Rh7CG219600

Auxin canalisation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0011081
Physical Location & Seq
Forward (+)
20121380 .. 20125870
4491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG219600.1

Sequence Viewer

Length: 966 bp
ATGGAAGACAGTTATCATAGTTTAGCCTCGAAGATTAGTAATACAGGCGGTTCTTTGCATGGGCCAGAGAAGTTACAGGAAGCAGATGACATGAAAATTGCTCCATATATGGCTGGAATTCCTCAACCACAGACACCGCAGGAGCCTATGGAATTCTTGTCAAGGTCATGGAGTATCTCTGCTTCAGAAATCTCGAAGGCTCTCGCTAAAAAACAGAAGCAATCTAACATTCCCAAGAGTCCTGACACAGTCCTAGAATCAATTCCTTTACCACAACTGCGAGGCAAGGTCAGGAAATCTGGTACTAAACAGAGTCGGAGAACCGGGTCAATTGGAAAATGGTTCAACAATGAGTTCACTAATAGCACAGTGAAGAAGAAAGACAAGGAACGGATGGAAAGGGCGCGAGTGCATTCTGCGGTCTCCATTGCAGGAGTTGCTGCAGCCTTGGCTGCTATAATGGCAGCAGAAAACACCAGTGGCCCTCCCTCGAAAATGGCCATGTCTTTGGCATTGGCTACAGAATTGCTGGCATCACATTGCATTGAAATGGCAGAGTCGGAAGGAGCTGATCGCAACCGTCTGGCATCTACCGTCAGATCAGCCCTTGACATTCAGAGTCCTGGTGATCTTATGACCCTTACAGCAGCAGCTGCAACAGCGTTGCGAGGAGAAGCAGCACTGAAAGCAAGATTACCGAAAGAGCCGAAAAAGAATGCGGCCATTAGTCCCTATGATAGGGGAATGGCAGAAATTACTTCACCTTTGGCTTTTCATAGTCATATGGAGGAGCAGGATGGTCCCTGTGATGGAGATTTACTGCAACTTATGGGAAAAGGTATTCAACAATGGAAGAGTGTCTCTGTCTACATTAAAAAATCTCAGGTAACTGAACGGATAAATGTTATTGGAATCAGCCTCTTCCACTCTGTGCAGGACTGGAGGAGGCTTCCTGATGTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

321

Amino Acids

34.89

Weight (kDa)

9.28

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 43 - 75 1.8e-11 Auxin canalisation
Auxin_canalis PF05703 98 - 247 6.3e-49 Auxin canalisation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17350 AT5G47440
fragaria_vesca FvH4_5g19120 FvH4_5g19120
malus_domestica MD06G1056800.v1.1
prunus_persica Prupe.5G067500_v2.0.a1 Prupe.5G067500_v2.0.a1 Prupe.5G067500_v2.0.a1
pyrus_communis pycom06g04740
rosa_chinensis RchiOBHm_Chr7g0203601
rosa_laevigata RLG00000003515
rosa_multiflora Rmu_sc0010675.1_g000003
rosa_roxburghii Rroxscaffold_3G00253650
rosa_rugosa Rorug07G0077200 Rorug07G0077300
rosa_samantha Rh7AG207000 Rh7BG206500 Rh7CG219600 Rh7DG214200
rosa_wichuraiana Rw7G018060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 867
AccII CGCG 1 cut(s) 406
AciI CCGC 4 cut(s) 48, 137, 419, 719
AcoI YGGCCR 2 cut(s) 498, 720
AcsI RAATTY 2 cut(s) 117, 152
AcuI CTGAAG 1 cut(s) 168
AdeI CACNNNGTG 1 cut(s) 931
AfaI GTAC 1 cut(s) 304
AfiI CCNNNNNNNGG 2 cut(s) 738, 809
AgsI TTSAA 3 cut(s) 346, 548, 845
AjnI CCWGG 1 cut(s) 622
AluBI AGCT 2 cut(s) 569, 653
AluI AGCT 2 cut(s) 569, 653
Alw26I GTCTC 2 cut(s) 427, 865
AlwNI CAGNNNCTG 1 cut(s) 653
AoxI GGCC 4 cut(s) 62, 481, 498, 720
ApeKI GCWGC 8 cut(s) 440, 443, 452, 464, 647, 650, 653, 677
ApoI RAATTY 2 cut(s) 117, 152
Asp700I GAANNNNTTC 1 cut(s) 261
AspLEI GCGC 1 cut(s) 406
AspS9I GGNCC 3 cut(s) 62, 482, 800
AsuC2I CCSGG 1 cut(s) 325
AsuHPI GGTGA 2 cut(s) 638, 753
AvaII GGWCC 1 cut(s) 800
BalI TGGCCA 1 cut(s) 500
BarI GAAGNNNNNNTAC 2 cut(s) 166, 198
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 8 cut(s) 427, 439, 455, 476, 640, 659, 662, 689
BccI CCATC 3 cut(s) 388, 791, 803
BciT130I CCWGG 1 cut(s) 624
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 427, 865
BfaI CTAG 1 cut(s) 254
BfmI CTRYAG 2 cut(s) 441, 519
BisI GCNGC 9 cut(s) 441, 444, 453, 465, 648, 651, 654, 678, 720
BlsI GCNGC 9 cut(s) 442, 445, 454, 466, 649, 652, 655, 679, 721
Bme1390I CCNGG 2 cut(s) 325, 624
Bme18I GGWCC 1 cut(s) 800
BmgT120I GGNCC 3 cut(s) 62, 482, 800
BmiI GGNNCC 2 cut(s) 144, 802
BmrFI CCNGG 2 cut(s) 325, 624
BmsI GCATC 2 cut(s) 542, 596
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 961
BpuMI CCSGG 1 cut(s) 325
BsaI GGTCTC 1 cut(s) 427
BsaJI CCNNGG 1 cut(s) 447
Bsc4I CCNNNNNNNGG 2 cut(s) 738, 809
Bse1I ACTGG 2 cut(s) 477, 944
Bse3DI GCAATG 2 cut(s) 426, 538
BseBI CCWGG 1 cut(s) 624
BseDI CCNNGG 1 cut(s) 447
BseGI GGATG 2 cut(s) 399, 802
BseLI CCNNNNNNNGG 2 cut(s) 738, 809
BseMI GCAATG 2 cut(s) 426, 538
BseMII CTCAG 1 cut(s) 896
BseNI ACTGG 2 cut(s) 477, 944
BseRI GAGGAG 3 cut(s) 684, 803, 958
BseXI GCAGC 8 cut(s) 427, 439, 455, 476, 640, 659, 662, 689
BsgI GTGCAG 1 cut(s) 953
Bsh1236I CGCG 1 cut(s) 406
BshFI GGCC 4 cut(s) 64, 483, 500, 722
BsiSI CCGG 1 cut(s) 324
BslFI GGGAC 2 cut(s) 714, 786
BslI CCNNNNNNNGG 2 cut(s) 738, 809
BsmAI GTCTC 2 cut(s) 427, 865
BsmFI GGGAC 2 cut(s) 714, 786
BsmI GAATGC 2 cut(s) 412, 721
BsnI GGCC 4 cut(s) 64, 483, 500, 722
Bso31I GGTCTC 1 cut(s) 427
Bsp143I GATC 3 cut(s) 571, 599, 628
BspACI CCGC 4 cut(s) 48, 137, 419, 719
BspANI GGCC 4 cut(s) 64, 483, 500, 722
BspCNI CTCAG 1 cut(s) 895
BspFNI CGCG 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 144, 802
BspMAI CTGCAG 1 cut(s) 445
BspTNI GGTCTC 1 cut(s) 427
BsrDI GCAATG 2 cut(s) 426, 538
BsrI ACTGG 2 cut(s) 477, 944
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 3 cut(s) 571, 599, 628
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 624
Bst4CI ACNGT 5 cut(s) 11, 250, 370, 581, 595
Bst6I CTCTTC 2 cut(s) 848, 926
BstAPI GCANNNNNTGC 2 cut(s) 437, 653
BstC8I GCNNGC 1 cut(s) 531
BstDEI CTNAG 1 cut(s) 882
BstENI CCTNNNNNAGG 1 cut(s) 736
BstF5I GGATG 2 cut(s) 399, 802
BstFNI CGCG 1 cut(s) 406
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 3 cut(s) 574, 602, 631
BstMAI GTCTC 2 cut(s) 427, 865
BstMBI GATC 3 cut(s) 571, 599, 628
BstMWI GCNNNNNNNGC 7 cut(s) 437, 449, 452, 461, 653, 659, 686
BstNI CCWGG 1 cut(s) 624
BstSCI CCNGG 2 cut(s) 323, 622
BstSFI CTRYAG 2 cut(s) 441, 519
BstUI CGCG 1 cut(s) 406
BstV1I GCAGC 8 cut(s) 427, 439, 455, 476, 640, 659, 662, 689
BstV2I GAAGAC 1 cut(s) 12
BstXI CCANNNNNNTGG 1 cut(s) 508
BsuRI GGCC 4 cut(s) 64, 483, 500, 722
BtsCI GGATG 2 cut(s) 399, 802
BtsIMutI CAGTG 3 cut(s) 375, 484, 680
Cac8I GCNNGC 1 cut(s) 531
CaiI CAGNNNCTG 1 cut(s) 653
CfoI GCGC 1 cut(s) 406
Cfr13I GGNCC 3 cut(s) 62, 482, 800
Csp6I GTAC 1 cut(s) 303
CviAII CATG 4 cut(s) 59, 91, 168, 502
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 1 cut(s) 882
DpnI GATC 3 cut(s) 573, 601, 630
DpnII GATC 3 cut(s) 571, 599, 628
DraIII CACNNNGTG 1 cut(s) 931
EaeI YGGCCR 2 cut(s) 498, 720
Eam1104I CTCTTC 2 cut(s) 848, 926
EarI CTCTTC 2 cut(s) 848, 926
Eco130I CCWWGG 1 cut(s) 447
Eco31I GGTCTC 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 800
Eco57I CTGAAG 1 cut(s) 168
EcoNI CCTNNNNNAGG 1 cut(s) 736
EcoRI GAATTC 2 cut(s) 117, 152
EcoRII CCWGG 1 cut(s) 622
EcoT14I CCWWGG 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 4 cut(s) 62, 94, 171, 505
FaqI GGGAC 2 cut(s) 714, 786
FatI CATG 4 cut(s) 58, 90, 167, 501
FauNDI CATATG 1 cut(s) 783
FblI GTMKAC 1 cut(s) 867
Fnu4HI GCNGC 9 cut(s) 441, 444, 453, 465, 648, 651, 654, 678, 720
FokI GGATG 2 cut(s) 406, 809
Fsp4HI GCNGC 9 cut(s) 441, 444, 453, 465, 648, 651, 654, 678, 720
FspBI CTAG 1 cut(s) 254
GlaI GCGC 1 cut(s) 405
GluI GCNGC 9 cut(s) 441, 444, 453, 465, 648, 651, 654, 678, 720
GsuI CTGGAG 1 cut(s) 961
HaeIII GGCC 4 cut(s) 64, 483, 500, 722
HapII CCGG 1 cut(s) 324
HhaI GCGC 1 cut(s) 406
Hin1II CATG 4 cut(s) 62, 94, 171, 505
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HinfI GANTC 6 cut(s) 238, 257, 313, 557, 619, 912
HpaII CCGG 1 cut(s) 324
HphI GGTGA 2 cut(s) 638, 753
Hpy166II GTNNAC 2 cut(s) 357, 868
Hpy188I TCNGA 5 cut(s) 187, 318, 562, 599, 618
Hpy188III TCNNGA 4 cut(s) 193, 242, 292, 953
Hpy8I GTNNAC 2 cut(s) 357, 868
HpyAV CCTTC 2 cut(s) 190, 557
HpyCH4III ACNGT 5 cut(s) 11, 250, 370, 581, 595
HpyCH4V TGCA 8 cut(s) 58, 412, 431, 443, 543, 656, 823, 934
HpyF10VI GCNNNNNNNGC 7 cut(s) 437, 449, 452, 461, 653, 659, 686
HpyF3I CTNAG 1 cut(s) 882
Hsp92II CATG 4 cut(s) 62, 94, 171, 505
HspAI GCGC 1 cut(s) 404
Kzo9I GATC 3 cut(s) 571, 599, 628
LmnI GCTCC 4 cut(s) 106, 142, 566, 790
Lsp1109I GCAGC 8 cut(s) 427, 439, 455, 476, 640, 659, 662, 689
LweI GCATC 2 cut(s) 542, 596
MaeI CTAG 1 cut(s) 254
MaeIII GTNAC 2 cut(s) 72, 886
MalI GATC 3 cut(s) 573, 601, 630
MboI GATC 3 cut(s) 571, 599, 628
MboII GAAGA 6 cut(s) 17, 43, 385, 388, 865, 913
MfeI CAATTG 1 cut(s) 330
MlsI TGGCCA 1 cut(s) 500
MluCI AATT 7 cut(s) 96, 117, 152, 261, 330, 524, 753
MluNI TGGCCA 1 cut(s) 500
MlyI GAGTC 4 cut(s) 247, 322, 566, 628
MmeI TCCRAC 2 cut(s) 296, 540
Mox20I TGGCCA 1 cut(s) 500
MroXI GAANNNNTTC 1 cut(s) 261
MscI TGGCCA 1 cut(s) 500
MseI TTAA 1 cut(s) 873
MslI CAYNNNNRTG 1 cut(s) 548
Msp20I TGGCCA 1 cut(s) 500
MspA1I CMGCKG 1 cut(s) 653
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 2 cut(s) 325, 624
MunI CAATTG 1 cut(s) 330
Mva1269I GAATGC 2 cut(s) 412, 721
MvaI CCWGG 1 cut(s) 624
MvnI CGCG 1 cut(s) 406
MwoI GCNNNNNNNGC 7 cut(s) 437, 449, 452, 461, 653, 659, 686
NciI CCSGG 1 cut(s) 325
NdeI CATATG 1 cut(s) 783
NdeII GATC 3 cut(s) 571, 599, 628
NlaIII CATG 4 cut(s) 62, 94, 171, 505
NlaIV GGNNCC 2 cut(s) 144, 802
PctI GAATGC 2 cut(s) 412, 721
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 2 cut(s) 257, 912
PflFI GACNNNGTC 1 cut(s) 248
PkrI GCNGC 9 cut(s) 442, 445, 454, 466, 649, 652, 655, 679, 721
PleI GAGTC 4 cut(s) 246, 321, 565, 627
PpsI GAGTC 4 cut(s) 246, 321, 565, 627
Psp6I CCWGG 1 cut(s) 622
PspGI CCWGG 1 cut(s) 622
PspN4I GGNNCC 2 cut(s) 144, 802
PspPI GGNCC 3 cut(s) 62, 482, 800
PstI CTGCAG 1 cut(s) 445
PstNI CAGNNNCTG 1 cut(s) 653
PsyI GACNNNGTC 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
RseI CAYNNNNRTG 1 cut(s) 548
SaqAI TTAA 1 cut(s) 873
SatI GCNGC 9 cut(s) 441, 444, 453, 465, 648, 651, 654, 678, 720
Sau3AI GATC 3 cut(s) 571, 599, 628
Sau96I GGNCC 3 cut(s) 62, 482, 800
SchI GAGTC 4 cut(s) 247, 322, 566, 628
ScrFI CCNGG 2 cut(s) 325, 624
SetI ASST 7 cut(s) 167, 291, 571, 655, 766, 841, 888
SfaNI GCATC 2 cut(s) 542, 596
SfcI CTRYAG 2 cut(s) 441, 519
SinI GGWCC 1 cut(s) 800
SmiMI CAYNNNNRTG 1 cut(s) 548
Sse9I AATT 7 cut(s) 96, 117, 152, 261, 330, 524, 753
SsiI CCGC 4 cut(s) 48, 137, 419, 719
SspMI CTAG 1 cut(s) 254
StyD4I CCNGG 2 cut(s) 323, 622
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 5 cut(s) 11, 250, 370, 581, 595
TaqI TCGA 3 cut(s) 29, 194, 491
TasI AATT 7 cut(s) 96, 117, 152, 261, 330, 524, 753
TauI GCSGC 1 cut(s) 722
TfiI GAWTC 2 cut(s) 257, 912
Tru1I TTAA 1 cut(s) 873
Tru9I TTAA 1 cut(s) 873
TscAI CASTG 3 cut(s) 375, 484, 687
TseI GCWGC 8 cut(s) 440, 443, 452, 464, 647, 650, 653, 677
TspDTI ATGAA 2 cut(s) 107, 764
TspGWI ACGGA 2 cut(s) 406, 910
TspRI CASTG 3 cut(s) 375, 484, 687
Tth111I GACNNNGTC 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 800
XagI CCTNNNNNAGG 1 cut(s) 736
XapI RAATTY 2 cut(s) 117, 152
XmiI GTMKAC 1 cut(s) 867
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.