCCAGC	1 cut(s)	604
BsgI	GTGCAG	1 cut(s)	417
Bsh1285I	CGRYCG	1 cut(s)	596
BshFI	GGCC	7 cut(s)	182, 237, 269, 590, 603, 614, 655
BshNI	GGYRCC	1 cut(s)	539
BsiEI	CGRYCG	1 cut(s)	596
BsiSI	CCGG	2 cut(s)	587, 678
BslFI	GGGAC	1 cut(s)	707
BslI	CCNNNNNNNGG	6 cut(s)	325, 490, 491, 569, 610, 662
BsmFI	GGGAC	1 cut(s)	707
BsnI	GGCC	7 cut(s)	182, 237, 269, 590, 603, 614, 655
Bsp1286I	GDGCHC	2 cut(s)	332, 578
Bsp143I	GATC	5 cut(s)	110, 151, 432, 593, 639
BspACI	CCGC	3 cut(s)	114, 555, 618
BspANI	GGCC	7 cut(s)	182, 237, 269, 590, 603, 614, 655
BspCNI	CTCAG	3 cut(s)	61, 242, 724
BspLI	GGNNCC	6 cut(s)	49, 112, 153, 331, 505, 541
BspMAI	CTGCAG	1 cut(s)	481
BspOI	GCTAGC	1 cut(s)	14
BspPI	GGATC	5 cut(s)	105, 118, 146, 159, 647
BspT107I	GGYRCC	1 cut(s)	539
BsrDI	GCAATG	2 cut(s)	75, 702
BsrI	ACTGG	3 cut(s)	301, 504, 719
BssECI	CCNNGG	2 cut(s)	147, 177
BssMI	GATC	5 cut(s)	110, 151, 432, 593, 639
BssNI	GRCGYC	1 cut(s)	540
BssT1I	CCWWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	128, 463
BstACI	GRCGYC	1 cut(s)	540
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstC8I	GCNNGC	3 cut(s)	12, 343, 616
BstDEI	CTNAG	3 cut(s)	69, 229, 732
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	3 cut(s)	143, 288, 379
BstH2I	RGCGCY	2 cut(s)	515, 543
BstHHI	GCGC	3 cut(s)	196, 514, 542
BstKTI	GATC	5 cut(s)	113, 154, 435, 596, 642
BstMBI	GATC	5 cut(s)	110, 151, 432, 593, 639
BstMCI	CGRYCG	1 cut(s)	596
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 395, 476, 518, 713
BstSCI	CCNGG	2 cut(s)	585, 677
BstSFI	CTRYAG	2 cut(s)	471, 477
BstV1I	GCAGC	3 cut(s)	205, 463, 633
BstX2I	RGATCY	3 cut(s)	110, 151, 639
BstYI	RGATCY	3 cut(s)	110, 151, 639
BsuRI	GGCC	7 cut(s)	182, 237, 269, 590, 603, 614, 655
BtgI	CCRYGG	1 cut(s)	177
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	3 cut(s)	143, 288, 379
BtsIMutI	CAGTG	2 cut(s)	294, 497
Cac8I	GCNNGC	3 cut(s)	12, 343, 616
CfoI	GCGC	3 cut(s)	196, 514, 542
Cfr13I	GGNCC	5 cut(s)	181, 560, 589, 602, 653
CviAII	CATG	2 cut(s)	185, 386
DdeI	CTNAG	3 cut(s)	69, 229, 732
DinI	GGCGCC	1 cut(s)	541
DpnI	GATC	5 cut(s)	112, 153, 434, 595, 641
DpnII	GATC	5 cut(s)	110, 151, 432, 593, 639
DraIII	CACNNNGTG	1 cut(s)	395
EaeI	YGGCCR	3 cut(s)	235, 267, 612
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	2 cut(s)	332, 578
Eco47I	GGWCC	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	147
EcoT22I	ATGCAT	2 cut(s)	145, 190
EcoT38I	GRGCYC	2 cut(s)	332, 578
EgeI	GGCGCC	1 cut(s)	541
EheI	GGCGCC	1 cut(s)	541
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	2 cut(s)	188, 389
FaqI	GGGAC	1 cut(s)	707
FatI	CATG	2 cut(s)	184, 385
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	5 cut(s)	219, 477, 555, 619, 622
FokI	GGATG	3 cut(s)	130, 275, 386
FriOI	GRGCYC	2 cut(s)	332, 578
Fsp4HI	GCNGC	5 cut(s)	219, 477, 555, 619, 622
FspBI	CTAG	2 cut(s)	11, 164
GlaI	GCGC	3 cut(s)	195, 513, 541
GluI	GCNGC	5 cut(s)	219, 477, 555, 619, 622
GsaI	CCCAGC	1 cut(s)	608
HaeII	RGCGCY	2 cut(s)	515, 543
HaeIII	GGCC	7 cut(s)	182, 237, 269, 590, 603, 614, 655
HapII	CCGG	2 cut(s)	587, 678
HhaI	GCGC	3 cut(s)	196, 514, 542
Hin1I	GRCGYC	1 cut(s)	540
Hin1II	CATG	2 cut(s)	188, 389
Hin6I	GCGC	3 cut(s)	194, 512, 540
HinP1I	GCGC	3 cut(s)	194, 512, 540
HinfI	GANTC	2 cut(s)	32, 244
HpaII	CCGG	2 cut(s)	587, 678
HphI	GGTGA	4 cut(s)	16, 41, 277, 704
Hpy166II	GTNNAC	3 cut(s)	457, 497, 671
Hpy188I	TCNGA	3 cut(s)	275, 631, 733
Hpy8I	GTNNAC	3 cut(s)	457, 497, 671
HpyAV	CCTTC	2 cut(s)	410, 484
HpyCH4III	ACNGT	2 cut(s)	128, 463
HpyCH4V	TGCA	6 cut(s)	143, 188, 221, 389, 398, 479
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 395, 476, 518, 713
HpyF3I	CTNAG	3 cut(s)	69, 229, 732
Hsp92I	GRCGYC	1 cut(s)	540
Hsp92II	CATG	2 cut(s)	188, 389
HspAI	GCGC	3 cut(s)	194, 512, 540
KasI	GGCGCC	1 cut(s)	539
Kzo9I	GATC	5 cut(s)	110, 151, 432, 593, 639
LmnI	GCTCC	2 cut(s)	53, 335
Lsp1109I	GCAGC	3 cut(s)	205, 463, 633
LweI	GCATC	2 cut(s)	130, 152
MaeI	CTAG	2 cut(s)	11, 164
MaeIII	GTNAC	4 cut(s)	29, 253, 361, 692
MalI	GATC	5 cut(s)	112, 153, 434, 595, 641
MboI	GATC	5 cut(s)	110, 151, 432, 593, 639
MfeI	CAATTG	1 cut(s)	368
MflI	RGATCY	3 cut(s)	110, 151, 639
MhlI	GDGCHC	2 cut(s)	332, 578
MlsI	TGGCCA	3 cut(s)	237, 269, 614
MluCI	AATT	1 cut(s)	368
MluNI	TGGCCA	3 cut(s)	237, 269, 614
Mly113I	GGCGCC	1 cut(s)	540
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	2 cut(s)	88, 404
MnlI	CCTC	5 cut(s)	62, 269, 302, 718, 727
Mox20I	TGGCCA	3 cut(s)	237, 269, 614
Mph1103I	ATGCAT	2 cut(s)	145, 190
MscI	TGGCCA	3 cut(s)	237, 269, 614
Msp20I	TGGCCA	3 cut(s)	237, 269, 614
MspA1I	CMGCKG	5 cut(s)	251, 476, 557, 608, 618
MspI	CCGG	2 cut(s)	587, 678
MspR9I	CCNGG	2 cut(s)	587, 679
MunI	CAATTG	1 cut(s)	368
MwoI	GCNNNNNNNGC	5 cut(s)	65, 395, 476, 518, 713
NarI	GGCGCC	1 cut(s)	540
NciI	CCSGG	2 cut(s)	587, 679
NdeII	GATC	5 cut(s)	110, 151, 432, 593, 639
NheI	GCTAGC	1 cut(s)	10
NlaIII	CATG	2 cut(s)	188, 389
NlaIV	GGNNCC	6 cut(s)	49, 112, 153, 331, 505, 541
NmuCI	GTSAC	4 cut(s)	29, 253, 361, 692
NsiI	ATGCAT	2 cut(s)	145, 190
PfeI	GAWTC	1 cut(s)	244
PflMI	CCANNNNNTGG	2 cut(s)	325, 662
PkrI	GCNGC	5 cut(s)	220, 478, 556, 620, 623
Ple19I	CGATCG	1 cut(s)	596
PleI	GAGTC	1 cut(s)	26
PluTI	GGCGCC	1 cut(s)	543
PpsI	GAGTC	1 cut(s)	26
PspFI	CCCAGC	1 cut(s)	604
PspN4I	GGNNCC	6 cut(s)	49, 112, 153, 331, 505, 541
PspPI	GGNCC	5 cut(s)	181, 560, 589, 602, 653
PstI	CTGCAG	1 cut(s)	481
PsuI	RGATCY	3 cut(s)	110, 151, 639
PvuI	CGATCG	1 cut(s)	596
PvuII	CAGCTG	3 cut(s)	251, 476, 608
SatI	GCNGC	5 cut(s)	219, 477, 555, 619, 622
Sau3AI	GATC	5 cut(s)	110, 151, 432, 593, 639
Sau96I	GGNCC	5 cut(s)	181, 560, 589, 602, 653
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	587, 679
SduI	GDGCHC	2 cut(s)	332, 578
SfaNI	GCATC	2 cut(s)	130, 152
SfcI	CTRYAG	2 cut(s)	471, 477
SfoI	GGCGCC	1 cut(s)	541
SinI	GGWCC	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	368
SsiI	CCGC	3 cut(s)	114, 555, 618
SspDI	GGCGCC	1 cut(s)	539
SspMI	CTAG	2 cut(s)	11, 164
StyD4I	CCNGG	2 cut(s)	585, 677
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	128, 463
TasI	AATT	1 cut(s)	368
TauI	GCSGC	2 cut(s)	557, 621
TfiI	GAWTC	1 cut(s)	244
TscAI	CASTG	2 cut(s)	301, 504
TseFI	GTSAC	4 cut(s)	29, 253, 361, 692
TseI	GCWGC	3 cut(s)	218, 476, 621
Tsp45I	GTSAC	4 cut(s)	29, 253, 361, 692
TspDTI	ATGAA	4 cut(s)	64, 520, 596, 691
TspRI	CASTG	2 cut(s)	301, 504
Van91I	CCANNNNNTGG	2 cut(s)	325, 662
VpaK11BI	GGWCC	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	456
XspI	CTAG	2 cut(s)	11, 164
Zsp2I	ATGCAT	2 cut(s)	145, 190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.