FvH4_5g19120

Auxin canalisation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011081
Physical Location & Seq
Forward (+)
11035104 .. 11039111
4008 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19120.t2

Sequence Viewer

Length: 1170 bp
ATGGAAGGCAGTTATCATAGTTTAGCTAGTAGTACAGGTGGTTCATTGCATGCAGAGAAGTTGCAGGAAGAAGATGACATGAAAATTGGGCCATATATGGCTGGAATTCCTCAACCACAGACACCGCAGGAACCTATGGAGTTCTTGTCAAGGTCATGGAGTATCTCTGCTTCAGAAATCTCGAAGGCTCTTGCTAAAAGACAGAAGCAATCTTTCACTGCCAAGAGTCCTGACACAGTCCTAGAATCAATTCCTTTACCACCACTACAAGGCAAGGTCAGGAAATCTGTTACCACTAACAGTCGGAGAAAGGGGACAATTGGAAAATGGTTCAACAATGAGTTCAATTATAGCATAGTGAAGAAGAAAGACAAGGAACGGCTGGAAAGGGCGCGAGTGCATACTGCGGTCTCCATTGCAGGAGTTGCTGCAGCCTTAGCTGCTATATCGGCAACAGATAACACCAGTGACCCTCCCTCAAAAATGAGCATATCTTTGGCATTGGCTACAGAGTTGCTGGCATCGCACTGTATTGAATTGGCGGAGTCAGCAGGAGCTGATCGCAACCGTCTGGCATCTACTGTCAGATCAGCCCTTGACATTCAAAGTCCTGGTGATCTTATGACCCTTACAGCAGCTGCTGCAACAGCGTTGCGAGGAGAAGAAGCATTGAGAGCAAGATTACCGAAAGAGCCAAGAAAGGTTGCGGCCATTAGCCCCTATGATAGGGGAATGTCCGAAATTCATTCACCTTCGGTTGTTCATAGTCATATCCAGGAGAAGGATGGTCCTTGTAATGGAGATTTACTGCAACTTATGGGAAAAGGTATTCAACAATGGAAGACTGTCTCTGTCTACGTTAACAAAAAATCTCAGGTCATCATTAAACTCAAACGTAAACAGGTTGGGGGAGCCTTTGCCAAGAAGAGTAAAAGTGTTGTTTATGGAGTCTGTGATGAGAATTCTGCTTGGCCATATATGAAAGAAAGGGAAATTCCAGAAGAGGTTTATTTTGGCCTCAAAACGGCACAGGGTTTAATAGAATTCAAGTGCAGAAGTAAGGCTCATAAGCAGCAATGGGTTGATGGGATCAAAAAACTTCTTTGTCGAGTGAGCTCTCTTGATGAAGCTGAGCGCTCTATTGGACTTTTAAGCATCAGCAGTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

390

Amino Acids

42.5

Weight (kDa)

9.44

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 39 - 72 1.6e-11 Auxin canalisation
Auxin_canalis PF05703 93 - 243 1.3e-48 Auxin canalisation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17350 AT5G47440
fragaria_vesca FvH4_5g19120 FvH4_5g19120
malus_domestica MD06G1056800.v1.1
prunus_persica Prupe.5G067500_v2.0.a1 Prupe.5G067500_v2.0.a1 Prupe.5G067500_v2.0.a1
pyrus_communis pycom06g04740
rosa_chinensis RchiOBHm_Chr7g0203601
rosa_laevigata RLG00000003515
rosa_multiflora Rmu_sc0010675.1_g000003
rosa_roxburghii Rroxscaffold_3G00253650
rosa_rugosa Rorug07G0077200 Rorug07G0077300
rosa_samantha Rh7AG207000 Rh7BG206500 Rh7CG219600 Rh7DG214200
rosa_wichuraiana Rw7G018060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 855
AccII CGCG 1 cut(s) 394
AciI CCGC 4 cut(s) 125, 407, 542, 707
AclWI GGATC 1 cut(s) 1097
AcoI YGGCCR 2 cut(s) 708, 971
AcsI RAATTY 5 cut(s) 105, 741, 961, 993, 1043
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 2 cut(s) 34, 1165
AfeI AGCGCT 1 cut(s) 1136
AfiI CCNNNNNNNGG 5 cut(s) 269, 726, 781, 797, 1024
AgsI TTSAA 6 cut(s) 334, 346, 536, 605, 833, 1048
AjnI CCWGG 2 cut(s) 610, 774
AluBI AGCT 6 cut(s) 26, 440, 557, 638, 1116, 1130
AluI AGCT 6 cut(s) 26, 440, 557, 638, 1116, 1130
Alw21I GWGCWC 1 cut(s) 1118
Alw26I GTCTC 2 cut(s) 415, 853
AlwI GGATC 1 cut(s) 1097
AlwNI CAGNNNCTG 3 cut(s) 557, 638, 641
Aor51HI AGCGCT 1 cut(s) 1136
AoxI GGCC 4 cut(s) 89, 708, 971, 1015
ApeKI GCWGC 7 cut(s) 428, 431, 440, 635, 638, 641, 1072
ApoI RAATTY 5 cut(s) 105, 741, 961, 993, 1043
Asp700I GAANNNNTTC 1 cut(s) 249
AspLEI GCGC 2 cut(s) 394, 1137
AspS9I GGNCC 2 cut(s) 89, 788
AsuHPI GGTGA 2 cut(s) 626, 741
AvaII GGWCC 1 cut(s) 788
BalI TGGCCA 1 cut(s) 973
BanII GRGCYC 1 cut(s) 1118
BarI GAAGNNNNNNTAC 2 cut(s) 154, 186
BbsI GAAGAC 1 cut(s) 848
Bbv12I GWGCWC 1 cut(s) 1118
BbvI GCAGC 7 cut(s) 415, 427, 443, 625, 628, 647, 1084
BccI CCATC 2 cut(s) 779, 1079
BceAI ACGGC 2 cut(s) 395, 1041
BciT130I CCWGG 2 cut(s) 612, 776
BcoDI GTCTC 2 cut(s) 415, 853
BfaI CTAG 2 cut(s) 27, 242
BfmI CTRYAG 2 cut(s) 429, 507
BfoI RGCGCY 1 cut(s) 1138
BisI GCNGC 8 cut(s) 429, 432, 441, 636, 639, 642, 708, 1073
BlpI GCTNAGC 1 cut(s) 1131
BlsI GCNGC 8 cut(s) 430, 433, 442, 637, 640, 643, 709, 1074
Bme1390I CCNGG 2 cut(s) 612, 776
Bme18I GGWCC 1 cut(s) 788
BmgT120I GGNCC 2 cut(s) 89, 788
BmiI GGNNCC 2 cut(s) 132, 913
BmrFI CCNGG 2 cut(s) 612, 776
BmsI GCATC 3 cut(s) 530, 584, 1164
BpiI GAAGAC 1 cut(s) 848
Bpu10I CCTNAGC 1 cut(s) 436
Bpu1102I GCTNAGC 1 cut(s) 1131
BsaI GGTCTC 1 cut(s) 415
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 5 cut(s) 269, 726, 781, 797, 1024
Bse1I ACTGG 1 cut(s) 465
Bse3DI GCAATG 3 cut(s) 44, 414, 1082
BseBI CCWGG 2 cut(s) 612, 776
BseGI GGATG 1 cut(s) 790
BseLI CCNNNNNNNGG 5 cut(s) 269, 726, 781, 797, 1024
BseMI GCAATG 3 cut(s) 44, 414, 1082
BseMII CTCAG 2 cut(s) 887, 1122
BseNI ACTGG 1 cut(s) 465
BseRI GAGGAG 1 cut(s) 672
BseXI GCAGC 7 cut(s) 415, 427, 443, 625, 628, 647, 1084
BsgI GTGCAG 1 cut(s) 1072
Bsh1236I CGCG 1 cut(s) 394
BshFI GGCC 4 cut(s) 91, 710, 973, 1017
BsiHKAI GWGCWC 1 cut(s) 1118
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 5 cut(s) 269, 726, 781, 797, 1024
BsmAI GTCTC 2 cut(s) 415, 853
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 4 cut(s) 91, 710, 973, 1017
Bso31I GGTCTC 1 cut(s) 415
Bsp1286I GDGCHC 1 cut(s) 1118
Bsp143I GATC 4 cut(s) 559, 587, 616, 1089
Bsp1720I GCTNAGC 1 cut(s) 1131
BspACI CCGC 4 cut(s) 125, 407, 542, 707
BspANI GGCC 4 cut(s) 91, 710, 973, 1017
BspCNI CTCAG 2 cut(s) 886, 1123
BspFNI CGCG 1 cut(s) 394
BspLI GGNNCC 2 cut(s) 132, 913
BspMAI CTGCAG 1 cut(s) 433
BspPI GGATC 1 cut(s) 1097
BspTNI GGTCTC 1 cut(s) 415
BsrDI GCAATG 3 cut(s) 44, 414, 1082
BsrI ACTGG 1 cut(s) 465
BssMI GATC 4 cut(s) 559, 587, 616, 1089
Bst2UI CCWGG 2 cut(s) 612, 776
Bst4CI ACNGT 6 cut(s) 238, 302, 530, 569, 583, 847
Bst6I CTCTTC 2 cut(s) 920, 996
BstAPI GCANNNNNTGC 2 cut(s) 425, 641
BstC8I GCNNGC 2 cut(s) 51, 519
BstDEI CTNAG 3 cut(s) 436, 873, 1131
BstENI CCTNNNNNAGG 1 cut(s) 724
BstF5I GGATG 1 cut(s) 790
BstFNI CGCG 1 cut(s) 394
BstH2I RGCGCY 1 cut(s) 1138
BstHHI GCGC 2 cut(s) 394, 1137
BstKTI GATC 4 cut(s) 562, 590, 619, 1092
BstMAI GTCTC 2 cut(s) 415, 853
BstMBI GATC 4 cut(s) 559, 587, 616, 1089
BstMWI GCNNNNNNNGC 9 cut(s) 425, 437, 440, 449, 523, 548, 641, 647, 674
BstNI CCWGG 2 cut(s) 612, 776
BstNSI RCATGY 1 cut(s) 53
BstSCI CCNGG 2 cut(s) 610, 774
BstSFI CTRYAG 2 cut(s) 429, 507
BstUI CGCG 1 cut(s) 394
BstV1I GCAGC 7 cut(s) 415, 427, 443, 625, 628, 647, 1084
BstV2I GAAGAC 1 cut(s) 848
BsuRI GGCC 4 cut(s) 91, 710, 973, 1017
BtgZI GCGATG 1 cut(s) 507
BtsCI GGATG 1 cut(s) 790
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 3 cut(s) 216, 472, 526
Cac8I GCNNGC 2 cut(s) 51, 519
CaiI CAGNNNCTG 3 cut(s) 557, 638, 641
CfoI GCGC 2 cut(s) 394, 1137
Cfr13I GGNCC 2 cut(s) 89, 788
Csp6I GTAC 2 cut(s) 33, 1164
CviAII CATG 4 cut(s) 50, 79, 156, 1167
CviQI GTAC 2 cut(s) 33, 1164
DdeI CTNAG 3 cut(s) 436, 873, 1131
DpnI GATC 4 cut(s) 561, 589, 618, 1091
DpnII GATC 4 cut(s) 559, 587, 616, 1089
EaeI YGGCCR 2 cut(s) 708, 971
Eam1104I CTCTTC 2 cut(s) 920, 996
EarI CTCTTC 2 cut(s) 920, 996
EciI GGCGGA 1 cut(s) 557
Ecl136II GAGCTC 1 cut(s) 1116
Eco24I GRGCYC 1 cut(s) 1118
Eco31I GGTCTC 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 788
Eco47III AGCGCT 1 cut(s) 1136
Eco53kI GAGCTC 1 cut(s) 1116
Eco57I CTGAAG 1 cut(s) 156
EcoICRI GAGCTC 1 cut(s) 1116
EcoNI CCTNNNNNAGG 1 cut(s) 724
EcoRI GAATTC 3 cut(s) 105, 961, 1043
EcoRII CCWGG 2 cut(s) 610, 774
EcoT38I GRGCYC 1 cut(s) 1118
FaeI CATG 4 cut(s) 53, 82, 159, 1170
FaqI GGGAC 1 cut(s) 328
FatI CATG 4 cut(s) 49, 78, 155, 1166
FblI GTMKAC 1 cut(s) 855
Fnu4HI GCNGC 8 cut(s) 429, 432, 441, 636, 639, 642, 708, 1073
FokI GGATG 1 cut(s) 797
FriOI GRGCYC 1 cut(s) 1118
Fsp4HI GCNGC 8 cut(s) 429, 432, 441, 636, 639, 642, 708, 1073
FspBI CTAG 2 cut(s) 27, 242
GlaI GCGC 2 cut(s) 393, 1136
GluI GCNGC 8 cut(s) 429, 432, 441, 636, 639, 642, 708, 1073
HaeII RGCGCY 1 cut(s) 1138
HaeIII GGCC 4 cut(s) 91, 710, 973, 1017
HhaI GCGC 2 cut(s) 394, 1137
Hin1II CATG 4 cut(s) 53, 82, 159, 1170
Hin6I GCGC 2 cut(s) 392, 1135
HinP1I GCGC 2 cut(s) 392, 1135
HincII GTYRAC 1 cut(s) 862
HindII GTYRAC 1 cut(s) 862
HinfI GANTC 4 cut(s) 226, 245, 545, 948
HpaI GTTAAC 1 cut(s) 862
HphI GGTGA 2 cut(s) 626, 741
Hpy166II GTNNAC 3 cut(s) 856, 862, 899
Hpy188I TCNGA 4 cut(s) 175, 306, 587, 739
Hpy188III TCNNGA 5 cut(s) 181, 230, 280, 998, 1121
Hpy8I GTNNAC 3 cut(s) 856, 862, 899
HpyAV CCTTC 3 cut(s) 178, 762, 775
HpyCH4III ACNGT 6 cut(s) 238, 302, 530, 569, 583, 847
HpyCH4IV ACGT 2 cut(s) 858, 895
HpyCH4V TGCA 9 cut(s) 49, 53, 64, 400, 419, 431, 644, 811, 1053
HpyF10VI GCNNNNNNNGC 9 cut(s) 425, 437, 440, 449, 523, 548, 641, 647, 674
HpyF3I CTNAG 3 cut(s) 436, 873, 1131
HpySE526I ACGT 2 cut(s) 858, 895
Hsp92II CATG 4 cut(s) 53, 82, 159, 1170
HspAI GCGC 2 cut(s) 392, 1135
KspAI GTTAAC 1 cut(s) 862
Kzo9I GATC 4 cut(s) 559, 587, 616, 1089
LmnI GCTCC 2 cut(s) 554, 911
Lsp1109I GCAGC 7 cut(s) 415, 427, 443, 625, 628, 647, 1084
LweI GCATC 3 cut(s) 530, 584, 1164
MaeI CTAG 2 cut(s) 27, 242
MaeII ACGT 2 cut(s) 858, 895
MaeIII GTNAC 2 cut(s) 289, 467
MalI GATC 4 cut(s) 561, 589, 618, 1091
MboI GATC 4 cut(s) 559, 587, 616, 1089
MboII GAAGA 8 cut(s) 80, 83, 373, 376, 674, 853, 937, 1013
MfeI CAATTG 1 cut(s) 318
MhlI GDGCHC 1 cut(s) 1118
MlsI TGGCCA 1 cut(s) 973
MluNI TGGCCA 1 cut(s) 973
MlyI GAGTC 3 cut(s) 235, 554, 957
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 6 cut(s) 120, 483, 487, 650, 997, 1028
Mox20I TGGCCA 1 cut(s) 973
MroXI GAANNNNTTC 1 cut(s) 249
MscI TGGCCA 1 cut(s) 973
MseI TTAA 4 cut(s) 861, 885, 1037, 1151
Msp20I TGGCCA 1 cut(s) 973
MspA1I CMGCKG 1 cut(s) 638
MspR9I CCNGG 2 cut(s) 612, 776
MunI CAATTG 1 cut(s) 318
MvaI CCWGG 2 cut(s) 612, 776
MvnI CGCG 1 cut(s) 394
MwoI GCNNNNNNNGC 9 cut(s) 425, 437, 440, 449, 523, 548, 641, 647, 674
NdeII GATC 4 cut(s) 559, 587, 616, 1089
NlaIII CATG 4 cut(s) 53, 82, 159, 1170
NlaIV GGNNCC 2 cut(s) 132, 913
NmuCI GTSAC 1 cut(s) 467
NspI RCATGY 1 cut(s) 53
PaeI GCATGC 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 245
PflFI GACNNNGTC 1 cut(s) 236
PfoI TCCNGGA 1 cut(s) 774
PkrI GCNGC 8 cut(s) 430, 433, 442, 637, 640, 643, 709, 1074
PleI GAGTC 3 cut(s) 234, 553, 956
PpsI GAGTC 3 cut(s) 234, 553, 956
Psp124BI GAGCTC 1 cut(s) 1118
Psp6I CCWGG 2 cut(s) 610, 774
PspGI CCWGG 2 cut(s) 610, 774
PspN4I GGNNCC 2 cut(s) 132, 913
PspPI GGNCC 2 cut(s) 89, 788
PsrI GAACNNNNNNTAC 2 cut(s) 25, 57
PstI CTGCAG 1 cut(s) 433
PstNI CAGNNNCTG 3 cut(s) 557, 638, 641
PsyI GACNNNGTC 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 2 cut(s) 34, 1165
RsaNI GTAC 2 cut(s) 33, 1164
SacI GAGCTC 1 cut(s) 1118
SaqAI TTAA 4 cut(s) 861, 885, 1037, 1151
SatI GCNGC 8 cut(s) 429, 432, 441, 636, 639, 642, 708, 1073
Sau3AI GATC 4 cut(s) 559, 587, 616, 1089
Sau96I GGNCC 2 cut(s) 89, 788
SchI GAGTC 3 cut(s) 235, 554, 957
ScrFI CCNGG 2 cut(s) 612, 776
SduI GDGCHC 1 cut(s) 1118
SfaNI GCATC 3 cut(s) 530, 584, 1164
SfcI CTRYAG 2 cut(s) 429, 507
SinI GGWCC 1 cut(s) 788
SphI GCATGC 1 cut(s) 53
SsiI CCGC 4 cut(s) 125, 407, 542, 707
SspMI CTAG 2 cut(s) 27, 242
SstI GAGCTC 1 cut(s) 1118
StyD4I CCNGG 2 cut(s) 610, 774
TaaI ACNGT 6 cut(s) 238, 302, 530, 569, 583, 847
TaiI ACGT 2 cut(s) 861, 898
TaqI TCGA 2 cut(s) 182, 1108
TatI WGTACW 2 cut(s) 32, 1163
TauI GCSGC 1 cut(s) 710
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 4 cut(s) 861, 885, 1037, 1151
Tru9I TTAA 4 cut(s) 861, 885, 1037, 1151
TscAI CASTG 3 cut(s) 223, 472, 533
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 7 cut(s) 428, 431, 440, 635, 638, 641, 1072
Tsp45I GTSAC 1 cut(s) 467
TspDTI ATGAA 6 cut(s) 33, 95, 734, 752, 995, 1140
TspRI CASTG 3 cut(s) 223, 472, 533
Tth111I GACNNNGTC 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 788
XagI CCTNNNNNAGG 1 cut(s) 724
XapI RAATTY 5 cut(s) 105, 741, 961, 993, 1043
XceI RCATGY 1 cut(s) 53
XcmI CCANNNNNNNNNTGG 1 cut(s) 782
XmiI GTMKAC 1 cut(s) 855
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 2 cut(s) 27, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.