Rh7DG214200

Auxin canalisation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011081
Physical Location & Seq
Forward (+)
20634106 .. 20638131
4026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG214200.1

Sequence Viewer

Length: 1182 bp
ATGGAAGACAGTTATCATAGTTTAGCCTCGAAGATTAGTAATACAGGTGGTTCTTTGCATGGGCCAGAGAAGTTACAGGAAGCAGATGACATGAAAATTGCTCCATATATGGCTGGAATTCCTCAACCACAGACACCGCAGGAGCCTATGGAGTTCTTGTCAAGGTCATGGAGTATCTCTGCTTCGGAAATCTCGAAGGCTCTCGCTAAAAAACAGAAGCAATCTAACATTCCCAAGAGTCCTGACACAGTCCTAGAGTCAATTCCTTTACCACAAGTGCGAGGCAAGGTCAGGAAATCTGGTACTAAACAGAGTCGGAGAACCGGGTCAATTGGAAAATGGTTCAACAATGAGTTCACTAATAGCACAGTGAAGAAGAAAGACAAGGAACGGATGGAAAGGGCGCGAGTGCATTCTGCAGTCTCCATTGCAGGAGTTGCTGCAGCCTTGGCTGCTATAATGGCAGCAGAAAACACCAGTGGCCCTCCCTCGAAAATGGCCATGTCTTTGGCATTGGCTACAGAATTGCTGGCATCACATTGCATTGAAATGGCAGAGTCGGAAGGAGCTGATCGCAACCGTCTGGCATCTACCGTCAGATCAGCCCTTGACATTCAGAGTCCTGGTGATCTTATGACCCTTACAGCAGCAGCTGCAACAGCATTGCGAGGAGAAGCAGCACTGAAAGCAAGATTACCGAAAGAGCCAAAAAAGAATGCGGCCATTAGTCCCTATGATAGGGGAATGGCAGAAATTACTTCACCTTTGGCTTTTCATAGTCATATGGAGGAGCAGGATGGTCCCTGTGATGGAGATTTACTGCAACTTATGGGAAAAGGTATTCAACAATGGAAGAGTGTCTCTGTCTACATAAAAAAATCTCAGGTCATGATTAAACTCAAACGTAAACATGTTGGGGGAGCCTTTGCCAAGAAGAGTAAAAGTGTTGTTTATGGAGTCTGTGATGAGAATTCTGCTTGGCCATATATGATAGAAAGGGATATTCCAGAAGAGGTTTATTTTGGCCTCAAAACTGGACAGGGTTTAATGGAATTCAAGTGCAGGAGTAAGGCCCATAAGCAGCAATGGGTTGATGGGATCAAAAATCTTCTTCGTCGAGTCAGCTCTGTTGATGAAGCTGAGCGCTCTATCGGACTTTTAAGCGTCAGCAATAGCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

393

Amino Acids

42.85

Weight (kDa)

9.43

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 43 - 75 2.3e-11 Auxin canalisation
Auxin_canalis PF05703 98 - 247 1.3e-48 Auxin canalisation
PH_2 PF08458 272 - 374 2.3e-34 Plant pleckstrin homology-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17350 AT5G47440
fragaria_vesca FvH4_5g19120 FvH4_5g19120
malus_domestica MD06G1056800.v1.1
prunus_persica Prupe.5G067500_v2.0.a1 Prupe.5G067500_v2.0.a1 Prupe.5G067500_v2.0.a1
pyrus_communis pycom06g04740
rosa_chinensis RchiOBHm_Chr7g0203601
rosa_laevigata RLG00000003515
rosa_multiflora Rmu_sc0010675.1_g000003
rosa_roxburghii Rroxscaffold_3G00253650
rosa_rugosa Rorug07G0077200 Rorug07G0077300
rosa_samantha Rh7AG207000 Rh7BG206500 Rh7CG219600 Rh7DG214200
rosa_wichuraiana Rw7G018060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 867
AccII CGCG 1 cut(s) 406
AciI CCGC 2 cut(s) 137, 719
AclWI GGATC 1 cut(s) 1106
AcoI YGGCCR 3 cut(s) 498, 720, 980
AcsI RAATTY 3 cut(s) 117, 970, 1052
AfaI GTAC 1 cut(s) 304
AfeI AGCGCT 1 cut(s) 1145
AfiI CCNNNNNNNGG 2 cut(s) 738, 809
AflIII ACRYGT 1 cut(s) 910
AgsI TTSAA 4 cut(s) 346, 548, 845, 1057
AjnI CCWGG 1 cut(s) 622
AluBI AGCT 4 cut(s) 569, 653, 1125, 1139
AluI AGCT 4 cut(s) 569, 653, 1125, 1139
Alw26I GTCTC 2 cut(s) 427, 865
AlwI GGATC 1 cut(s) 1106
AlwNI CAGNNNCTG 1 cut(s) 653
Aor51HI AGCGCT 1 cut(s) 1145
AoxI GGCC 7 cut(s) 62, 481, 498, 720, 980, 1024, 1071
ApeKI GCWGC 9 cut(s) 440, 443, 452, 464, 647, 650, 653, 677, 1081
ApoI RAATTY 3 cut(s) 117, 970, 1052
AspLEI GCGC 2 cut(s) 406, 1146
AspS9I GGNCC 4 cut(s) 62, 482, 800, 1072
AsuC2I CCSGG 1 cut(s) 325
AsuHPI GGTGA 2 cut(s) 638, 753
AvaII GGWCC 1 cut(s) 800
BalI TGGCCA 2 cut(s) 500, 982
BarI GAAGNNNNNNTAC 2 cut(s) 166, 198
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 9 cut(s) 427, 439, 455, 476, 640, 659, 662, 689, 1093
BccI CCATC 4 cut(s) 388, 791, 803, 1088
BciT130I CCWGG 1 cut(s) 624
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 427, 865
BfaI CTAG 1 cut(s) 254
BfmI CTRYAG 3 cut(s) 417, 441, 519
BfoI RGCGCY 1 cut(s) 1147
BlpI GCTNAGC 1 cut(s) 1140
Bme1390I CCNGG 2 cut(s) 325, 624
Bme18I GGWCC 1 cut(s) 800
BmgT120I GGNCC 4 cut(s) 62, 482, 800, 1072
BmiI GGNNCC 3 cut(s) 144, 802, 922
BmrFI CCNGG 2 cut(s) 325, 624
BmsI GCATC 2 cut(s) 542, 596
BpiI GAAGAC 1 cut(s) 12
Bpu1102I GCTNAGC 1 cut(s) 1140
BpuMI CCSGG 1 cut(s) 325
BsaJI CCNNGG 1 cut(s) 447
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 2 cut(s) 738, 809
Bse1I ACTGG 2 cut(s) 477, 1039
Bse3DI GCAATG 4 cut(s) 426, 538, 662, 1091
BseBI CCWGG 1 cut(s) 624
BseDI CCNNGG 1 cut(s) 447
BseGI GGATG 2 cut(s) 399, 802
BseLI CCNNNNNNNGG 2 cut(s) 738, 809
BseMI GCAATG 4 cut(s) 426, 538, 662, 1091
BseMII CTCAG 2 cut(s) 896, 1131
BseNI ACTGG 2 cut(s) 477, 1039
BseRI GAGGAG 2 cut(s) 684, 803
BseXI GCAGC 9 cut(s) 427, 439, 455, 476, 640, 659, 662, 689, 1093
BsgI GTGCAG 1 cut(s) 1081
Bsh1236I CGCG 1 cut(s) 406
BshFI GGCC 7 cut(s) 64, 483, 500, 722, 982, 1026, 1073
BsiSI CCGG 1 cut(s) 324
BslFI GGGAC 2 cut(s) 714, 786
BslI CCNNNNNNNGG 2 cut(s) 738, 809
BsmAI GTCTC 2 cut(s) 427, 865
BsmFI GGGAC 2 cut(s) 714, 786
BsmI GAATGC 2 cut(s) 412, 721
BsnI GGCC 7 cut(s) 64, 483, 500, 722, 982, 1026, 1073
Bsp143I GATC 4 cut(s) 571, 599, 628, 1098
Bsp1720I GCTNAGC 1 cut(s) 1140
BspACI CCGC 2 cut(s) 137, 719
BspANI GGCC 7 cut(s) 64, 483, 500, 722, 982, 1026, 1073
BspCNI CTCAG 2 cut(s) 895, 1132
BspFNI CGCG 1 cut(s) 406
BspHI TCATGA 1 cut(s) 888
BspLI GGNNCC 3 cut(s) 144, 802, 922
BspMAI CTGCAG 2 cut(s) 421, 445
BspPI GGATC 1 cut(s) 1106
BsrDI GCAATG 4 cut(s) 426, 538, 662, 1091
BsrI ACTGG 2 cut(s) 477, 1039
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 4 cut(s) 571, 599, 628, 1098
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 624
Bst4CI ACNGT 5 cut(s) 11, 250, 370, 581, 595
Bst6I CTCTTC 3 cut(s) 848, 929, 1005
BstAPI GCANNNNNTGC 2 cut(s) 437, 653
BstC8I GCNNGC 1 cut(s) 531
BstDEI CTNAG 2 cut(s) 882, 1140
BstENI CCTNNNNNAGG 1 cut(s) 736
BstF5I GGATG 2 cut(s) 399, 802
BstFNI CGCG 1 cut(s) 406
BstH2I RGCGCY 1 cut(s) 1147
BstHHI GCGC 2 cut(s) 406, 1146
BstKTI GATC 4 cut(s) 574, 602, 631, 1101
BstMAI GTCTC 2 cut(s) 427, 865
BstMBI GATC 4 cut(s) 571, 599, 628, 1098
BstMWI GCNNNNNNNGC 7 cut(s) 437, 449, 452, 461, 653, 659, 686
BstNI CCWGG 1 cut(s) 624
BstNSI RCATGY 1 cut(s) 914
BstSCI CCNGG 2 cut(s) 323, 622
BstSFI CTRYAG 3 cut(s) 417, 441, 519
BstUI CGCG 1 cut(s) 406
BstV1I GCAGC 9 cut(s) 427, 439, 455, 476, 640, 659, 662, 689, 1093
BstV2I GAAGAC 1 cut(s) 12
BstXI CCANNNNNNTGG 1 cut(s) 508
BsuRI GGCC 7 cut(s) 64, 483, 500, 722, 982, 1026, 1073
BtsCI GGATG 2 cut(s) 399, 802
BtsIMutI CAGTG 3 cut(s) 375, 484, 680
Cac8I GCNNGC 1 cut(s) 531
CaiI CAGNNNCTG 1 cut(s) 653
CciI TCATGA 1 cut(s) 888
CfoI GCGC 2 cut(s) 406, 1146
Cfr13I GGNCC 4 cut(s) 62, 482, 800, 1072
CseI GACGC 1 cut(s) 1153
Csp6I GTAC 1 cut(s) 303
CviAII CATG 6 cut(s) 59, 91, 168, 502, 889, 911
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 2 cut(s) 882, 1140
DpnI GATC 4 cut(s) 573, 601, 630, 1100
DpnII GATC 4 cut(s) 571, 599, 628, 1098
EaeI YGGCCR 3 cut(s) 498, 720, 980
Eam1104I CTCTTC 3 cut(s) 848, 929, 1005
EarI CTCTTC 3 cut(s) 848, 929, 1005
Eco130I CCWWGG 1 cut(s) 447
Eco47I GGWCC 1 cut(s) 800
Eco47III AGCGCT 1 cut(s) 1145
EcoNI CCTNNNNNAGG 1 cut(s) 736
EcoRI GAATTC 3 cut(s) 117, 970, 1052
EcoRII CCWGG 1 cut(s) 622
EcoT14I CCWWGG 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 6 cut(s) 62, 94, 171, 505, 892, 914
FaqI GGGAC 2 cut(s) 714, 786
FatI CATG 6 cut(s) 58, 90, 167, 501, 888, 910
FauNDI CATATG 2 cut(s) 783, 1178
FblI GTMKAC 1 cut(s) 867
FokI GGATG 2 cut(s) 406, 809
FspBI CTAG 1 cut(s) 254
GlaI GCGC 2 cut(s) 405, 1145
HaeII RGCGCY 1 cut(s) 1147
HaeIII GGCC 7 cut(s) 64, 483, 500, 722, 982, 1026, 1073
HapII CCGG 1 cut(s) 324
HgaI GACGC 1 cut(s) 1153
HhaI GCGC 2 cut(s) 406, 1146
Hin1II CATG 6 cut(s) 62, 94, 171, 505, 892, 914
Hin6I GCGC 2 cut(s) 404, 1144
HinP1I GCGC 2 cut(s) 404, 1144
HinfI GANTC 7 cut(s) 238, 257, 313, 557, 619, 957, 1119
HpaII CCGG 1 cut(s) 324
HphI GGTGA 2 cut(s) 638, 753
Hpy166II GTNNAC 3 cut(s) 357, 868, 908
Hpy188I TCNGA 6 cut(s) 187, 318, 562, 599, 618, 1154
Hpy188III TCNNGA 5 cut(s) 193, 242, 292, 889, 1007
Hpy8I GTNNAC 3 cut(s) 357, 868, 908
Hpy99I CGWCG 1 cut(s) 1119
HpyAV CCTTC 2 cut(s) 190, 557
HpyCH4III ACNGT 5 cut(s) 11, 250, 370, 581, 595
HpyCH4IV ACGT 1 cut(s) 904
HpyCH4V TGCA 9 cut(s) 58, 412, 419, 431, 443, 543, 656, 823, 1062
HpyF10VI GCNNNNNNNGC 7 cut(s) 437, 449, 452, 461, 653, 659, 686
HpyF3I CTNAG 2 cut(s) 882, 1140
HpySE526I ACGT 1 cut(s) 904
Hsp92II CATG 6 cut(s) 62, 94, 171, 505, 892, 914
HspAI GCGC 2 cut(s) 404, 1144
Kzo9I GATC 4 cut(s) 571, 599, 628, 1098
LmnI GCTCC 5 cut(s) 106, 142, 566, 790, 920
Lsp1109I GCAGC 9 cut(s) 427, 439, 455, 476, 640, 659, 662, 689, 1093
LweI GCATC 2 cut(s) 542, 596
MaeI CTAG 1 cut(s) 254
MaeII ACGT 1 cut(s) 904
MaeIII GTNAC 1 cut(s) 72
MalI GATC 4 cut(s) 573, 601, 630, 1100
MboI GATC 4 cut(s) 571, 599, 628, 1098
MboII GAAGA 9 cut(s) 17, 43, 385, 388, 865, 946, 1022, 1100, 1103
MfeI CAATTG 1 cut(s) 330
MlsI TGGCCA 2 cut(s) 500, 982
MluCI AATT 8 cut(s) 96, 117, 261, 330, 524, 753, 970, 1052
MluNI TGGCCA 2 cut(s) 500, 982
MlyI GAGTC 7 cut(s) 247, 266, 322, 566, 628, 966, 1128
MmeI TCCRAC 2 cut(s) 296, 540
MnlI CCTC 9 cut(s) 37, 132, 275, 495, 499, 662, 781, 1006, 1037
Mox20I TGGCCA 2 cut(s) 500, 982
MscI TGGCCA 2 cut(s) 500, 982
MseI TTAA 3 cut(s) 894, 1046, 1160
MslI CAYNNNNRTG 1 cut(s) 548
Msp20I TGGCCA 2 cut(s) 500, 982
MspA1I CMGCKG 1 cut(s) 653
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 2 cut(s) 325, 624
MunI CAATTG 1 cut(s) 330
Mva1269I GAATGC 2 cut(s) 412, 721
MvaI CCWGG 1 cut(s) 624
MvnI CGCG 1 cut(s) 406
MwoI GCNNNNNNNGC 7 cut(s) 437, 449, 452, 461, 653, 659, 686
NciI CCSGG 1 cut(s) 325
NdeI CATATG 2 cut(s) 783, 1178
NdeII GATC 4 cut(s) 571, 599, 628, 1098
NlaIII CATG 6 cut(s) 62, 94, 171, 505, 892, 914
NlaIV GGNNCC 3 cut(s) 144, 802, 922
NspI RCATGY 1 cut(s) 914
PagI TCATGA 1 cut(s) 888
PciI ACATGT 1 cut(s) 910
PcsI WCGNNNNNNNCGW 1 cut(s) 191
PctI GAATGC 2 cut(s) 412, 721
PflFI GACNNNGTC 1 cut(s) 248
PleI GAGTC 7 cut(s) 246, 265, 321, 565, 627, 965, 1127
PpsI GAGTC 7 cut(s) 246, 265, 321, 565, 627, 965, 1127
PscI ACATGT 1 cut(s) 910
Psp6I CCWGG 1 cut(s) 622
PspGI CCWGG 1 cut(s) 622
PspN4I GGNNCC 3 cut(s) 144, 802, 922
PspPI GGNCC 4 cut(s) 62, 482, 800, 1072
PstI CTGCAG 2 cut(s) 421, 445
PstNI CAGNNNCTG 1 cut(s) 653
PsyI GACNNNGTC 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
RseI CAYNNNNRTG 1 cut(s) 548
SaqAI TTAA 3 cut(s) 894, 1046, 1160
Sau3AI GATC 4 cut(s) 571, 599, 628, 1098
Sau96I GGNCC 4 cut(s) 62, 482, 800, 1072
SchI GAGTC 7 cut(s) 247, 266, 322, 566, 628, 966, 1128
ScrFI CCNGG 2 cut(s) 325, 624
SfaNI GCATC 2 cut(s) 542, 596
SfcI CTRYAG 3 cut(s) 417, 441, 519
SinI GGWCC 1 cut(s) 800
SmiMI CAYNNNNRTG 1 cut(s) 548
Sse9I AATT 8 cut(s) 96, 117, 261, 330, 524, 753, 970, 1052
SsiI CCGC 2 cut(s) 137, 719
SspMI CTAG 1 cut(s) 254
StyD4I CCNGG 2 cut(s) 323, 622
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 5 cut(s) 11, 250, 370, 581, 595
TaiI ACGT 1 cut(s) 907
TaqI TCGA 4 cut(s) 29, 194, 491, 1117
TasI AATT 8 cut(s) 96, 117, 261, 330, 524, 753, 970, 1052
TauI GCSGC 1 cut(s) 722
Tru1I TTAA 3 cut(s) 894, 1046, 1160
Tru9I TTAA 3 cut(s) 894, 1046, 1160
TscAI CASTG 3 cut(s) 375, 484, 687
TseI GCWGC 9 cut(s) 440, 443, 452, 464, 647, 650, 653, 677, 1081
TspDTI ATGAA 3 cut(s) 107, 764, 1149
TspGWI ACGGA 1 cut(s) 406
TspRI CASTG 3 cut(s) 375, 484, 687
Tth111I GACNNNGTC 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 800
XagI CCTNNNNNAGG 1 cut(s) 736
XapI RAATTY 3 cut(s) 117, 970, 1052
XceI RCATGY 1 cut(s) 914
XmiI GTMKAC 1 cut(s) 867
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.