Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0015008

Physical Location & Seq

Genomic Coordinates Reverse (-)

6316230 .. 6317315

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g04750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCACGGGCTATGGTTATAAAGTGTAATTACTTGATTAACTATTTCATAATTAAAGTGTTTAATTTCAAGCCAATTAAATTATTTTTTTATGTGTATGCAGGTAAGCTCACAGATGCATCCTTGGATCCTGCGGGGCTAGTAGCGATTGCCGTGGCCCATGCATTTGCGCTGTTTGTGGGGGTTTCCATCGCTGCAAACATCTCAGGTGGCCATTTGAATCCAGCTGTTACATTTGGATTGGCCATCGGAGGCAACATCACCATCCTCACTGGCATTTTCTATTGGATTGCCCAACTCTTGGGCTCCATCGTTGCTAGCTTTCTCGTCAAGTTTGTTACTCAATTGAACGTGGTTCTTATTTGTCTTTGTATTTGGCAGGATGTTCCAACCCATGCACTCGGTGCAGGAGTAGGTGCTATTGAAGGTGTGGTGTTTGAGATCATCATAACCTTTGGTCTCGTCTACACGGTCTATGCTACAGCTGCAGACCCCAAGAAGGGTTCACTGGGAACCATAGCGCCCATAGCGATCGGCTTCATTGTTGGCGCTAACATTCTCGCTGCTGGCCCCTTCAGCGGGGGCTCAATGAATCCGGCCCGATCGTTCGGCCCAGCAGTGGCCAGCGGCAGCTATTCAAATATTTGGATCTACTGGGTCGGGCCACTTATTGGTGGTGGGCTTGCCGGGCTAGTCTATGGTGACATTTTCATTGCGTCCTATGCCCCAGTCCCACAATCTGAGGACTATGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005275 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006833 GO:0008150 GO:0008324 GO:0008519 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015101 GO:0015200 GO:0015250 GO:0015267 GO:0015318 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0032586 GO:0034220 GO:0042044 GO:0042807 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0072489 GO:0098588 GO:0098655 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

252

Amino Acids

26.19

Weight (kDa)

7.68

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	36 - 233	1.1e-66	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17340 AT5G47450
fragaria_vesca	FvH4_5g19110
malus_domestica	MD06G1056900.v1.1
prunus_persica	Prupe.5G067600_v2.0.a1
pyrus_communis	pycom06g04750
rosa_chinensis	RchiOBHm_Chr7g0203581
rosa_laevigata	RLG00000003516
rosa_multiflora	Rmu_sc0010675.1_g000005
rosa_roxburghii	Rroxscaffold_3G00253660
rosa_rugosa	Rorug07G0077200
rosa_samantha	Rh7AG206900 Rh7BG206400 Rh7CG219500 Rh7DG214100
rosa_wichuraiana	Rw7G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	20
Acc36I	ACCTGC	1 cut(s)	92
AccB7I	CCANNNNNTGG	2 cut(s)	301, 671
AccI	GTMKAC	1 cut(s)	465
AciI	CCGC	3 cut(s)	134, 579, 627
AclWI	GGATC	3 cut(s)	122, 135, 656
AcoI	YGGCCR	3 cut(s)	211, 243, 621
AcuI	CTGAAG	1 cut(s)	559
AdeI	CACNNNGTG	1 cut(s)	404
AfiI	CCNNNNNNNGG	7 cut(s)	301, 499, 500, 578, 579, 619, 671
AgsI	TTSAA	5 cut(s)	70, 220, 349, 425, 639
AluBI	AGCT	5 cut(s)	109, 227, 321, 485, 633
AluI	AGCT	5 cut(s)	109, 227, 321, 485, 633
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	3 cut(s)	122, 135, 656
AoxI	GGCC	8 cut(s)	156, 211, 243, 568, 597, 610, 621, 662
ApeKI	GCWGC	4 cut(s)	194, 485, 563, 630
AspLEI	GCGC	3 cut(s)	172, 523, 551
AspS9I	GGNCC	5 cut(s)	157, 569, 598, 611, 662
AsuC2I	CCSGG	1 cut(s)	688
AsuHPI	GGTGA	2 cut(s)	253, 713
AsuNHI	GCTAGC	1 cut(s)	317
BalI	TGGCCA	3 cut(s)	213, 245, 623
BamHI	GGATCC	1 cut(s)	127
BanII	GRGCYC	2 cut(s)	308, 587
BbvI	GCAGC	4 cut(s)	181, 472, 550, 642
BccI	CCATC	4 cut(s)	197, 254, 272, 317
BceAI	ACGGC	1 cut(s)	137
BcnI	CCSGG	1 cut(s)	688
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	3 cut(s)	140, 318, 692
BfmI	CTRYAG	2 cut(s)	480, 486
BfoI	RGCGCY	2 cut(s)	524, 552
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	5 cut(s)	195, 486, 564, 628, 631
BlsI	GCNGC	5 cut(s)	196, 487, 565, 629, 632
Bme1390I	CCNGG	1 cut(s)	688
BmgT120I	GGNCC	5 cut(s)	157, 569, 598, 611, 662
BmiI	GGNNCC	4 cut(s)	129, 307, 514, 571
BmrFI	CCNGG	1 cut(s)	688
BmrI	ACTGGG	3 cut(s)	518, 664, 722
BmsI	GCATC	2 cut(s)	106, 128
BmtI	GCTAGC	1 cut(s)	321
BmuI	ACTGGG	3 cut(s)	518, 664, 722
BpuMI	CCSGG	1 cut(s)	688
BsaI	GGTCTC	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	7 cut(s)	301, 499, 500, 578, 579, 619, 671
Bse1I	ACTGG	4 cut(s)	277, 513, 659, 728
Bse3DI	GCAATG	1 cut(s)	711
BseDI	CCNNGG	2 cut(s)	123, 153
BseGI	GGATG	3 cut(s)	119, 264, 388
BseLI	CCNNNNNNNGG	7 cut(s)	301, 499, 500, 578, 579, 619, 671
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	2 cut(s)	219, 732
BseNI	ACTGG	4 cut(s)	277, 513, 659, 728
BseXI	GCAGC	4 cut(s)	181, 472, 550, 642
BseYI	CCCAGC	1 cut(s)	613
BsgI	GTGCAG	1 cut(s)	426
Bsh1285I	CGRYCG	2 cut(s)	534, 605
BshFI	GGCC	8 cut(s)	158, 213, 245, 570, 599, 612, 623, 664
BsiEI	CGRYCG	2 cut(s)	534, 605
BsiSI	CCGG	2 cut(s)	596, 687
BslFI	GGGAC	1 cut(s)	716
BslI	CCNNNNNNNGG	7 cut(s)	301, 499, 500, 578, 579, 619, 671
BsmAI	GTCTC	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	716
BsnI	GGCC	8 cut(s)	158, 213, 245, 570, 599, 612, 623, 664
Bso31I	GGTCTC	1 cut(s)	464
Bsp1286I	GDGCHC	2 cut(s)	308, 587
Bsp143I	GATC	5 cut(s)	127, 441, 531, 602, 648
BspACI	CCGC	3 cut(s)	134, 579, 627
BspANI	GGCC	8 cut(s)	158, 213, 245, 570, 599, 612, 623, 664
BspCNI	CTCAG	2 cut(s)	218, 733
BspLI	GGNNCC	4 cut(s)	129, 307, 514, 571
BspMAI	CTGCAG	1 cut(s)	490
BspMI	ACCTGC	1 cut(s)	92
BspOI	GCTAGC	1 cut(s)	321
BspPI	GGATC	3 cut(s)	122, 135, 656
BspTNI	GGTCTC	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	711
BsrI	ACTGG	4 cut(s)	277, 513, 659, 728
BssECI	CCNNGG	2 cut(s)	123, 153
BssMI	GATC	5 cut(s)	127, 441, 531, 602, 648
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	472
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	4 cut(s)	319, 568, 625, 684
BstDEI	CTNAG	2 cut(s)	205, 741
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	119, 264, 388
BstH2I	RGCGCY	2 cut(s)	524, 552
BstHHI	GCGC	3 cut(s)	172, 523, 551
BstKTI	GATC	5 cut(s)	130, 444, 534, 605, 651
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	5 cut(s)	127, 441, 531, 602, 648
BstMCI	CGRYCG	2 cut(s)	534, 605
BstMWI	GCNNNNNNNGC	6 cut(s)	404, 485, 527, 576, 688, 722
BstSCI	CCNGG	1 cut(s)	686
BstSFI	CTRYAG	2 cut(s)	480, 486
BstV1I	GCAGC	4 cut(s)	181, 472, 550, 642
BstX2I	RGATCY	2 cut(s)	127, 648
BstYI	RGATCY	2 cut(s)	127, 648
BsuRI	GGCC	8 cut(s)	158, 213, 245, 570, 599, 612, 623, 664
BtgI	CCRYGG	1 cut(s)	153
BtgZI	GCGATG	1 cut(s)	175
BtsCI	GGATG	3 cut(s)	119, 264, 388
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	3 cut(s)	270, 506, 624
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	4 cut(s)	319, 568, 625, 684
CfoI	GCGC	3 cut(s)	172, 523, 551
Cfr13I	GGNCC	5 cut(s)	157, 569, 598, 611, 662
CseI	GACGC	1 cut(s)	705
CviAII	CATG	2 cut(s)	161, 395
DdeI	CTNAG	2 cut(s)	205, 741
DpnI	GATC	5 cut(s)	129, 443, 533, 604, 650
DpnII	GATC	5 cut(s)	127, 441, 531, 602, 648
DraIII	CACNNNGTG	1 cut(s)	404
EaeI	YGGCCR	3 cut(s)	211, 243, 621
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	2 cut(s)	308, 587
Eco31I	GGTCTC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	559
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	2 cut(s)	121, 166
EcoT38I	GRGCYC	2 cut(s)	308, 587
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	2 cut(s)	164, 398
FaqI	GGGAC	1 cut(s)	716
FatI	CATG	2 cut(s)	160, 394
FauI	CCCGC	2 cut(s)	127, 572
FblI	GTMKAC	1 cut(s)	465
Fnu4HI	GCNGC	5 cut(s)	195, 486, 564, 628, 631
FokI	GGATG	3 cut(s)	106, 251, 395
FriOI	GRGCYC	2 cut(s)	308, 587
Fsp4HI	GCNGC	5 cut(s)	195, 486, 564, 628, 631
FspBI	CTAG	3 cut(s)	140, 318, 692
GlaI	GCGC	3 cut(s)	171, 522, 550
GluI	GCNGC	5 cut(s)	195, 486, 564, 628, 631
GsaI	CCCAGC	1 cut(s)	617
HaeII	RGCGCY	2 cut(s)	524, 552
HaeIII	GGCC	8 cut(s)	158, 213, 245, 570, 599, 612, 623, 664
HapII	CCGG	2 cut(s)	596, 687
HgaI	GACGC	1 cut(s)	705
HhaI	GCGC	3 cut(s)	172, 523, 551
Hin1II	CATG	2 cut(s)	164, 398
Hin6I	GCGC	3 cut(s)	170, 521, 549
HinP1I	GCGC	3 cut(s)	170, 521, 549
HinfI	GANTC	2 cut(s)	220, 592
HpaII	CCGG	2 cut(s)	596, 687
HphI	GGTGA	2 cut(s)	253, 713
Hpy166II	GTNNAC	2 cut(s)	466, 506
Hpy188I	TCNGA	2 cut(s)	251, 742
Hpy8I	GTNNAC	2 cut(s)	466, 506
HpyAV	CCTTC	3 cut(s)	419, 493, 583
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	7 cut(s)	101, 119, 164, 197, 398, 407, 488
HpyF10VI	GCNNNNNNNGC	6 cut(s)	404, 485, 527, 576, 688, 722
HpyF3I	CTNAG	2 cut(s)	205, 741
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	164, 398
HspAI	GCGC	3 cut(s)	170, 521, 549
Kzo9I	GATC	5 cut(s)	127, 441, 531, 602, 648
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	4 cut(s)	181, 472, 550, 642
LweI	GCATC	2 cut(s)	106, 128
MaeI	CTAG	3 cut(s)	140, 318, 692
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	3 cut(s)	229, 337, 701
MalI	GATC	5 cut(s)	129, 443, 533, 604, 650
MboI	GATC	5 cut(s)	127, 441, 531, 602, 648
MfeI	CAATTG	1 cut(s)	344
MflI	RGATCY	2 cut(s)	127, 648
MhlI	GDGCHC	2 cut(s)	308, 587
MlsI	TGGCCA	3 cut(s)	213, 245, 623
MluCI	AATT	6 cut(s)	28, 51, 64, 75, 80, 344
MluNI	TGGCCA	3 cut(s)	213, 245, 623
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	3 cut(s)	245, 278, 736
Mox20I	TGGCCA	3 cut(s)	213, 245, 623
Mph1103I	ATGCAT	2 cut(s)	121, 166
MscI	TGGCCA	3 cut(s)	213, 245, 623
MseI	TTAA	4 cut(s)	39, 54, 63, 78
Msp20I	TGGCCA	3 cut(s)	213, 245, 623
MspA1I	CMGCKG	4 cut(s)	227, 485, 579, 627
MspI	CCGG	2 cut(s)	596, 687
MspR9I	CCNGG	1 cut(s)	688
MunI	CAATTG	1 cut(s)	344
MwoI	GCNNNNNNNGC	6 cut(s)	404, 485, 527, 576, 688, 722
NciI	CCSGG	1 cut(s)	688
NdeII	GATC	5 cut(s)	127, 441, 531, 602, 648
NheI	GCTAGC	1 cut(s)	317
NlaIII	CATG	2 cut(s)	164, 398
NlaIV	GGNNCC	4 cut(s)	129, 307, 514, 571
NmuCI	GTSAC	1 cut(s)	701
NsiI	ATGCAT	2 cut(s)	121, 166
PfeI	GAWTC	2 cut(s)	220, 592
PflMI	CCANNNNNTGG	2 cut(s)	301, 671
PkrI	GCNGC	5 cut(s)	196, 487, 565, 629, 632
Ple19I	CGATCG	2 cut(s)	534, 605
PsiI	TTATAA	1 cut(s)	20
PspFI	CCCAGC	1 cut(s)	613
PspN4I	GGNNCC	4 cut(s)	129, 307, 514, 571
PspPI	GGNCC	5 cut(s)	157, 569, 598, 611, 662
PstI	CTGCAG	1 cut(s)	490
PsuI	RGATCY	2 cut(s)	127, 648
PvuI	CGATCG	2 cut(s)	534, 605
PvuII	CAGCTG	2 cut(s)	227, 485
SaqAI	TTAA	4 cut(s)	39, 54, 63, 78
SatI	GCNGC	5 cut(s)	195, 486, 564, 628, 631
Sau3AI	GATC	5 cut(s)	127, 441, 531, 602, 648
Sau96I	GGNCC	5 cut(s)	157, 569, 598, 611, 662
ScrFI	CCNGG	1 cut(s)	688
SduI	GDGCHC	2 cut(s)	308, 587
SfaNI	GCATC	2 cut(s)	106, 128
SfcI	CTRYAG	2 cut(s)	480, 486
Sse9I	AATT	6 cut(s)	28, 51, 64, 75, 80, 344
SsiI	CCGC	3 cut(s)	134, 579, 627
SspI	AATATT	1 cut(s)	643
SspMI	CTAG	3 cut(s)	140, 318, 692
StyD4I	CCNGG	1 cut(s)	686
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	472
TaiI	ACGT	1 cut(s)	354
TasI	AATT	6 cut(s)	28, 51, 64, 75, 80, 344
TauI	GCSGC	1 cut(s)	630
TfiI	GAWTC	2 cut(s)	220, 592
Tru1I	TTAA	4 cut(s)	39, 54, 63, 78
Tru9I	TTAA	4 cut(s)	39, 54, 63, 78
TscAI	CASTG	3 cut(s)	277, 513, 624
TseFI	GTSAC	1 cut(s)	701
TseI	GCWGC	4 cut(s)	194, 485, 563, 630
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	4 cut(s)	37, 529, 605, 700
TspRI	CASTG	3 cut(s)	277, 513, 624
Van91I	CCANNNNNTGG	2 cut(s)	301, 671
XmiI	GTMKAC	1 cut(s)	465
XspI	CTAG	3 cut(s)	140, 318, 692
Zsp2I	ATGCAT	2 cut(s)	121, 166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.