AT5G47440

Plant pleckstrin homology-like region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011081
Physical Location & Seq
Reverse (-)
19243531 .. 19245648
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47440.1

Sequence Viewer

Length: 1221 bp
ATGGAAGGTGGGTTTTATTCCGATTGGAATGATAGTTCCTCGTCGTTATTCGGATCAGAGAATCCGGAGCACGAGTTGGAGGAAGGAAATGTAAGAAGTGAAGAGATTGTCTCTCAGATACCTCAGCCTCAGACACCAAGGGAGCCAATGAAGTTTCTATCCAGATCATGGAGTCTATCTGCTTCTGAAATCTCCAAAGCTTTGGCGCAGAAACAGAGACAACAGCGAGATCTGTTTTCTGTTTCCCAGAACAGTCCTAGAGGCTTCTTCCAAGATGTTGCTGCAGATCCACTCATGGCAGAGAATATCATGAACTCAGCTGGAACCCGTAGATCAGGGAGATTATCAAAGTGGTTTCACCACAAACAACACACCAACCCAAGCACCATGAGGATTCCGAGGAAGAAAGATAAAGCGCGTGTACAGAAAGCCCATGTTCACTCAGCTGTGTCCATTGCAGCTCTGGCAGCTGGGTTAGCATCTGTGACTTCTGAGGAAAGCTGCAGCAAAGAGTCATGCTCCATGATGGCACTGGCTCTAGCCTCAGCAACAGAGCTACTGGCTTCACACTGCATTGACATGGCTGAGCAAGCAGGCGCTGATCACACCTGTGTTGCTTCCACGGTCAGGTCTTCCGTTGATATCCACAGCCCTGGCGATCTCATGACTCTCACAGCTGCGGCTGCAACTGCATTGAGAGGGGAAGCAGCTTTAAAGGTGAGGCAGCCGAAGGAATCAAGGAAGAATGCAACTATCACACCTTGTGAAAGGAGCTTCTCAGACTCTCACTGGCCCGGCGAAAATTGTCAGTTTAGATTGGAGGAACCAAACCTTCCTTTAGAGGGCGAACTGGTGCAATGTGCACGAAATGGATTGCAGCGAAATAAGCGAGTTTGTGTCTATATCAACAAGAAGTCTCAGGTCATGATCAAACTCAAAAGCAAACATGTTGGAGGGGCATTCTCCAAGAAGATCAAATGTGTTGTTTATGGAGTCTGCGACGAGATATCTGCATGGCCTTGCAGGAAAGAGAGGGAAAATTCCGAAGAAGTCTATTTTGGTCTGAAAACAGGACAGGGTCTTTTAGAGTTCAAGTGCAAGAGCAAGATTCAGAAGCAGAGATGGGTTGCTGGGATTCAGTCTAATCTCCGCTTAGTAAGTTGCCTCGAGGCTGCCAAATGCTCTCTGGAATCTCTGAGTCTCAGCAATCGCATGCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

406

Amino Acids

44.93

Weight (kDa)

9.07

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 43 - 114 1.3e-11 Auxin canalisation
Auxin_canalis PF05703 115 - 257 6.5e-41 Auxin canalisation
PH_2 PF08458 283 - 385 8.2e-38 Plant pleckstrin homology-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17350 AT5G47440
fragaria_vesca FvH4_5g19120 FvH4_5g19120
malus_domestica MD06G1056800.v1.1
prunus_persica Prupe.5G067500_v2.0.a1 Prupe.5G067500_v2.0.a1 Prupe.5G067500_v2.0.a1
pyrus_communis pycom06g04740
rosa_chinensis RchiOBHm_Chr7g0203601
rosa_laevigata RLG00000003515
rosa_multiflora Rmu_sc0010675.1_g000003
rosa_roxburghii Rroxscaffold_3G00253650
rosa_rugosa Rorug07G0077200 Rorug07G0077300
rosa_samantha Rh7AG207000 Rh7BG206500 Rh7CG219600 Rh7DG214200
rosa_wichuraiana Rw7G018060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1166
AccB7I CCANNNNNTGG 1 cut(s) 168
AccII CGCG 1 cut(s) 418
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 2 cut(s) 680, 1150
AclWI GGATC 2 cut(s) 61, 281
AcsI RAATTY 1 cut(s) 1039
AdeI CACNNNGTG 1 cut(s) 764
AfaI GTAC 1 cut(s) 423
AfiI CCNNNNNNNGG 3 cut(s) 168, 627, 842
AflIII ACRYGT 1 cut(s) 946
AgsI TTSAA 1 cut(s) 1093
AjnI CCWGG 1 cut(s) 652
AjuI GAANNNNNNNTTGG 2 cut(s) 1041, 1073
AleI CACNNNNGTG 1 cut(s) 609
AloI GAACNNNNNNTCC 2 cut(s) 19, 51
Alw21I GWGCWC 2 cut(s) 72, 865
Alw26I GTCTC 4 cut(s) 115, 211, 921, 1205
Alw44I GTGCAC 1 cut(s) 861
AlwI GGATC 2 cut(s) 61, 281
AlwNI CAGNNNCTG 1 cut(s) 599
Ama87I CYCGRG 1 cut(s) 1166
Aor13HI TCCGGA 1 cut(s) 64
AoxI GGCC 2 cut(s) 791, 1016
ApaLI GTGCAC 1 cut(s) 861
ApoI RAATTY 1 cut(s) 1039
AspLEI GCGC 3 cut(s) 208, 418, 599
AspS9I GGNCC 1 cut(s) 792
AsuC2I CCSGG 1 cut(s) 795
AsuHPI GGTGA 2 cut(s) 350, 730
AvaI CYCGRG 1 cut(s) 1166
BaeGI GKGCMC 1 cut(s) 865
BauI CACGAG 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 624
Bbv12I GWGCWC 2 cut(s) 72, 865
BbvCI CCTCAGC 2 cut(s) 123, 544
BccI CCATC 2 cut(s) 520, 1116
BcgI CGANNNNNNTGC 2 cut(s) 992, 1026
BciT130I CCWGG 1 cut(s) 654
BclI TGATCA 2 cut(s) 601, 927
BcnI CCSGG 1 cut(s) 795
BcoDI GTCTC 4 cut(s) 115, 211, 921, 1205
BfaI CTAG 2 cut(s) 258, 539
BfmI CTRYAG 2 cut(s) 282, 502
BfoI RGCGCY 1 cut(s) 600
BglII AGATCT 1 cut(s) 229
BlpI GCTNAGC 1 cut(s) 585
Bme1390I CCNGG 2 cut(s) 654, 795
BmeT110I CYCGRG 1 cut(s) 1166
BmgT120I GGNCC 1 cut(s) 792
BmiI GGNNCC 3 cut(s) 144, 325, 825
BmrFI CCNGG 2 cut(s) 654, 795
BmsI GCATC 1 cut(s) 488
BpiI GAAGAC 1 cut(s) 624
BplI GAGNNNNNCTC 4 cut(s) 95, 127, 503, 535
Bpu10I CCTNAGC 2 cut(s) 123, 544
Bpu1102I GCTNAGC 1 cut(s) 585
BpuMI CCSGG 1 cut(s) 795
BsaJI CCNNGG 4 cut(s) 137, 398, 621, 652
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 627, 842
Bse1I ACTGG 4 cut(s) 537, 564, 794, 855
Bse3DI GCAATG 2 cut(s) 453, 863
BseAI TCCGGA 1 cut(s) 64
BseBI CCWGG 1 cut(s) 654
BseDI CCNNGG 4 cut(s) 137, 398, 621, 652
BseLI CCNNNNNNNGG 3 cut(s) 168, 627, 842
BseMI GCAATG 2 cut(s) 453, 863
BseNI ACTGG 4 cut(s) 537, 564, 794, 855
BseSI GKGCMC 1 cut(s) 865
BseYI CCCAGC 2 cut(s) 470, 1130
Bsh1236I CGCG 1 cut(s) 418
BshFI GGCC 2 cut(s) 793, 1018
BsiHKAI GWGCWC 2 cut(s) 72, 865
BsiHKCI CYCGRG 1 cut(s) 1166
BsiSI CCGG 2 cut(s) 65, 795
BslI CCNNNNNNNGG 3 cut(s) 168, 627, 842
BsmAI GTCTC 4 cut(s) 115, 211, 921, 1205
BsmI GAATGC 2 cut(s) 751, 959
BsnI GGCC 2 cut(s) 793, 1018
BsoBI CYCGRG 1 cut(s) 1166
Bsp1286I GDGCHC 2 cut(s) 72, 865
Bsp13I TCCGGA 1 cut(s) 64
Bsp1407I TGTACA 1 cut(s) 421
Bsp143I GATC 9 cut(s) 53, 164, 229, 286, 332, 601, 658, 927, 972
Bsp1720I GCTNAGC 1 cut(s) 585
BspACI CCGC 2 cut(s) 680, 1150
BspANI GGCC 2 cut(s) 793, 1018
BspEI TCCGGA 1 cut(s) 64
BspFNI CGCG 1 cut(s) 418
BspHI TCATGA 3 cut(s) 309, 663, 924
BspLI GGNNCC 3 cut(s) 144, 325, 825
BspMAI CTGCAG 2 cut(s) 286, 506
BspPI GGATC 2 cut(s) 61, 281
BsrDI GCAATG 2 cut(s) 453, 863
BsrGI TGTACA 1 cut(s) 421
BsrI ACTGG 4 cut(s) 537, 564, 794, 855
BssECI CCNNGG 4 cut(s) 137, 398, 621, 652
BssMI GATC 9 cut(s) 53, 164, 229, 286, 332, 601, 658, 927, 972
BssSI CACGAG 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 137
Bst2BI CACGAG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 2 cut(s) 254, 625
Bst6I CTCTTC 1 cut(s) 96
BstAUI TGTACA 1 cut(s) 421
BstC8I GCNNGC 3 cut(s) 591, 595, 1214
BstDSI CCRYGG 1 cut(s) 621
BstFNI CGCG 1 cut(s) 418
BstH2I RGCGCY 1 cut(s) 600
BstHHI GCGC 3 cut(s) 208, 418, 599
BstKTI GATC 9 cut(s) 56, 167, 232, 289, 335, 604, 661, 930, 975
BstMAI GTCTC 4 cut(s) 115, 211, 921, 1205
BstMBI GATC 9 cut(s) 53, 164, 229, 286, 332, 601, 658, 927, 972
BstMWI GCNNNNNNNGC 7 cut(s) 464, 467, 476, 590, 683, 689, 886
BstNI CCWGG 1 cut(s) 654
BstNSI RCATGY 2 cut(s) 950, 1216
BstSCI CCNGG 2 cut(s) 652, 793
BstSFI CTRYAG 2 cut(s) 282, 502
BstSLI GKGCMC 1 cut(s) 865
BstUI CGCG 1 cut(s) 418
BstV2I GAAGAC 1 cut(s) 624
BstX2I RGATCY 2 cut(s) 229, 286
BstXI CCANNNNNNTGG 2 cut(s) 202, 653
BstYI RGATCY 2 cut(s) 229, 286
BsuRI GGCC 2 cut(s) 793, 1018
BtgI CCRYGG 1 cut(s) 621
BtsI GCAGTG 1 cut(s) 568
BtsIMutI CAGTG 3 cut(s) 530, 568, 787
Cac8I GCNNGC 3 cut(s) 591, 595, 1214
CaiI CAGNNNCTG 1 cut(s) 599
CciI TCATGA 3 cut(s) 309, 663, 924
CfoI GCGC 3 cut(s) 208, 418, 599
Cfr13I GGNCC 1 cut(s) 792
Csp6I GTAC 1 cut(s) 422
CviQI GTAC 1 cut(s) 422
DpnI GATC 9 cut(s) 55, 166, 231, 288, 334, 603, 660, 929, 974
DpnII GATC 9 cut(s) 53, 164, 229, 286, 332, 601, 658, 927, 972
DraI TTTAAA 1 cut(s) 714
DraIII CACNNNGTG 1 cut(s) 764
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 137
Eco32I GATATC 2 cut(s) 643, 1008
Eco88I CYCGRG 1 cut(s) 1166
EcoRII CCWGG 1 cut(s) 652
EcoRV GATATC 2 cut(s) 643, 1008
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
FbaI TGATCA 2 cut(s) 601, 927
FspBI CTAG 2 cut(s) 258, 539
GlaI GCGC 3 cut(s) 207, 417, 598
GsaI CCCAGC 2 cut(s) 474, 1134
HaeII RGCGCY 1 cut(s) 600
HaeIII GGCC 2 cut(s) 793, 1018
HapII CCGG 2 cut(s) 65, 795
HhaI GCGC 3 cut(s) 208, 418, 599
Hin6I GCGC 3 cut(s) 206, 416, 597
HinP1I GCGC 3 cut(s) 206, 416, 597
HindIII AAGCTT 1 cut(s) 198
HpaII CCGG 2 cut(s) 65, 795
HphI GGTGA 2 cut(s) 350, 730
Hpy166II GTNNAC 3 cut(s) 422, 439, 863
Hpy188III TCNNGA 6 cut(s) 65, 162, 310, 664, 925, 1187
Hpy8I GTNNAC 3 cut(s) 422, 439, 863
Hpy99I CGWCG 2 cut(s) 46, 1004
HpyAV CCTTC 3 cut(s) 77, 724, 842
HpyCH4III ACNGT 2 cut(s) 254, 625
HpyF10VI GCNNNNNNNGC 7 cut(s) 464, 467, 476, 590, 683, 689, 886
HspAI GCGC 3 cut(s) 206, 416, 597
Kpn2I TCCGGA 1 cut(s) 64
Ksp22I TGATCA 2 cut(s) 601, 927
Kzo9I GATC 9 cut(s) 53, 164, 229, 286, 332, 601, 658, 927, 972
LmnI GCTCC 4 cut(s) 67, 142, 524, 771
LweI GCATC 1 cut(s) 488
MaeI CTAG 2 cut(s) 258, 539
MaeIII GTNAC 1 cut(s) 484
MalI GATC 9 cut(s) 55, 166, 231, 288, 334, 603, 660, 929, 974
MboI GATC 9 cut(s) 53, 164, 229, 286, 332, 601, 658, 927, 972
MboII GAAGA 7 cut(s) 113, 259, 415, 624, 754, 982, 1058
MflI RGATCY 2 cut(s) 229, 286
MhlI GDGCHC 2 cut(s) 72, 865
MluCI AATT 2 cut(s) 802, 1039
MlyI GAGTC 6 cut(s) 181, 521, 661, 776, 1002, 1207
MmeI TCCRAC 2 cut(s) 57, 931
MroI TCCGGA 1 cut(s) 64
MseI TTAA 1 cut(s) 713
MslI CAYNNNNRTG 2 cut(s) 578, 609
MspA1I CMGCKG 4 cut(s) 320, 446, 470, 677
MspI CCGG 2 cut(s) 65, 795
MspR9I CCNGG 2 cut(s) 654, 795
Mva1269I GAATGC 2 cut(s) 751, 959
MvaI CCWGG 1 cut(s) 654
MvnI CGCG 1 cut(s) 418
MwoI GCNNNNNNNGC 7 cut(s) 464, 467, 476, 590, 683, 689, 886
NciI CCSGG 1 cut(s) 795
NdeII GATC 9 cut(s) 53, 164, 229, 286, 332, 601, 658, 927, 972
NlaIV GGNNCC 3 cut(s) 144, 325, 825
NmuCI GTSAC 1 cut(s) 484
NspI RCATGY 2 cut(s) 950, 1216
OliI CACNNNNGTG 1 cut(s) 609
PaeI GCATGC 1 cut(s) 1216
PaeR7I CTCGAG 1 cut(s) 1166
PagI TCATGA 3 cut(s) 309, 663, 924
PciI ACATGT 1 cut(s) 946
PctI GAATGC 2 cut(s) 751, 959
PfeI GAWTC 6 cut(s) 61, 394, 734, 1108, 1135, 1190
PflFI GACNNNGTC 1 cut(s) 1077
PflMI CCANNNNNTGG 1 cut(s) 168
PleI GAGTC 6 cut(s) 180, 520, 661, 776, 1001, 1206
PpsI GAGTC 6 cut(s) 180, 520, 661, 776, 1001, 1206
PscI ACATGT 1 cut(s) 946
Psp6I CCWGG 1 cut(s) 652
PspFI CCCAGC 2 cut(s) 470, 1130
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 3 cut(s) 144, 325, 825
PspPI GGNCC 1 cut(s) 792
PspXI VCTCGAGB 1 cut(s) 1166
PstI CTGCAG 2 cut(s) 286, 506
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 2 cut(s) 229, 286
PsyI GACNNNGTC 1 cut(s) 1077
PvuII CAGCTG 4 cut(s) 320, 446, 470, 677
RsaI GTAC 1 cut(s) 423
RsaNI GTAC 1 cut(s) 422
RseI CAYNNNNRTG 2 cut(s) 578, 609
SaqAI TTAA 1 cut(s) 713
Sau3AI GATC 9 cut(s) 53, 164, 229, 286, 332, 601, 658, 927, 972
Sau96I GGNCC 1 cut(s) 792
SchI GAGTC 6 cut(s) 181, 521, 661, 776, 1002, 1207
ScrFI CCNGG 2 cut(s) 654, 795
SduI GDGCHC 2 cut(s) 72, 865
SfaNI GCATC 1 cut(s) 488
SfcI CTRYAG 2 cut(s) 282, 502
Sfr274I CTCGAG 1 cut(s) 1166
SlaI CTCGAG 1 cut(s) 1166
SmiMI CAYNNNNRTG 2 cut(s) 578, 609
SmlI CTYRAG 1 cut(s) 1166
SmoI CTYRAG 1 cut(s) 1166
SphI GCATGC 1 cut(s) 1216
Sse9I AATT 2 cut(s) 802, 1039
SsiI CCGC 2 cut(s) 680, 1150
SspMI CTAG 2 cut(s) 258, 539
StyD4I CCNGG 2 cut(s) 652, 793
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 2 cut(s) 254, 625
TaqI TCGA 1 cut(s) 1167
TasI AATT 2 cut(s) 802, 1039
TatI WGTACW 1 cut(s) 421
TauI GCSGC 1 cut(s) 683
TfiI GAWTC 6 cut(s) 61, 394, 734, 1108, 1135, 1190
Tru1I TTAA 1 cut(s) 713
Tru9I TTAA 1 cut(s) 713
TscAI CASTG 3 cut(s) 537, 575, 794
TseFI GTSAC 1 cut(s) 484
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 2 cut(s) 164, 326
TspGWI ACGGA 1 cut(s) 625
TspRI CASTG 3 cut(s) 537, 575, 794
Tth111I GACNNNGTC 1 cut(s) 1077
Van91I CCANNNNNTGG 1 cut(s) 168
VneI GTGCAC 1 cut(s) 861
XapI RAATTY 1 cut(s) 1039
XceI RCATGY 2 cut(s) 950, 1216
XcmI CCANNNNNNNNNTGG 3 cut(s) 460, 529, 1183
XhoI CTCGAG 1 cut(s) 1166
XspI CTAG 2 cut(s) 258, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.