Prupe.5G067500_v2.0.a1

Auxin canalisation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011081
Physical Location & Seq
Reverse (-)
8162243 .. 8167111
4869 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G067500.3

Sequence Viewer

Length: 1170 bp
ATGGAAAGTGGTTATTTTTCAGCTTGGAAGACTGCTGGTTCTTTGCATGGGCTACAACATGTAGAGGAAGCTGAGGAGATGAAAATAGTGCCCACCTTGCCTGCAATCCCTCAGCCACAAACACCACAGGAGCCTATGGAGTTTTTGTCAAGGTCATGGAGTCTTTCTGCTTCAGAAATCTCAAAGGCTCTTGCTCAAAAGCAGAAGCAATTTTCTCTTGAAAAAAGCCCTGACAAATTCCCAGAAGCAACTGACGTGCCACAACTGACAGGAAAGATTGTAAAGTCTGTTAATAATCGGAGAACGAAGTCAATGGGCAAATGGTTCCACCATAAGGAGTTCACTAGTAGCACAGTGAAGAAGAAAGATAAGGAAAGGGTAGAAAGAGCACGAGTGCATTCTGCTGTCTCCATTGCAGGAGTTGCTGCAGCCTTGGCAGCTGTAACTGCAGCAGAAAACTCCAGTGGTTCTGGCTCAAAAACGACCATGGCTTTGGCTTTGGCTACAGAGTTGCTGGCATCACATTGCATTGAAATGGCTGAATTAGCCGGAGCTAATCATGACCGTGTGGCATCTGCTGTTAGATCAGCAGTGGACATTCAAAGTCCTGGTGACCTTATGACTCTTACAGCAGCAGCTGCTACAGCTTTGCGAGGAGAATCGGCTTTGAAATCAAGGTTACCGAAAGAAGCAAGAAAGAATGCTGCTATTAGTCCCTATGATCGGGGAATGGCTGAAATTCCTTCAGCTGGTGCTTTTTATAGTCAAGTAGAGGAGCAGGATCCTCCCTGTGCTGGAGAACTACTGCAACTTACAGGAAAAGGTGTTTTACAATGGAAACGTGTCTCTGTCTATATCAACAATAAATCTCAGGTTATAGTTAAACTCAAGCGTAAACATGTTGGAGGAGCATTCTCCAAGAAAAATAAAAGTGTTGTTTATGGAGTCTGTGATGAGACTTCTGCTTGGCCATATAAGAAAGAAAGGGAAATTTCAGAAGAGGTCTATTTCGGGCTCAAAACTGGACAGGGTCTACTAGAGTTCAAGTGCAAGAACAAGGTTCATAAGCAGAAATGGGTTGATGGGATCAAAAATCTTCTTCGTCGAGTCAACTACTTTGAAGAAACTGAGCACTCTCTGGGATTTTTAAATATCAGTAATAGTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

390

Amino Acids

42.66

Weight (kDa)

9.39

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17350 AT5G47440
fragaria_vesca FvH4_5g19120 FvH4_5g19120
malus_domestica MD06G1056800.v1.1
prunus_persica Prupe.5G067500_v2.0.a1 Prupe.5G067500_v2.0.a1 Prupe.5G067500_v2.0.a1
pyrus_communis pycom06g04740
rosa_chinensis RchiOBHm_Chr7g0203601
rosa_laevigata RLG00000003515
rosa_multiflora Rmu_sc0010675.1_g000003
rosa_roxburghii Rroxscaffold_3G00253650
rosa_rugosa Rorug07G0077200 Rorug07G0077300
rosa_samantha Rh7AG207000 Rh7BG206500 Rh7CG219600 Rh7DG214200
rosa_wichuraiana Rw7G018060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1033
AclWI GGATC 3 cut(s) 776, 789, 1094
AcoI YGGCCR 1 cut(s) 968
AcsI RAATTY 3 cut(s) 236, 738, 990
AcuI CTGAAG 2 cut(s) 156, 729
AfiI CCNNNNNNNGG 4 cut(s) 334, 723, 749, 794
AflIII ACRYGT 3 cut(s) 58, 841, 898
AgsI TTSAA 6 cut(s) 221, 533, 602, 670, 1045, 1121
AhlI ACTAGT 1 cut(s) 344
AjiI CACGTC 1 cut(s) 256
AjnI CCWGG 1 cut(s) 607
AluBI AGCT 7 cut(s) 23, 71, 440, 554, 638, 647, 749
AluI AGCT 7 cut(s) 23, 71, 440, 554, 638, 647, 749
Alw21I GWGCWC 2 cut(s) 391, 1134
Alw26I GTCTC 3 cut(s) 412, 850, 950
AlwI GGATC 3 cut(s) 776, 789, 1094
AlwNI CAGNNNCTG 1 cut(s) 638
AoxI GGCC 1 cut(s) 968
ApeKI GCWGC 8 cut(s) 425, 428, 437, 449, 632, 635, 638, 704
ApoI RAATTY 3 cut(s) 236, 738, 990
ArsI GACNNNNNNTTYG 2 cut(s) 475, 507
AsuHPI GGTGA 1 cut(s) 623
BaeGI GKGCMC 1 cut(s) 93
BalI TGGCCA 1 cut(s) 970
BamHI GGATCC 1 cut(s) 781
BanII GRGCYC 1 cut(s) 1017
BauI CACGAG 1 cut(s) 390
BbsI GAAGAC 1 cut(s) 35
Bbv12I GWGCWC 2 cut(s) 391, 1134
BbvCI CCTCAGC 2 cut(s) 72, 111
BbvI GCAGC 8 cut(s) 412, 440, 449, 461, 625, 644, 647, 691
BccI CCATC 1 cut(s) 1076
BciT130I CCWGG 1 cut(s) 609
BcoDI GTCTC 3 cut(s) 412, 850, 950
BcuI ACTAGT 1 cut(s) 344
BfaI CTAG 2 cut(s) 345, 1037
BfmI CTRYAG 4 cut(s) 426, 447, 504, 642
BisI GCNGC 8 cut(s) 426, 429, 438, 450, 633, 636, 639, 705
BlsI GCNGC 8 cut(s) 427, 430, 439, 451, 634, 637, 640, 706
Bme1390I CCNGG 1 cut(s) 609
BmgBI CACGTC 1 cut(s) 256
BmiI GGNNCC 3 cut(s) 132, 326, 783
BmrFI CCNGG 1 cut(s) 609
BmsI GCATC 2 cut(s) 527, 581
BpiI GAAGAC 1 cut(s) 35
BpmI CTGGAG 2 cut(s) 445, 816
Bpu10I CCTNAGC 2 cut(s) 72, 111
BpuEI CTTGAG 1 cut(s) 872
BsaJI CCNNGG 2 cut(s) 432, 486
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 4 cut(s) 334, 723, 749, 794
Bse1I ACTGG 2 cut(s) 462, 1027
Bse3DI GCAATG 2 cut(s) 411, 523
BseBI CCWGG 1 cut(s) 609
BseDI CCNNGG 2 cut(s) 432, 486
BseLI CCNNNNNNNGG 4 cut(s) 334, 723, 749, 794
BseMI GCAATG 2 cut(s) 411, 523
BseMII CTCAG 4 cut(s) 63, 125, 884, 1119
BseNI ACTGG 2 cut(s) 462, 1027
BseRI GAGGAG 4 cut(s) 89, 669, 788, 921
BseSI GKGCMC 1 cut(s) 93
BseXI GCAGC 8 cut(s) 412, 440, 449, 461, 625, 644, 647, 691
BshFI GGCC 1 cut(s) 970
BsiHKAI GWGCWC 2 cut(s) 391, 1134
BsiSI CCGG 1 cut(s) 549
BslFI GGGAC 1 cut(s) 699
BslI CCNNNNNNNGG 4 cut(s) 334, 723, 749, 794
BsmAI GTCTC 3 cut(s) 412, 850, 950
BsmFI GGGAC 1 cut(s) 699
BsmI GAATGC 3 cut(s) 397, 706, 911
BsnI GGCC 1 cut(s) 970
Bsp1286I GDGCHC 4 cut(s) 93, 391, 1017, 1134
Bsp143I GATC 4 cut(s) 584, 721, 781, 1086
Bsp19I CCATGG 1 cut(s) 486
BspANI GGCC 1 cut(s) 970
BspCNI CTCAG 4 cut(s) 64, 124, 883, 1120
BspHI TCATGA 1 cut(s) 559
BspLI GGNNCC 3 cut(s) 132, 326, 783
BspMAI CTGCAG 2 cut(s) 430, 451
BspPI GGATC 3 cut(s) 776, 789, 1094
BsrDI GCAATG 2 cut(s) 411, 523
BsrI ACTGG 2 cut(s) 462, 1027
BssECI CCNNGG 2 cut(s) 432, 486
BssMI GATC 4 cut(s) 584, 721, 781, 1086
BssSI CACGAG 1 cut(s) 390
BssT1I CCWWGG 2 cut(s) 432, 486
Bst2BI CACGAG 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 609
Bst4CI ACNGT 2 cut(s) 355, 566
Bst6I CTCTTC 1 cut(s) 993
BstAPI GCANNNNNTGC 2 cut(s) 422, 638
BstC8I GCNNGC 2 cut(s) 102, 516
BstDEI CTNAG 4 cut(s) 72, 111, 870, 1128
BstDSI CCRYGG 1 cut(s) 486
BstEII GGTNACC 2 cut(s) 611, 678
BstKTI GATC 4 cut(s) 587, 724, 784, 1089
BstMAI GTCTC 3 cut(s) 412, 850, 950
BstMBI GATC 4 cut(s) 584, 721, 781, 1086
BstMWI GCNNNNNNNGC 8 cut(s) 97, 422, 434, 437, 446, 545, 638, 644
BstNI CCWGG 1 cut(s) 609
BstNSI RCATGY 2 cut(s) 62, 902
BstPI GGTNACC 2 cut(s) 611, 678
BstSCI CCNGG 1 cut(s) 607
BstSFI CTRYAG 4 cut(s) 426, 447, 504, 642
BstSLI GKGCMC 1 cut(s) 93
BstV1I GCAGC 8 cut(s) 412, 440, 449, 461, 625, 644, 647, 691
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 781
BstXI CCANNNNNNTGG 1 cut(s) 493
BstYI RGATCY 1 cut(s) 781
BsuRI GGCC 1 cut(s) 970
BtgI CCRYGG 1 cut(s) 486
BtrI CACGTC 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 3 cut(s) 360, 469, 597
Cac8I GCNNGC 2 cut(s) 102, 516
CaiI CAGNNNCTG 1 cut(s) 638
CciI TCATGA 1 cut(s) 559
CviAII CATG 6 cut(s) 47, 59, 156, 487, 560, 899
DdeI CTNAG 4 cut(s) 72, 111, 870, 1128
DpnI GATC 4 cut(s) 586, 723, 783, 1088
DpnII GATC 4 cut(s) 584, 721, 781, 1086
DraI TTTAAA 1 cut(s) 1149
EaeI YGGCCR 1 cut(s) 968
Eam1104I CTCTTC 1 cut(s) 993
EarI CTCTTC 1 cut(s) 993
Eco130I CCWWGG 2 cut(s) 432, 486
Eco24I GRGCYC 1 cut(s) 1017
Eco57I CTGAAG 2 cut(s) 156, 729
Eco91I GGTNACC 2 cut(s) 611, 678
EcoO65I GGTNACC 2 cut(s) 611, 678
EcoRII CCWGG 1 cut(s) 607
EcoT14I CCWWGG 2 cut(s) 432, 486
EcoT38I GRGCYC 1 cut(s) 1017
ErhI CCWWGG 2 cut(s) 432, 486
FaeI CATG 6 cut(s) 50, 62, 159, 490, 563, 902
FaqI GGGAC 1 cut(s) 699
FatI CATG 6 cut(s) 46, 58, 155, 486, 559, 898
FblI GTMKAC 1 cut(s) 1033
Fnu4HI GCNGC 8 cut(s) 426, 429, 438, 450, 633, 636, 639, 705
FriOI GRGCYC 1 cut(s) 1017
Fsp4HI GCNGC 8 cut(s) 426, 429, 438, 450, 633, 636, 639, 705
FspBI CTAG 2 cut(s) 345, 1037
GluI GCNGC 8 cut(s) 426, 429, 438, 450, 633, 636, 639, 705
GsuI CTGGAG 2 cut(s) 445, 816
HaeIII GGCC 1 cut(s) 970
HapII CCGG 1 cut(s) 549
Hin1II CATG 6 cut(s) 50, 62, 159, 490, 563, 902
HincII GTYRAC 1 cut(s) 1111
HindII GTYRAC 1 cut(s) 1111
HinfI GANTC 5 cut(s) 160, 622, 659, 945, 1107
HpaII CCGG 1 cut(s) 549
HphI GGTGA 1 cut(s) 623
Hpy166II GTNNAC 5 cut(s) 342, 595, 896, 1034, 1111
Hpy188I TCNGA 3 cut(s) 175, 300, 997
Hpy188III TCNNGA 2 cut(s) 218, 560
Hpy8I GTNNAC 5 cut(s) 342, 595, 896, 1034, 1111
Hpy99I CGWCG 1 cut(s) 1107
HpyAV CCTTC 1 cut(s) 753
HpyCH4III ACNGT 2 cut(s) 355, 566
HpyCH4IV ACGT 2 cut(s) 255, 841
HpyCH4V TGCA 9 cut(s) 46, 104, 397, 416, 428, 449, 528, 808, 1050
HpyF10VI GCNNNNNNNGC 8 cut(s) 97, 422, 434, 437, 446, 545, 638, 644
HpyF3I CTNAG 4 cut(s) 72, 111, 870, 1128
HpySE526I ACGT 2 cut(s) 255, 841
Hsp92II CATG 6 cut(s) 50, 62, 159, 490, 563, 902
Kzo9I GATC 4 cut(s) 584, 721, 781, 1086
LmnI GCTCC 4 cut(s) 130, 551, 775, 908
Lsp1109I GCAGC 8 cut(s) 412, 440, 449, 461, 625, 644, 647, 691
LweI GCATC 2 cut(s) 527, 581
MaeI CTAG 2 cut(s) 345, 1037
MaeII ACGT 2 cut(s) 255, 841
MaeIII GTNAC 3 cut(s) 442, 611, 678
MalI GATC 4 cut(s) 586, 723, 783, 1088
MboI GATC 4 cut(s) 584, 721, 781, 1086
MboII GAAGA 7 cut(s) 40, 370, 373, 1010, 1088, 1091, 1133
MflI RGATCY 1 cut(s) 781
MhlI GDGCHC 4 cut(s) 93, 391, 1017, 1134
MlsI TGGCCA 1 cut(s) 970
MluCI AATT 5 cut(s) 209, 236, 542, 738, 990
MluNI TGGCCA 1 cut(s) 970
MlyI GAGTC 4 cut(s) 169, 616, 954, 1116
MmeI TCCRAC 1 cut(s) 883
MnlI CCTC 8 cut(s) 58, 67, 120, 647, 766, 795, 899, 994
Mox20I TGGCCA 1 cut(s) 970
MscI TGGCCA 1 cut(s) 970
MseI TTAA 3 cut(s) 291, 882, 1148
MslI CAYNNNNRTG 2 cut(s) 533, 564
Msp20I TGGCCA 1 cut(s) 970
MspA1I CMGCKG 3 cut(s) 440, 638, 749
MspI CCGG 1 cut(s) 549
MspR9I CCNGG 1 cut(s) 609
Mva1269I GAATGC 3 cut(s) 397, 706, 911
MvaI CCWGG 1 cut(s) 609
MwoI GCNNNNNNNGC 8 cut(s) 97, 422, 434, 437, 446, 545, 638, 644
NcoI CCATGG 1 cut(s) 486
NdeII GATC 4 cut(s) 584, 721, 781, 1086
NlaIII CATG 6 cut(s) 50, 62, 159, 490, 563, 902
NlaIV GGNNCC 3 cut(s) 132, 326, 783
NmuCI GTSAC 1 cut(s) 611
NspI RCATGY 2 cut(s) 62, 902
PagI TCATGA 1 cut(s) 559
PciI ACATGT 2 cut(s) 58, 898
PctI GAATGC 3 cut(s) 397, 706, 911
PfeI GAWTC 1 cut(s) 659
PflFI GACNNNGTC 1 cut(s) 1029
PkrI GCNGC 8 cut(s) 427, 430, 439, 451, 634, 637, 640, 706
PleI GAGTC 4 cut(s) 168, 616, 953, 1115
PpsI GAGTC 4 cut(s) 168, 616, 953, 1115
PscI ACATGT 2 cut(s) 58, 898
Psp6I CCWGG 1 cut(s) 607
PspEI GGTNACC 2 cut(s) 611, 678
PspGI CCWGG 1 cut(s) 607
PspN4I GGNNCC 3 cut(s) 132, 326, 783
PstI CTGCAG 2 cut(s) 430, 451
PstNI CAGNNNCTG 1 cut(s) 638
PsuI RGATCY 1 cut(s) 781
PsyI GACNNNGTC 1 cut(s) 1029
PvuII CAGCTG 3 cut(s) 440, 638, 749
RseI CAYNNNNRTG 2 cut(s) 533, 564
SaqAI TTAA 3 cut(s) 291, 882, 1148
SatI GCNGC 8 cut(s) 426, 429, 438, 450, 633, 636, 639, 705
Sau3AI GATC 4 cut(s) 584, 721, 781, 1086
SchI GAGTC 4 cut(s) 169, 616, 954, 1116
ScrFI CCNGG 1 cut(s) 609
SduI GDGCHC 4 cut(s) 93, 391, 1017, 1134
SfaNI GCATC 2 cut(s) 527, 581
SfcI CTRYAG 4 cut(s) 426, 447, 504, 642
SmiMI CAYNNNNRTG 2 cut(s) 533, 564
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
SpeI ACTAGT 1 cut(s) 344
Sse9I AATT 5 cut(s) 209, 236, 542, 738, 990
SspMI CTAG 2 cut(s) 345, 1037
StyD4I CCNGG 1 cut(s) 607
StyI CCWWGG 2 cut(s) 432, 486
TaaI ACNGT 2 cut(s) 355, 566
TaiI ACGT 2 cut(s) 258, 844
TaqI TCGA 1 cut(s) 1105
TasI AATT 5 cut(s) 209, 236, 542, 738, 990
TfiI GAWTC 1 cut(s) 659
Tru1I TTAA 3 cut(s) 291, 882, 1148
Tru9I TTAA 3 cut(s) 291, 882, 1148
TscAI CASTG 3 cut(s) 360, 469, 597
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 8 cut(s) 425, 428, 437, 449, 632, 635, 638, 704
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 2 cut(s) 95, 1052
TspRI CASTG 3 cut(s) 360, 469, 597
Tth111I GACNNNGTC 1 cut(s) 1029
XapI RAATTY 3 cut(s) 236, 738, 990
XceI RCATGY 2 cut(s) 62, 902
XmiI GTMKAC 1 cut(s) 1033
XspI CTAG 2 cut(s) 345, 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.