AT4G17350

Plant pleckstrin homology-like region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011081
Physical Location & Seq
Forward (+)
9701132 .. 9703574
2443 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17350.1

Sequence Viewer

Length: 1218 bp
ATGGAAAGTGGCTTTTATTCAGATTGGAAAGATACTTCTTCTTCTTCGTTCTTTGGATCAGAGAATATGGAGGAAGAGTTGGAAGATGGAGTTCTTAGAGCTGAAGAGCTTTTCTCATCGATTCCTCAACCTCAGACACCTAAAGAGCCAATGGAGTTTCTGTCTAGATCCTGGAGTCTCTCTACTTCTGAAATCTCCAAAGCACTTGCTCTCAAACATAGACAACAACAAGATCAGTTTTGTGTTGGCCAGAACAGTCCTCCTGTTTTGTTCCCTGATGCTGCTGCAGATCCACTCGTGGCTGGGAAGATCATGAACTCTGTTGGCACACGTAGAGCAGGGACATTGTCTAAATGGTTTCACCACAACAAGGAACACAGCACCAGCAGTACTACTACCAATCTCAAGAAGAAAGATAAAGTGCGTGTGGAGAACGCCCACGTGCATTCTGCCGTCTCTATAGCGGCTCTGGCTGCAGGTTTAGCCTCTGTGACATCTGCTAGCAATTGCAAAGGGTCAGGCTCCAAGATGGCACTGGCTTTAGCCTCAGCCACTGAACTGTTGGCCTCACACTGTGTTGAGATGGCTGAGCGAGCCGGTGCTGACCATGCACGTGTTACTTCCACGGTTAGATCTTCTGTGGATATCCACAGCCCCGGTGATCTCATGACTCTAACAGCCGCTGCTGCAACTGCTTTGAGAGGAGAAGCGGCTCTGAAGGCGAGGCAGCCAAAGGAAGCAAGGAAAAATGCAGCTATTACCCCTTTTGAGAGAAGTTTCTCTGATTCTCATTGGCATGCAAATTTTCAGTATAGATTGGAAGAACCAAATCTTCCATTTGAAGGCGAACTGATGCAATGTGCACGAAATGGAGTGCAGCGAACTAAGCGTGTCTGTGTCTATATCAACAAGAAGTCTCAGGTAATGATCAAACTCAAAAGCAAACATGTTGGAGGGGCATTCTCTAAGAAAATCAAATGCGTTGTCTATGGAGTCTGCGATGAGAAATCAGCTTGGCCTTACAGGAAAGAGAGGGAAAATTCAGAAGAAGTCTACTTCGGTCTGAAAACCGGACAAGGTCTTTTGGAGTTCAAGTGCAAGAGCAAGATTCACAAGCAGAGATGGGTTGATGGGGTTCAGTCTCTTCTCCGCCAAGTAAATTGCTTTGAGGCTGCCAAATGCTCGCTGGGATCTCTGAATCTCACTGGTCACACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

405

Amino Acids

44.53

Weight (kDa)

9.1

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 44 - 108 4e-11 Auxin canalisation
Auxin_canalis PF05703 109 - 258 6.8e-43 Auxin canalisation
PH_2 PF08458 283 - 386 1.6e-40 Plant pleckstrin homology-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17350 AT5G47440
fragaria_vesca FvH4_5g19120 FvH4_5g19120
malus_domestica MD06G1056800.v1.1
prunus_persica Prupe.5G067500_v2.0.a1 Prupe.5G067500_v2.0.a1 Prupe.5G067500_v2.0.a1
pyrus_communis pycom06g04740
rosa_chinensis RchiOBHm_Chr7g0203601
rosa_laevigata RLG00000003515
rosa_multiflora Rmu_sc0010675.1_g000003
rosa_roxburghii Rroxscaffold_3G00253650
rosa_rugosa Rorug07G0077200 Rorug07G0077300
rosa_samantha Rh7AG207000 Rh7BG206500 Rh7CG219600 Rh7DG214200
rosa_wichuraiana Rw7G018060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 467
AccI GTMKAC 1 cut(s) 1053
AciI CCGC 4 cut(s) 464, 681, 710, 1150
AclWI GGATC 4 cut(s) 64, 162, 284, 1198
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 2 cut(s) 802, 1039
AcuI CTGAAG 2 cut(s) 123, 737
AcvI CACGTG 3 cut(s) 442, 614, 1215
AdeI CACNNNGTG 1 cut(s) 575
AfaI GTAC 1 cut(s) 391
AfiI CCNNNNNNNGG 2 cut(s) 370, 842
AflIII ACRYGT 4 cut(s) 329, 613, 946, 1212
AgsI TTSAA 2 cut(s) 842, 1093
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 4 cut(s) 101, 109, 755, 1013
AluI AGCT 4 cut(s) 101, 109, 755, 1013
Alw21I GWGCWC 1 cut(s) 865
Alw26I GTCTC 4 cut(s) 182, 460, 921, 1146
Alw44I GTGCAC 1 cut(s) 861
AlwI GGATC 4 cut(s) 64, 162, 284, 1198
AlwNI CAGNNNCTG 2 cut(s) 554, 683
AoxI GGCC 3 cut(s) 247, 564, 1016
ApaLI GTGCAC 1 cut(s) 861
ApeKI GCWGC 9 cut(s) 281, 284, 473, 683, 686, 727, 752, 877, 1172
ApoI RAATTY 2 cut(s) 802, 1039
ArsI GACNNNNNNTTYG 2 cut(s) 969, 1001
AsuC2I CCSGG 1 cut(s) 657
AsuHPI GGTGA 2 cut(s) 353, 671
AsuNHI GCTAGC 1 cut(s) 500
BaeGI GKGCMC 1 cut(s) 865
BalI TGGCCA 1 cut(s) 249
BauI CACGAG 1 cut(s) 296
BbrPI CACGTG 3 cut(s) 442, 614, 1215
Bbv12I GWGCWC 1 cut(s) 865
BbvCI CCTCAGC 1 cut(s) 547
BbvI GCAGC 9 cut(s) 268, 271, 460, 670, 673, 739, 764, 889, 1159
BccI CCATC 5 cut(s) 80, 523, 577, 1116, 1124
BceAI ACGGC 1 cut(s) 437
BciT130I CCWGG 1 cut(s) 172
BclI TGATCA 1 cut(s) 927
BcnI CCSGG 1 cut(s) 657
BcoDI GTCTC 4 cut(s) 182, 460, 921, 1146
BfaI CTAG 2 cut(s) 165, 501
BfmI CTRYAG 3 cut(s) 285, 459, 474
BfuAI ACCTGC 1 cut(s) 467
BglII AGATCT 1 cut(s) 632
BlpI GCTNAGC 1 cut(s) 588
BmcAI AGTACT 1 cut(s) 391
Bme1390I CCNGG 2 cut(s) 172, 657
BmiI GGNNCC 1 cut(s) 523
BmrFI CCNGG 2 cut(s) 172, 657
BmsI GCATC 2 cut(s) 268, 843
BmtI GCTAGC 1 cut(s) 504
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpmI CTGGAG 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 547
Bpu1102I GCTNAGC 1 cut(s) 588
BpuEI CTTGAG 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 657
Bsa29I ATCGAT 1 cut(s) 119
BsaAI YACGTR 4 cut(s) 332, 442, 614, 1215
BsaJI CCNNGG 2 cut(s) 624, 655
BsaWI WCCGGW 1 cut(s) 1070
BsaXI ACNNNNNCTCC 6 cut(s) 62, 92, 146, 176, 1079, 1109
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 842
Bse118I RCCGGY 1 cut(s) 596
Bse1I ACTGG 2 cut(s) 540, 1210
Bse3DI GCAATG 1 cut(s) 863
BseBI CCWGG 1 cut(s) 172
BseCI ATCGAT 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 624, 655
BseLI CCNNNNNNNGG 2 cut(s) 370, 842
BseMI GCAATG 1 cut(s) 863
BseMII CTCAG 4 cut(s) 146, 561, 579, 932
BseNI ACTGG 2 cut(s) 540, 1210
BseRI GAGGAG 1 cut(s) 717
BseSI GKGCMC 1 cut(s) 865
BseXI GCAGC 9 cut(s) 268, 271, 460, 670, 673, 739, 764, 889, 1159
BseYI CCCAGC 2 cut(s) 302, 1186
BsgI GTGCAG 1 cut(s) 896
BshFI GGCC 3 cut(s) 249, 566, 1018
BshVI ATCGAT 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 865
BsiSI CCGG 3 cut(s) 597, 657, 1071
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 2 cut(s) 370, 842
BsmAI GTCTC 4 cut(s) 182, 460, 921, 1146
BsmBI CGTCTC 1 cut(s) 460
BsmFI GGGAC 1 cut(s) 355
BsmI GAATGC 2 cut(s) 445, 959
BsnI GGCC 3 cut(s) 249, 566, 1018
Bsp1286I GDGCHC 1 cut(s) 865
Bsp143I GATC 9 cut(s) 56, 167, 232, 289, 309, 632, 661, 927, 1190
Bsp1720I GCTNAGC 1 cut(s) 588
BspACI CCGC 4 cut(s) 464, 681, 710, 1150
BspANI GGCC 3 cut(s) 249, 566, 1018
BspCNI CTCAG 4 cut(s) 145, 560, 580, 931
BspDI ATCGAT 1 cut(s) 119
BspHI TCATGA 2 cut(s) 312, 666
BspLI GGNNCC 1 cut(s) 523
BspMAI CTGCAG 2 cut(s) 289, 478
BspMI ACCTGC 1 cut(s) 467
BspOI GCTAGC 1 cut(s) 504
BspPI GGATC 4 cut(s) 64, 162, 284, 1198
BspQI GCTCTTC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 863
BsrFI RCCGGY 1 cut(s) 596
BsrI ACTGG 2 cut(s) 540, 1210
BssAI RCCGGY 1 cut(s) 596
BssECI CCNNGG 2 cut(s) 624, 655
BssMI GATC 9 cut(s) 56, 167, 232, 289, 309, 632, 661, 927, 1190
BssSI CACGAG 1 cut(s) 296
Bst2BI CACGAG 1 cut(s) 296
Bst2UI CCWGG 1 cut(s) 172
Bst4CI ACNGT 4 cut(s) 257, 561, 575, 628
Bst6I CTCTTC 3 cut(s) 69, 99, 1149
BstBAI YACGTR 4 cut(s) 332, 442, 614, 1215
BstC8I GCNNGC 4 cut(s) 502, 594, 798, 1184
BstDEI CTNAG 7 cut(s) 95, 132, 547, 588, 885, 918, 966
BstDSI CCRYGG 1 cut(s) 624
BstKTI GATC 9 cut(s) 59, 170, 235, 292, 312, 635, 664, 930, 1193
BstMAI GTCTC 4 cut(s) 182, 460, 921, 1146
BstMBI GATC 9 cut(s) 56, 167, 232, 289, 309, 632, 661, 927, 1190
BstMWI GCNNNNNNNGC 9 cut(s) 470, 473, 482, 593, 608, 686, 692, 719, 886
BstNI CCWGG 1 cut(s) 172
BstNSI RCATGY 2 cut(s) 800, 950
BstSCI CCNGG 2 cut(s) 170, 655
BstSFI CTRYAG 3 cut(s) 285, 459, 474
BstSLI GKGCMC 1 cut(s) 865
BstV1I GCAGC 9 cut(s) 268, 271, 460, 670, 673, 739, 764, 889, 1159
BstX2I RGATCY 4 cut(s) 167, 289, 632, 1190
BstYI RGATCY 4 cut(s) 167, 289, 632, 1190
Bsu15I ATCGAT 1 cut(s) 119
BsuRI GGCC 3 cut(s) 249, 566, 1018
BsuTUI ATCGAT 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 624
BtgZI GCGATG 1 cut(s) 1014
BtsIMutI CAGTG 4 cut(s) 533, 552, 571, 1203
BveI ACCTGC 1 cut(s) 467
Cac8I GCNNGC 4 cut(s) 502, 594, 798, 1184
CaiI CAGNNNCTG 2 cut(s) 554, 683
CciI TCATGA 2 cut(s) 312, 666
Cfr10I RCCGGY 1 cut(s) 596
ClaI ATCGAT 1 cut(s) 119
Csp6I GTAC 1 cut(s) 390
CviAII CATG 5 cut(s) 313, 608, 667, 797, 947
CviQI GTAC 1 cut(s) 390
DdeI CTNAG 7 cut(s) 95, 132, 547, 588, 885, 918, 966
DpnI GATC 9 cut(s) 58, 169, 234, 291, 311, 634, 663, 929, 1192
DpnII GATC 9 cut(s) 56, 167, 232, 289, 309, 632, 661, 927, 1190
DraIII CACNNNGTG 1 cut(s) 575
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 3 cut(s) 69, 99, 1149
EarI CTCTTC 3 cut(s) 69, 99, 1149
EciI GGCGGA 1 cut(s) 1139
Eco32I GATATC 1 cut(s) 646
Eco57I CTGAAG 2 cut(s) 123, 737
Eco72I CACGTG 3 cut(s) 442, 614, 1215
EcoRII CCWGG 1 cut(s) 170
EcoRV GATATC 1 cut(s) 646
Esp3I CGTCTC 1 cut(s) 460
FaeI CATG 5 cut(s) 316, 611, 670, 800, 950
FaqI GGGAC 1 cut(s) 355
FatI CATG 5 cut(s) 312, 607, 666, 796, 946
FbaI TGATCA 1 cut(s) 927
FblI GTMKAC 1 cut(s) 1053
FspBI CTAG 2 cut(s) 165, 501
GsaI CCCAGC 2 cut(s) 306, 1190
GsuI CTGGAG 1 cut(s) 193
HaeIII GGCC 3 cut(s) 249, 566, 1018
HapII CCGG 3 cut(s) 597, 657, 1071
Hin1II CATG 5 cut(s) 316, 611, 670, 800, 950
HinfI GANTC 7 cut(s) 121, 175, 670, 785, 993, 1108, 1198
HpaII CCGG 3 cut(s) 597, 657, 1071
HphI GGTGA 2 cut(s) 353, 671
Hpy166II GTNNAC 2 cut(s) 863, 1054
Hpy188I TCNGA 9 cut(s) 22, 61, 135, 190, 717, 784, 1045, 1065, 1197
Hpy188III TCNNGA 4 cut(s) 165, 313, 406, 667
Hpy8I GTNNAC 2 cut(s) 863, 1054
HpyAV CCTTC 2 cut(s) 712, 836
HpyCH4III ACNGT 4 cut(s) 257, 561, 575, 628
HpyCH4IV ACGT 4 cut(s) 331, 441, 613, 1214
HpyF10VI GCNNNNNNNGC 9 cut(s) 470, 473, 482, 593, 608, 686, 692, 719, 886
HpyF3I CTNAG 7 cut(s) 95, 132, 547, 588, 885, 918, 966
HpySE526I ACGT 4 cut(s) 331, 441, 613, 1214
Hsp92II CATG 5 cut(s) 316, 611, 670, 800, 950
Ksp22I TGATCA 1 cut(s) 927
Kzo9I GATC 9 cut(s) 56, 167, 232, 289, 309, 632, 661, 927, 1190
LguI GCTCTTC 1 cut(s) 99
LmnI GCTCC 1 cut(s) 527
Lsp1109I GCAGC 9 cut(s) 268, 271, 460, 670, 673, 739, 764, 889, 1159
LweI GCATC 2 cut(s) 268, 843
MaeI CTAG 2 cut(s) 165, 501
MaeII ACGT 4 cut(s) 331, 441, 613, 1214
MaeIII GTNAC 3 cut(s) 490, 616, 1208
MalI GATC 9 cut(s) 58, 169, 234, 291, 311, 634, 663, 929, 1192
MboI GATC 9 cut(s) 56, 167, 232, 289, 309, 632, 661, 927, 1190
MfeI CAATTG 1 cut(s) 505
MflI RGATCY 4 cut(s) 167, 289, 632, 1190
MhlI GDGCHC 1 cut(s) 865
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 4 cut(s) 505, 802, 1039, 1159
MluNI TGGCCA 1 cut(s) 249
MlyI GAGTC 3 cut(s) 184, 664, 1002
MmeI TCCRAC 2 cut(s) 60, 931
Mox20I TGGCCA 1 cut(s) 249
MscI TGGCCA 1 cut(s) 249
MslI CAYNNNNRTG 2 cut(s) 612, 795
Msp20I TGGCCA 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 3 cut(s) 597, 657, 1071
MspR9I CCNGG 2 cut(s) 172, 657
MunI CAATTG 1 cut(s) 505
Mva1269I GAATGC 2 cut(s) 445, 959
MvaI CCWGG 1 cut(s) 172
MwoI GCNNNNNNNGC 9 cut(s) 470, 473, 482, 593, 608, 686, 692, 719, 886
NciI CCSGG 1 cut(s) 657
NdeII GATC 9 cut(s) 56, 167, 232, 289, 309, 632, 661, 927, 1190
NheI GCTAGC 1 cut(s) 500
NlaIII CATG 5 cut(s) 316, 611, 670, 800, 950
NlaIV GGNNCC 1 cut(s) 523
NmuCI GTSAC 2 cut(s) 490, 1208
NspI RCATGY 2 cut(s) 800, 950
PaeI GCATGC 1 cut(s) 800
PagI TCATGA 2 cut(s) 312, 666
PciI ACATGT 1 cut(s) 946
PciSI GCTCTTC 1 cut(s) 99
PctI GAATGC 2 cut(s) 445, 959
PfeI GAWTC 4 cut(s) 121, 785, 1108, 1198
PflFI GACNNNGTC 2 cut(s) 346, 1077
PfoI TCCNGGA 1 cut(s) 170
PleI GAGTC 3 cut(s) 183, 664, 1001
PmaCI CACGTG 3 cut(s) 442, 614, 1215
PmlI CACGTG 3 cut(s) 442, 614, 1215
PpsI GAGTC 3 cut(s) 183, 664, 1001
Ppu21I YACGTR 4 cut(s) 332, 442, 614, 1215
PscI ACATGT 1 cut(s) 946
Psp6I CCWGG 1 cut(s) 170
PspCI CACGTG 3 cut(s) 442, 614, 1215
PspFI CCCAGC 2 cut(s) 302, 1186
PspGI CCWGG 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 523
PstI CTGCAG 2 cut(s) 289, 478
PstNI CAGNNNCTG 2 cut(s) 554, 683
PsuI RGATCY 4 cut(s) 167, 289, 632, 1190
PsyI GACNNNGTC 2 cut(s) 346, 1077
RsaI GTAC 1 cut(s) 391
RsaNI GTAC 1 cut(s) 390
RseI CAYNNNNRTG 2 cut(s) 612, 795
SapI GCTCTTC 1 cut(s) 99
Sau3AI GATC 9 cut(s) 56, 167, 232, 289, 309, 632, 661, 927, 1190
ScaI AGTACT 1 cut(s) 391
SchI GAGTC 3 cut(s) 184, 664, 1002
ScrFI CCNGG 2 cut(s) 172, 657
SduI GDGCHC 1 cut(s) 865
SfaNI GCATC 2 cut(s) 268, 843
SfcI CTRYAG 3 cut(s) 285, 459, 474
SmiMI CAYNNNNRTG 2 cut(s) 612, 795
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
SphI GCATGC 1 cut(s) 800
Sse9I AATT 4 cut(s) 505, 802, 1039, 1159
SsiI CCGC 4 cut(s) 464, 681, 710, 1150
SspMI CTAG 2 cut(s) 165, 501
StyD4I CCNGG 2 cut(s) 170, 655
TaaI ACNGT 4 cut(s) 257, 561, 575, 628
TaiI ACGT 4 cut(s) 334, 444, 616, 1217
TaqI TCGA 1 cut(s) 119
TaqII GACCGA 1 cut(s) 1049
TasI AATT 4 cut(s) 505, 802, 1039, 1159
TatI WGTACW 1 cut(s) 389
TauI GCSGC 3 cut(s) 467, 683, 713
TfiI GAWTC 4 cut(s) 121, 785, 1108, 1198
TscAI CASTG 4 cut(s) 540, 559, 578, 1210
TseFI GTSAC 2 cut(s) 490, 1208
TseI GCWGC 9 cut(s) 281, 284, 473, 683, 686, 727, 752, 877, 1172
Tsp45I GTSAC 2 cut(s) 490, 1208
TspDTI ATGAA 1 cut(s) 329
TspRI CASTG 4 cut(s) 540, 559, 578, 1210
Tth111I GACNNNGTC 2 cut(s) 346, 1077
VneI GTGCAC 1 cut(s) 861
XapI RAATTY 2 cut(s) 802, 1039
XbaI TCTAGA 1 cut(s) 164
XceI RCATGY 2 cut(s) 800, 950
XcmI CCANNNNNNNNNTGG 3 cut(s) 532, 559, 1183
XmiI GTMKAC 1 cut(s) 1053
XspI CTAG 2 cut(s) 165, 501
ZrmI AGTACT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.