Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0015008

Physical Location & Seq

Genomic Coordinates Forward (+)

18918517 .. 18923165

Gene Structure 4649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG206900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTGAAGATTATCAAGGCTGGTCTTATAAGCGCTTATATCATAAAAACACTCTACTTTGGAAGGCATTCTACAGATCGTGAAGTTGCTCTCATGATGCTTATGGCTTATTTGTCATACATGTTGGCTGAGATTGCGTTTGGTAGCTTTGGTGACTCTTTCAGTATTGGCTCCCTCAAGTCCTACCTAGCCGAGTTCATCGCCACCCTTCTTTTCGTGTTTGCTGGCGTTGGCTCTGCCCTCGCTTATGATAAGCTGACTACAGATGCAGCTTTAGACCCTGCCGGCCTAGTCGCGGTGGCCGTGGCCCATGCATTTGCTCTGTTTGTGGGGGTCTCCGTCGCTGCAAACATCTCCGGTGGCCATTTGAACCCAGCTGTCACTTTCGGATTGGCTGTTGGAGGCAACATTACCATCCTAACCGGCATTTTCTACTGGATTGCTCAACTCTTAGGCTCCATCGTCGCTTGCTTTCTCCTCAAGTTTGTCACCAGCGAGAGTGTGCCAACACATGGACTTGCCTCTGGTGTAGGAGCTATTGAAGGTGTTGTGTTTGAAATCATCATAACCTTTGGTCTGGTCTACACTGTCTATGCCACAGCCGCAGACCCCAAGAAGGGTTCACTTGGGATCATAGCACCCATTGCAATAGGGTTCATTGTTGGTGCCAACATCCTAGCGGCCGGACCATTCAGCGGGGGATCTATGAACCCAGCTCGCTCATTTGGCCCAGCCGTTGTCAGCGGAAACTTCGCCGATAACTGGATCTACTGGGTTGGTCCATTAGTTGGTGGAGGTTTGGCTGGCCTGGTCTATGGTGACATTTTCATTGGATCCTACTCCCCAGTTCCAGTTTCTGAAGATTATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005275 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006833 GO:0008150 GO:0008324 GO:0008519 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015101 GO:0015200 GO:0015250 GO:0015267 GO:0015318 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0032586 GO:0034220 GO:0042044 GO:0042807 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0072489 GO:0098588 GO:0098655 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

290

Amino Acids

29.89

Weight (kDa)

5.22

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	56 - 272	3.1e-80	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17340 AT5G47450
fragaria_vesca	FvH4_5g19110
malus_domestica	MD06G1056900.v1.1
prunus_persica	Prupe.5G067600_v2.0.a1
pyrus_communis	pycom06g04750
rosa_chinensis	RchiOBHm_Chr7g0203581
rosa_laevigata	RLG00000003516
rosa_multiflora	Rmu_sc0010675.1_g000005
rosa_roxburghii	Rroxscaffold_3G00253660
rosa_rugosa	Rorug07G0077200
rosa_samantha	Rh7AG206900 Rh7BG206400 Rh7CG219500 Rh7DG214100
rosa_wichuraiana	Rw7G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	29
AccB1I	GGYRCC	1 cut(s)	665
AccB7I	CCANNNNNTGG	2 cut(s)	512, 788
AccI	GTMKAC	1 cut(s)	582
AccII	CGCG	1 cut(s)	296
AciI	CCGC	5 cut(s)	296, 603, 680, 696, 744
AclWI	GGATC	5 cut(s)	638, 709, 773, 828, 841
AcoI	YGGCCR	3 cut(s)	300, 361, 681
AfeI	AGCGCT	1 cut(s)	34
AfiI	CCNNNNNNNGG	7 cut(s)	295, 512, 616, 617, 695, 762, 788
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	3 cut(s)	370, 542, 557
AjnI	CCWGG	1 cut(s)	807
AluBI	AGCT	6 cut(s)	147, 256, 272, 377, 536, 716
AluI	AGCT	6 cut(s)	147, 256, 272, 377, 536, 716
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	5 cut(s)	638, 709, 773, 828, 841
AlwNI	CAGNNNCTG	1 cut(s)	857
Aor51HI	AGCGCT	1 cut(s)	34
AoxI	GGCC	7 cut(s)	286, 300, 306, 361, 681, 727, 805
ApeKI	GCWGC	2 cut(s)	269, 344
Asp700I	GAANNNNTTC	1 cut(s)	67
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	4 cut(s)	307, 686, 728, 779
AsuHPI	GGTGA	4 cut(s)	16, 164, 481, 830
AvaII	GGWCC	2 cut(s)	686, 779
BalI	TGGCCA	1 cut(s)	363
BamHI	GGATCC	1 cut(s)	833
BanI	GGYRCC	1 cut(s)	665
BarI	GAAGNNNNNNTAC	2 cut(s)	55, 87
BbvI	GCAGC	2 cut(s)	281, 331
BccI	CCATC	2 cut(s)	422, 467
BceAI	ACGGC	2 cut(s)	287, 719
BciT130I	CCWGG	1 cut(s)	809
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	3 cut(s)	188, 290, 677
BfmI	CTRYAG	2 cut(s)	72, 261
BfoI	RGCGCY	1 cut(s)	36
BisI	GCNGC	4 cut(s)	270, 345, 603, 681
BlsI	GCNGC	4 cut(s)	271, 346, 604, 682
Bme1390I	CCNGG	1 cut(s)	809
Bme18I	GGWCC	2 cut(s)	686, 779
BmgT120I	GGNCC	4 cut(s)	307, 686, 728, 779
BmiI	GGNNCC	4 cut(s)	172, 457, 667, 835
BmrFI	CCNGG	1 cut(s)	809
BmrI	ACTGGG	2 cut(s)	781, 839
BmsI	GCATC	2 cut(s)	87, 256
BmuI	ACTGGG	2 cut(s)	781, 839
BpuEI	CTTGAG	2 cut(s)	161, 464
BsaI	GGTCTC	1 cut(s)	340
BsaJI	CCNNGG	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	7 cut(s)	295, 512, 616, 617, 695, 762, 788
Bse118I	RCCGGY	2 cut(s)	284, 422
Bse1I	ACTGG	5 cut(s)	440, 767, 776, 845, 851
Bse3DI	GCAATG	1 cut(s)	642
BseBI	CCWGG	1 cut(s)	809
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	2 cut(s)	414, 672
BseLI	CCNNNNNNNGG	7 cut(s)	295, 512, 616, 617, 695, 762, 788
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	5 cut(s)	440, 767, 776, 845, 851
BseRI	GAGGAG	1 cut(s)	467
BseX3I	CGGCCG	1 cut(s)	681
BseXI	GCAGC	2 cut(s)	281, 331
BseYI	CCCAGC	3 cut(s)	373, 712, 730
Bsh1236I	CGCG	1 cut(s)	296
Bsh1285I	CGRYCG	1 cut(s)	684
BshFI	GGCC	7 cut(s)	288, 302, 308, 363, 683, 729, 807
BshNI	GGYRCC	1 cut(s)	665
BsiEI	CGRYCG	1 cut(s)	684
BsiSI	CCGG	4 cut(s)	285, 357, 423, 684
BslI	CCNNNNNNNGG	7 cut(s)	295, 512, 616, 617, 695, 762, 788
BsmAI	GTCTC	1 cut(s)	340
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	7 cut(s)	288, 302, 308, 363, 683, 729, 807
Bso31I	GGTCTC	1 cut(s)	340
Bsp143I	GATC	5 cut(s)	76, 630, 701, 765, 833
BspACI	CCGC	5 cut(s)	296, 603, 680, 696, 744
BspANI	GGCC	7 cut(s)	288, 302, 308, 363, 683, 729, 807
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	296
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	4 cut(s)	172, 457, 667, 835
BspPI	GGATC	5 cut(s)	638, 709, 773, 828, 841
BspT107I	GGYRCC	1 cut(s)	665
BspTNI	GGTCTC	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	642
BsrFI	RCCGGY	2 cut(s)	284, 422
BsrI	ACTGG	5 cut(s)	440, 767, 776, 845, 851
BssAI	RCCGGY	2 cut(s)	284, 422
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	5 cut(s)	76, 630, 701, 765, 833
Bst2UI	CCWGG	1 cut(s)	809
Bst4CI	ACNGT	1 cut(s)	589
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	5 cut(s)	226, 286, 469, 718, 805
BstDEI	CTNAG	2 cut(s)	129, 451
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	2 cut(s)	414, 672
BstFNI	CGCG	1 cut(s)	296
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	5 cut(s)	79, 633, 704, 768, 836
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	5 cut(s)	76, 630, 701, 765, 833
BstMCI	CGRYCG	1 cut(s)	684
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 602, 644, 726
BstNI	CCWGG	1 cut(s)	809
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	807
BstSFI	CTRYAG	2 cut(s)	72, 261
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	2 cut(s)	281, 331
BstX2I	RGATCY	3 cut(s)	701, 765, 833
BstYI	RGATCY	3 cut(s)	701, 765, 833
BstZI	CGGCCG	1 cut(s)	681
BsuRI	GGCC	7 cut(s)	288, 302, 308, 363, 683, 729, 807
BtgI	CCRYGG	1 cut(s)	303
BtgZI	GCGATG	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	414, 672
BtsIMutI	CAGTG	1 cut(s)	585
Cac8I	GCNNGC	5 cut(s)	226, 286, 469, 718, 805
CaiI	CAGNNNCTG	1 cut(s)	857
CciI	TCATGA	1 cut(s)	93
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	2 cut(s)	284, 422
Cfr13I	GGNCC	4 cut(s)	307, 686, 728, 779
CviAII	CATG	4 cut(s)	94, 121, 311, 512
DdeI	CTNAG	2 cut(s)	129, 451
DpnI	GATC	5 cut(s)	78, 632, 703, 767, 835
DpnII	GATC	5 cut(s)	76, 630, 701, 765, 833
EaeI	YGGCCR	3 cut(s)	300, 361, 681
EagI	CGGCCG	1 cut(s)	681
EclXI	CGGCCG	1 cut(s)	681
Eco31I	GGTCTC	1 cut(s)	340
Eco47I	GGWCC	2 cut(s)	686, 779
Eco47III	AGCGCT	1 cut(s)	34
Eco52I	CGGCCG	1 cut(s)	681
EcoRII	CCWGG	1 cut(s)	807
EcoT22I	ATGCAT	1 cut(s)	316
FaeI	CATG	4 cut(s)	97, 124, 314, 515
FatI	CATG	4 cut(s)	93, 120, 310, 511
FauI	CCCGC	1 cut(s)	689
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	4 cut(s)	270, 345, 603, 681
FokI	GGATG	2 cut(s)	401, 659
Fsp4HI	GCNGC	4 cut(s)	270, 345, 603, 681
FspBI	CTAG	3 cut(s)	188, 290, 677
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	4 cut(s)	270, 345, 603, 681
GsaI	CCCAGC	3 cut(s)	377, 716, 734
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	7 cut(s)	288, 302, 308, 363, 683, 729, 807
HapII	CCGG	4 cut(s)	285, 357, 423, 684
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	4 cut(s)	97, 124, 314, 515
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	4 cut(s)	285, 357, 423, 684
HphI	GGTGA	4 cut(s)	16, 164, 481, 830
Hpy166II	GTNNAC	2 cut(s)	583, 623
Hpy188I	TCNGA	2 cut(s)	389, 859
Hpy188III	TCNNGA	2 cut(s)	80, 94
Hpy8I	GTNNAC	2 cut(s)	583, 623
Hpy99I	CGWCG	2 cut(s)	344, 467
HpyAV	CCTTC	4 cut(s)	57, 218, 536, 610
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4V	TGCA	4 cut(s)	269, 314, 347, 647
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 602, 644, 726
HpyF3I	CTNAG	2 cut(s)	129, 451
Hsp92II	CATG	4 cut(s)	97, 124, 314, 515
HspAI	GCGC	1 cut(s)	33
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
Kzo9I	GATC	5 cut(s)	76, 630, 701, 765, 833
LmnI	GCTCC	3 cut(s)	176, 461, 533
Lsp1109I	GCAGC	2 cut(s)	281, 331
LweI	GCATC	2 cut(s)	87, 256
MaeI	CTAG	3 cut(s)	188, 290, 677
MaeIII	GTNAC	4 cut(s)	152, 379, 487, 818
MalI	GATC	5 cut(s)	78, 632, 703, 767, 835
MboI	GATC	5 cut(s)	76, 630, 701, 765, 833
MboII	GAAGA	2 cut(s)	19, 872
MflI	RGATCY	3 cut(s)	701, 765, 833
MlsI	TGGCCA	1 cut(s)	363
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	6 cut(s)	185, 251, 395, 488, 532, 788
Mox20I	TGGCCA	1 cut(s)	363
Mph1103I	ATGCAT	1 cut(s)	316
MroNI	GCCGGC	1 cut(s)	284
MroXI	GAANNNNTTC	1 cut(s)	67
MscI	TGGCCA	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	363
MspA1I	CMGCKG	3 cut(s)	377, 696, 744
MspI	CCGG	4 cut(s)	285, 357, 423, 684
MspR9I	CCNGG	1 cut(s)	809
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	809
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	4 cut(s)	134, 602, 644, 726
NaeI	GCCGGC	1 cut(s)	286
NdeII	GATC	5 cut(s)	76, 630, 701, 765, 833
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	4 cut(s)	97, 124, 314, 515
NlaIV	GGNNCC	4 cut(s)	172, 457, 667, 835
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	4 cut(s)	152, 379, 487, 818
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	1 cut(s)	124
PagI	TCATGA	1 cut(s)	93
PciI	ACATGT	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PctI	GAATGC	1 cut(s)	67
PdiI	GCCGGC	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	67
PflMI	CCANNNNNTGG	2 cut(s)	512, 788
PkrI	GCNGC	4 cut(s)	271, 346, 604, 682
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PscI	ACATGT	1 cut(s)	120
PsiI	TTATAA	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	807
PspFI	CCCAGC	3 cut(s)	373, 712, 730
PspGI	CCWGG	1 cut(s)	807
PspN4I	GGNNCC	4 cut(s)	172, 457, 667, 835
PspPI	GGNCC	4 cut(s)	307, 686, 728, 779
PstNI	CAGNNNCTG	1 cut(s)	857
PsuI	RGATCY	3 cut(s)	701, 765, 833
PvuII	CAGCTG	1 cut(s)	377
SatI	GCNGC	4 cut(s)	270, 345, 603, 681
Sau3AI	GATC	5 cut(s)	76, 630, 701, 765, 833
Sau96I	GGNCC	4 cut(s)	307, 686, 728, 779
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	809
SfaNI	GCATC	2 cut(s)	87, 256
SfcI	CTRYAG	2 cut(s)	72, 261
SinI	GGWCC	2 cut(s)	686, 779
SmlI	CTYRAG	2 cut(s)	176, 479
SmoI	CTYRAG	2 cut(s)	176, 479
SsiI	CCGC	5 cut(s)	296, 603, 680, 696, 744
SspMI	CTAG	3 cut(s)	188, 290, 677
StyD4I	CCNGG	1 cut(s)	807
TaaI	ACNGT	1 cut(s)	589
TauI	GCSGC	2 cut(s)	605, 683
TscAI	CASTG	1 cut(s)	592
TseFI	GTSAC	4 cut(s)	152, 379, 487, 818
TseI	GCWGC	2 cut(s)	269, 344
Tsp45I	GTSAC	4 cut(s)	152, 379, 487, 818
TspDTI	ATGAA	4 cut(s)	187, 646, 722, 817
TspGWI	ACGGA	1 cut(s)	328
TspRI	CASTG	1 cut(s)	592
Van91I	CCANNNNNTGG	2 cut(s)	512, 788
VpaK11BI	GGWCC	2 cut(s)	686, 779
XceI	RCATGY	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	582
XmnI	GAANNNNTTC	1 cut(s)	67
XspI	CTAG	3 cut(s)	188, 290, 677
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.